Wall clock time and date at job start Tue Mar 31 2020 11:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47136 * 270.00398 * 3 2 1 5 5 H 1.48506 * 109.46902 * 29.99847 * 3 2 1 6 6 H 1.48498 * 109.47224 * 149.99614 * 3 2 1 7 7 C 1.38805 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00245 * 163.76484 * 7 2 1 9 9 N 1.36937 * 120.00068 * 343.76383 * 7 2 1 10 10 C 1.47167 * 120.70993 * 154.14489 * 9 7 2 11 11 C 1.53889 * 108.03024 * 132.77826 * 10 9 7 12 12 H 1.08997 * 112.57931 * 182.21851 * 11 10 9 13 13 C 1.54548 * 107.83002 * 306.50232 * 11 10 9 14 14 C 1.54284 * 104.84664 * 89.07195 * 13 11 10 15 15 C 1.54546 * 104.85238 * 359.97438 * 14 13 11 16 16 H 1.08997 * 112.17804 * 146.40917 * 15 14 13 17 17 C 1.47155 * 120.70953 * 334.16940 * 9 7 2 18 18 N 1.48311 * 107.20647 * 58.36114 * 11 10 9 19 19 C 1.34768 * 128.07932 * 106.44948 * 18 11 10 20 20 O 1.21685 * 120.00283 * 359.97438 * 19 18 11 21 21 C 1.46723 * 120.00157 * 180.02562 * 19 18 11 22 22 O 1.35339 * 126.64669 * 0.02562 * 21 19 18 23 23 C 1.33656 * 107.68994 * 179.97438 * 22 21 19 24 24 N 1.30622 * 109.15543 * 359.97438 * 23 22 21 25 25 C 1.33697 * 108.99181 * 359.76904 * 24 23 22 26 26 C 1.50692 * 126.27251 * 180.25709 * 25 24 23 27 27 C 1.53000 * 117.50117 * 8.87829 * 26 25 24 28 28 C 1.52998 * 117.49826 * 300.21754 * 26 25 24 29 29 H 0.97006 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.75125 * 13.14569 * 10 9 7 31 31 H 1.09000 * 109.74958 * 252.40816 * 10 9 7 32 32 H 1.08996 * 110.36431 * 207.91104 * 13 11 10 33 33 H 1.08996 * 110.36373 * 330.11832 * 13 11 10 34 34 H 1.08992 * 110.36686 * 118.84869 * 14 13 11 35 35 H 1.09010 * 110.35731 * 241.04816 * 14 13 11 36 36 H 1.08999 * 109.75595 * 107.58940 * 17 9 7 37 37 H 1.09000 * 109.79361 * 346.87528 * 17 9 7 38 38 H 1.08005 * 125.42664 * 180.02562 * 23 22 21 39 39 H 1.09004 * 115.55295 * 154.55614 * 26 25 24 40 40 H 1.08997 * 117.49772 * 0.02562 * 27 26 25 41 41 H 1.09010 * 117.49534 * 145.02027 * 27 26 25 42 42 H 1.09004 * 117.50372 * 214.97982 * 28 26 25 43 43 H 1.09002 * 117.50357 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0579 -1.2209 -0.2610 9 7 1.3665 -2.3642 0.3326 10 6 1.8460 -3.6601 -0.1738 11 6 1.8971 -4.6441 1.0084 12 1 2.2815 -5.6229 0.7218 13 6 2.7373 -3.9928 2.1302 14 6 1.7216 -3.1903 2.9696 15 6 0.3600 -3.4290 2.2785 16 1 -0.4645 -3.4527 2.9910 17 6 0.1801 -2.3439 1.2031 18 7 0.5279 -4.7230 1.5729 19 6 -0.3588 -5.7322 1.4649 20 8 -0.0666 -6.7346 0.8400 21 6 -1.6768 -5.6218 2.0999 22 8 -2.1410 -4.5747 2.8209 23 6 -3.3814 -4.8737 3.2190 24 7 -3.7004 -6.0594 2.7734 25 6 -2.6738 -6.5515 2.0724 26 6 -2.6261 -7.8898 1.3813 27 6 -3.9268 -8.6917 1.3040 28 6 -2.8066 -9.1385 2.2467 29 1 -0.4850 0.8401 -0.0004 30 1 2.8427 -3.5434 -0.5991 31 1 1.1615 -4.0342 -0.9350 32 1 3.2129 -4.7596 2.7416 33 1 3.4888 -3.3283 1.7040 34 1 1.6979 -3.5624 3.9938 35 1 1.9736 -2.1299 2.9579 36 1 -0.7127 -2.5535 0.6140 37 1 0.0872 -1.3670 1.6777 38 1 -4.0188 -4.2362 3.8137 39 1 -1.9417 -7.9581 0.5357 40 1 -4.8171 -8.2512 1.7527 41 1 -4.0979 -9.2880 0.4076 42 1 -2.2413 -10.0286 1.9702 43 1 -2.9593 -8.9922 3.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017947747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:55 Heat of formation + Delta-G solvation = 60.417236 kcal Electronic energy + Delta-G solvation = -27770.880626 eV Core-core repulsion = 24013.040450 eV Total energy + Delta-G solvation = -3757.840176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38652 -40.10695 -37.98716 -37.25357 -34.45009 -34.10816 -31.74596 -30.92446 -30.52087 -30.01258 -26.40744 -24.62182 -23.72527 -23.67143 -22.74991 -22.33038 -21.19663 -20.58012 -19.97135 -18.77249 -17.64819 -16.91103 -16.72663 -16.00413 -15.69956 -15.31646 -15.17052 -14.63245 -14.53528 -14.30875 -13.71878 -13.45571 -13.17059 -12.91251 -12.84664 -12.14233 -12.04962 -11.94594 -11.85374 -11.63233 -11.51032 -11.20164 -10.90928 -10.87653 -10.58866 -10.56176 -10.51610 -10.42959 -10.36543 -10.06334 -9.86513 -9.76525 -9.73305 -8.82153 -8.61865 -8.29646 -6.78511 -5.88161 -3.30092 0.92709 2.41913 2.54134 3.24256 3.31419 3.34259 3.39224 3.40239 3.89869 4.02846 4.40374 4.48350 4.68324 4.94042 5.02964 5.05001 5.24338 5.30147 5.32356 5.36681 5.49206 5.53138 5.60493 5.63971 5.71303 5.78557 5.81892 6.01717 6.11958 6.14104 6.19093 6.25108 6.28853 6.32878 6.35376 6.50691 6.64998 6.76988 6.89645 7.12769 7.42013 7.55286 7.67882 7.90027 8.28572 8.30484 9.08361 9.71000 10.27863 11.20433 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.004026 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.182467 B = 6952.362976 C = 7483.693184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.137 3.863 11 C 0.117 3.883 12 H 0.094 0.906 13 C -0.112 4.112 14 C -0.112 4.112 15 C 0.093 3.907 16 H 0.094 0.906 17 C 0.175 3.825 18 N -0.593 5.593 19 C 0.619 3.381 20 O -0.532 6.532 21 C -0.085 4.085 22 O -0.180 6.180 23 C 0.192 3.808 24 N -0.493 5.493 25 C 0.097 3.903 26 C -0.085 4.085 27 C -0.164 4.164 28 C -0.160 4.160 29 H 0.255 0.745 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.022 0.978 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -11.052 8.055 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.310 5.310 10 C 0.010 3.990 11 C 0.013 3.987 12 H 0.112 0.888 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.011 4.011 16 H 0.111 0.889 17 C 0.049 3.951 18 N -0.324 5.324 19 C 0.407 3.593 20 O -0.412 6.412 21 C -0.141 4.141 22 O -0.065 6.065 23 C -0.034 4.034 24 N -0.222 5.222 25 C -0.027 4.027 26 C -0.104 4.104 27 C -0.201 4.201 28 C -0.198 4.198 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.040 0.960 37 H 0.113 0.887 38 H 0.269 0.731 39 H 0.156 0.844 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.192 -11.690 7.832 14.682 hybrid contribution 0.702 1.536 -0.049 1.689 sum -3.489 -10.154 7.783 13.261 Atomic orbital electron populations 1.70017 1.05255 1.25631 1.54019 1.25018 0.95293 0.98378 1.00815 0.86295 0.79104 0.83578 0.77777 1.21421 1.21568 1.20414 1.19168 0.92423 0.84300 1.42253 0.91294 1.44076 1.32017 1.01131 1.53809 1.21462 0.98569 0.86674 0.92302 1.23008 0.80424 0.99475 0.95773 0.88845 1.22324 0.97898 0.98588 0.96200 1.22315 0.93952 1.01965 0.96777 1.23595 0.98029 0.83494 0.95951 0.88865 1.21246 0.88861 0.95826 0.89179 1.49132 1.15348 1.16452 1.51498 1.15854 0.80570 0.82594 0.80301 1.90802 1.76540 1.30283 1.43614 1.22924 0.98236 0.88624 1.04304 1.84656 1.29171 1.39845 1.52864 1.28265 0.82986 0.93669 0.98447 1.70200 1.28948 1.09431 1.13592 1.20911 0.88178 0.96358 0.97235 1.20496 1.02464 0.85575 1.01819 1.22986 0.92851 1.02537 1.01699 1.22939 1.02385 0.96878 0.97559 0.93517 0.91542 0.96036 0.92745 0.89669 0.93026 0.89304 0.95955 0.88708 0.73053 0.84405 0.87889 0.88416 0.88190 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 11.12 55.49 0.62 -24.44 16 2 C 0.00 0.09 4.95 -17.44 -0.09 0.01 16 3 Si 0.90 20.63 29.58 -169.99 -5.03 15.60 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.25 -6.43 9.64 -15.06 -0.15 -6.58 16 8 H 0.07 1.72 7.87 -52.48 -0.41 1.30 16 9 N -0.59 -13.74 2.29 -171.12 -0.39 -14.13 16 10 C 0.14 2.81 6.02 -3.21 -0.02 2.79 16 11 C 0.12 2.08 4.11 -65.66 -0.27 1.81 16 12 H 0.09 1.57 7.93 -51.93 -0.41 1.16 16 13 C -0.11 -1.79 6.18 -25.25 -0.16 -1.94 16 14 C -0.11 -1.85 6.18 -25.25 -0.16 -2.01 16 15 C 0.09 1.70 3.82 -65.67 -0.25 1.45 16 16 H 0.09 1.59 5.56 -51.93 -0.29 1.30 16 17 C 0.18 3.96 4.60 -3.25 -0.01 3.94 16 18 N -0.59 -11.02 2.74 -154.54 -0.42 -11.45 16 19 C 0.62 11.72 7.89 -12.84 -0.10 11.62 16 20 O -0.53 -10.71 15.18 5.20 0.08 -10.63 16 21 C -0.09 -1.46 7.02 -36.84 -0.26 -1.72 16 22 O -0.18 -2.73 8.01 4.46 0.04 -2.69 16 23 C 0.19 2.30 13.21 52.25 0.69 2.99 16 24 N -0.49 -7.03 10.89 -10.88 -0.12 -7.15 16 25 C 0.10 1.53 6.67 -82.47 -0.55 0.98 16 26 C -0.08 -1.21 5.60 -91.78 -0.51 -1.73 16 27 C -0.16 -1.88 10.15 -26.69 -0.27 -2.15 16 28 C -0.16 -1.86 10.24 -26.69 -0.27 -2.13 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.41 7.84 -51.93 -0.41 1.00 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.60 7.84 -51.92 -0.41 1.19 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 2.33 6.28 -51.93 -0.33 2.01 16 38 H 0.25 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.14 2.14 6.65 -51.93 -0.35 1.79 16 40 H 0.10 1.22 7.92 -51.93 -0.41 0.81 16 41 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -30.62 346.64 -8.33 -38.94 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.94 Total: 3.40 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.38 Total: 7.32 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.32 Total: -57.16 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.11 Total: -13.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.62 -8.33 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017947747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.358 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds