Wall clock time and date at job start Tue Mar 31 2020 11:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47136 * 270.00398 * 3 2 1 5 5 H 1.48506 * 109.46902 * 29.99847 * 3 2 1 6 6 H 1.48498 * 109.47224 * 149.99614 * 3 2 1 7 7 C 1.38805 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00245 * 163.76484 * 7 2 1 9 9 N 1.36937 * 120.00068 * 343.76383 * 7 2 1 10 10 C 1.47167 * 120.70993 * 154.14489 * 9 7 2 11 11 C 1.53889 * 108.03024 * 132.77826 * 10 9 7 12 12 H 1.08997 * 112.57931 * 182.21851 * 11 10 9 13 13 C 1.54548 * 107.83002 * 306.50232 * 11 10 9 14 14 C 1.54284 * 104.84664 * 89.07195 * 13 11 10 15 15 C 1.54546 * 104.85238 * 359.97438 * 14 13 11 16 16 H 1.08997 * 112.17804 * 146.40917 * 15 14 13 17 17 C 1.47155 * 120.70953 * 334.16940 * 9 7 2 18 18 N 1.48311 * 107.20647 * 58.36114 * 11 10 9 19 19 C 1.34768 * 128.07932 * 106.44948 * 18 11 10 20 20 O 1.21685 * 120.00283 * 359.97438 * 19 18 11 21 21 C 1.46723 * 120.00157 * 180.02562 * 19 18 11 22 22 O 1.35339 * 126.64669 * 0.02562 * 21 19 18 23 23 C 1.33656 * 107.68994 * 179.97438 * 22 21 19 24 24 N 1.30622 * 109.15543 * 359.97438 * 23 22 21 25 25 C 1.33697 * 108.99181 * 359.76904 * 24 23 22 26 26 C 1.50692 * 126.27251 * 180.25709 * 25 24 23 27 27 C 1.53000 * 117.50117 * 8.87829 * 26 25 24 28 28 C 1.52998 * 117.49826 * 300.21754 * 26 25 24 29 29 H 0.97006 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.75125 * 13.14569 * 10 9 7 31 31 H 1.09000 * 109.74958 * 252.40816 * 10 9 7 32 32 H 1.08996 * 110.36431 * 207.91104 * 13 11 10 33 33 H 1.08996 * 110.36373 * 330.11832 * 13 11 10 34 34 H 1.08992 * 110.36686 * 118.84869 * 14 13 11 35 35 H 1.09010 * 110.35731 * 241.04816 * 14 13 11 36 36 H 1.08999 * 109.75595 * 107.58940 * 17 9 7 37 37 H 1.09000 * 109.79361 * 346.87528 * 17 9 7 38 38 H 1.08005 * 125.42664 * 180.02562 * 23 22 21 39 39 H 1.09004 * 115.55295 * 154.55614 * 26 25 24 40 40 H 1.08997 * 117.49772 * 0.02562 * 27 26 25 41 41 H 1.09010 * 117.49534 * 145.02027 * 27 26 25 42 42 H 1.09004 * 117.50372 * 214.97982 * 28 26 25 43 43 H 1.09002 * 117.50357 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0579 -1.2209 -0.2610 9 7 1.3665 -2.3642 0.3326 10 6 1.8460 -3.6601 -0.1738 11 6 1.8971 -4.6441 1.0084 12 1 2.2815 -5.6229 0.7218 13 6 2.7373 -3.9928 2.1302 14 6 1.7216 -3.1903 2.9696 15 6 0.3600 -3.4290 2.2785 16 1 -0.4645 -3.4527 2.9910 17 6 0.1801 -2.3439 1.2031 18 7 0.5279 -4.7230 1.5729 19 6 -0.3588 -5.7322 1.4649 20 8 -0.0666 -6.7346 0.8400 21 6 -1.6768 -5.6218 2.0999 22 8 -2.1410 -4.5747 2.8209 23 6 -3.3814 -4.8737 3.2190 24 7 -3.7004 -6.0594 2.7734 25 6 -2.6738 -6.5515 2.0724 26 6 -2.6261 -7.8898 1.3813 27 6 -3.9268 -8.6917 1.3040 28 6 -2.8066 -9.1385 2.2467 29 1 -0.4850 0.8401 -0.0004 30 1 2.8427 -3.5434 -0.5991 31 1 1.1615 -4.0342 -0.9350 32 1 3.2129 -4.7596 2.7416 33 1 3.4888 -3.3283 1.7040 34 1 1.6979 -3.5624 3.9938 35 1 1.9736 -2.1299 2.9579 36 1 -0.7127 -2.5535 0.6140 37 1 0.0872 -1.3670 1.6777 38 1 -4.0188 -4.2362 3.8137 39 1 -1.9417 -7.9581 0.5357 40 1 -4.8171 -8.2512 1.7527 41 1 -4.0979 -9.2880 0.4076 42 1 -2.2413 -10.0286 1.9702 43 1 -2.9593 -8.9922 3.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017947747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:54 Heat of formation + Delta-G solvation = 40.940910 kcal Electronic energy + Delta-G solvation = -27771.725183 eV Core-core repulsion = 24013.040450 eV Total energy + Delta-G solvation = -3758.684732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.51200 -41.59879 -39.41913 -38.34071 -36.00285 -35.46047 -33.34523 -32.47981 -32.18654 -31.23603 -28.17454 -25.99987 -25.30447 -24.80144 -24.27981 -23.28713 -22.57660 -21.93940 -21.21036 -20.23321 -19.29053 -18.03149 -17.95213 -17.62780 -17.14910 -16.70221 -16.45637 -16.23091 -15.75222 -15.63036 -15.26641 -14.98859 -14.76896 -14.46706 -14.27135 -13.71129 -13.58568 -13.28228 -13.03383 -12.93988 -12.89119 -12.67510 -12.41932 -12.30099 -12.17149 -12.12051 -12.00857 -11.73141 -11.63827 -11.54517 -11.46632 -11.18937 -11.05602 -10.59940 -10.11510 -9.74228 -8.70634 -7.87049 -5.32458 -0.26730 1.33837 1.36980 1.49356 1.51507 1.60423 1.88879 2.00310 2.51763 2.91594 3.04915 3.29083 3.36225 3.45782 3.50829 3.80227 3.88430 3.94137 4.08707 4.12182 4.15039 4.28184 4.33470 4.40610 4.48682 4.54967 4.68577 4.73244 4.79389 4.83086 4.92037 5.00985 5.05007 5.09489 5.13760 5.22250 5.23576 5.27536 5.32327 5.51590 5.56410 5.65544 6.31778 6.37193 6.50621 6.87497 7.10641 7.78330 8.32852 9.19697 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.004026 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.182467 B = 6952.362976 C = 7483.693184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.047 4.047 3 Si 0.967 3.033 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.255 4.255 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.136 3.864 11 C 0.120 3.880 12 H 0.106 0.894 13 C -0.103 4.103 14 C -0.106 4.106 15 C 0.105 3.895 16 H 0.108 0.892 17 C 0.189 3.811 18 N -0.599 5.599 19 C 0.616 3.384 20 O -0.553 6.553 21 C -0.128 4.128 22 O -0.192 6.192 23 C 0.220 3.780 24 N -0.512 5.512 25 C 0.107 3.893 26 C -0.119 4.119 27 C -0.146 4.146 28 C -0.144 4.144 29 H 0.250 0.750 30 H 0.079 0.921 31 H -0.007 1.007 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.072 0.928 36 H -0.021 1.021 37 H 0.071 0.929 38 H 0.307 0.693 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -11.900 9.960 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.219 1.219 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.385 4.385 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.009 3.991 11 C 0.016 3.984 12 H 0.124 0.876 13 C -0.141 4.141 14 C -0.144 4.144 15 C 0.002 3.998 16 H 0.126 0.874 17 C 0.062 3.938 18 N -0.330 5.330 19 C 0.405 3.595 20 O -0.435 6.435 21 C -0.183 4.183 22 O -0.079 6.079 23 C -0.004 4.004 24 N -0.241 5.241 25 C -0.017 4.017 26 C -0.138 4.138 27 C -0.183 4.183 28 C -0.181 4.181 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.011 0.989 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.091 0.909 36 H -0.003 1.003 37 H 0.089 0.911 38 H 0.322 0.678 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.962 -12.569 9.742 16.389 hybrid contribution 0.500 1.751 -0.689 1.947 sum -3.462 -10.818 9.053 14.525 Atomic orbital electron populations 1.70189 1.06744 1.25850 1.55811 1.25739 0.95923 1.01350 1.01242 0.85284 0.78295 0.79608 0.77269 1.21885 1.22089 1.18922 1.19525 0.92829 0.85097 1.41066 0.90636 1.44279 1.31926 1.01679 1.54250 1.21553 0.98240 0.86178 0.93116 1.22951 0.80856 0.99256 0.95287 0.87612 1.22290 0.97243 0.98993 0.95549 1.22278 0.92560 1.01277 0.98314 1.23354 0.99960 0.81893 0.94637 0.87444 1.20945 0.87054 0.96233 0.89528 1.49180 1.15634 1.16396 1.51755 1.16126 0.81176 0.82314 0.79887 1.90769 1.77249 1.31014 1.44484 1.22594 0.98311 0.90150 1.07254 1.84618 1.30518 1.39589 1.53144 1.29592 0.81823 0.93134 0.95863 1.70263 1.28577 1.10615 1.14628 1.21219 0.87966 0.96436 0.96040 1.20521 1.04459 0.86244 1.02563 1.23061 0.91706 1.01227 1.02346 1.23025 1.01978 0.95750 0.97393 0.94130 0.90266 0.98898 0.89748 0.90118 0.89964 0.90894 1.00324 0.91068 0.67800 0.86330 0.88030 0.86509 0.86485 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.78 11.12 21.65 0.24 -53.54 16 2 C -0.05 -2.52 4.95 84.86 0.42 -2.10 16 3 Si 0.97 42.82 29.58 68.60 2.03 44.85 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.26 -13.17 9.64 84.03 0.81 -12.36 16 8 H 0.08 3.73 7.87 -2.91 -0.02 3.71 16 9 N -0.60 -28.65 2.29 -695.30 -1.59 -30.24 16 10 C 0.14 5.67 6.02 86.55 0.52 6.19 16 11 C 0.12 4.20 4.11 45.47 0.19 4.39 16 12 H 0.11 3.46 7.93 -2.39 -0.02 3.44 16 13 C -0.10 -3.06 6.18 31.56 0.20 -2.87 16 14 C -0.11 -3.33 6.18 31.56 0.20 -3.13 16 15 C 0.11 3.84 3.82 45.44 0.17 4.01 16 16 H 0.11 3.61 5.56 -2.39 -0.01 3.59 16 17 C 0.19 8.85 4.60 86.54 0.40 9.24 16 18 N -0.60 -22.30 2.74 -761.07 -2.09 -24.39 16 19 C 0.62 23.67 7.89 86.46 0.68 24.35 16 20 O -0.55 -22.78 15.18 -4.30 -0.07 -22.84 16 21 C -0.13 -4.41 7.02 24.05 0.17 -4.24 16 22 O -0.19 -5.66 8.01 -6.96 -0.06 -5.72 16 23 C 0.22 4.77 13.21 130.42 1.72 6.49 16 24 N -0.51 -13.79 10.89 -303.13 -3.30 -17.09 16 25 C 0.11 3.34 6.67 41.83 0.28 3.62 16 26 C -0.12 -3.36 5.60 -11.54 -0.06 -3.42 16 27 C -0.15 -3.13 10.15 30.62 0.31 -2.82 16 28 C -0.14 -3.11 10.24 30.62 0.31 -2.79 16 29 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 30 H 0.08 3.05 7.96 -2.39 -0.02 3.03 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.51 7.84 -2.39 -0.02 2.49 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.55 7.84 -2.38 -0.02 2.53 16 36 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 37 H 0.07 3.65 6.28 -2.39 -0.01 3.64 16 38 H 0.31 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.12 3.79 6.65 -2.38 -0.02 3.78 16 40 H 0.10 2.22 7.92 -2.39 -0.02 2.20 16 41 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -69.22 346.64 2.51 -66.70 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.03 Total: 17.70 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 6.31 Total: 24.55 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -6.74 Total: -125.25 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.12 Total: -28.56 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -69.22 2.51 -66.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017947747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.645 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds