Wall clock time and date at job start Tue Mar 31 2020 11:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99719 * 2 1 4 4 H 1.48496 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46666 * 299.99679 * 3 2 1 6 6 H 1.48491 * 109.47210 * 59.99458 * 3 2 1 7 7 C 1.38810 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00152 * 195.10514 * 7 2 1 9 9 N 1.36939 * 119.99928 * 15.10119 * 7 2 1 10 10 C 1.48371 * 120.34060 * 25.34873 * 9 7 2 11 11 C 1.53884 * 107.40818 * 133.13488 * 10 9 7 12 12 H 1.09000 * 112.09813 * 181.86445 * 11 10 9 13 13 C 1.54548 * 107.83156 * 305.82803 * 11 10 9 14 14 C 1.54277 * 104.94889 * 89.62227 * 13 11 10 15 15 C 1.54800 * 104.72675 * 0.08943 * 14 13 11 16 16 H 1.08999 * 112.68812 * 146.63529 * 15 14 13 17 17 C 1.47157 * 120.70833 * 205.17400 * 9 7 2 18 18 N 1.48311 * 104.40244 * 24.61933 * 15 14 13 19 19 C 1.34778 * 128.07766 * 139.12067 * 18 15 14 20 20 O 1.21587 * 119.99868 * 180.02562 * 19 18 15 21 21 C 1.47504 * 119.99955 * 359.97438 * 19 18 15 22 22 C 1.36824 * 126.94625 * 179.71042 * 21 19 18 23 23 C 1.41260 * 103.84884 * 179.91151 * 22 21 19 24 24 C 1.50706 * 126.70117 * 180.12762 * 23 22 21 25 25 C 1.52991 * 117.50145 * 343.87007 * 24 23 22 26 26 C 1.52992 * 60.00096 * 252.51326 * 25 24 23 27 27 N 1.30128 * 106.59037 * 0.35686 * 23 22 21 28 28 O 1.20887 * 111.98031 * 359.77060 * 27 23 22 29 29 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.61799 * 13.37647 * 10 9 7 31 31 H 1.08999 * 109.49508 * 252.25170 * 10 9 7 32 32 H 1.09002 * 110.36427 * 208.52512 * 13 11 10 33 33 H 1.09009 * 110.35811 * 330.72585 * 13 11 10 34 34 H 1.08997 * 110.36115 * 118.90046 * 14 13 11 35 35 H 1.08992 * 110.36628 * 241.22258 * 14 13 11 36 36 H 1.09010 * 109.75236 * 107.63362 * 17 9 7 37 37 H 1.09001 * 109.79729 * 346.92323 * 17 9 7 38 38 H 1.08009 * 128.07502 * 0.02562 * 22 21 19 39 39 H 1.09001 * 115.54623 * 129.58753 * 24 23 22 40 40 H 1.08999 * 117.49994 * 0.02562 * 25 24 23 41 41 H 1.09008 * 117.49863 * 145.02169 * 25 24 23 42 42 H 1.09001 * 117.50031 * 252.50395 * 26 25 24 43 43 H 1.09006 * 117.51785 * 107.48791 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0624 -1.2180 0.2443 9 7 1.3612 -2.3677 -0.3079 10 6 0.1447 -2.3460 -1.1570 11 6 0.3065 -3.4456 -2.2214 12 1 -0.5365 -3.4754 -2.9116 13 6 1.6485 -3.2058 -2.9494 14 6 2.6909 -3.9989 -2.1342 15 6 1.8809 -4.6491 -0.9864 16 1 2.2720 -5.6240 -0.6955 17 6 1.8582 -3.6595 0.1919 18 7 0.4974 -4.7351 -1.5139 19 6 -0.3813 -5.7484 -1.3813 20 8 -1.4874 -5.6630 -1.8788 21 6 -0.0006 -6.9616 -0.6336 22 6 -0.7763 -8.0658 -0.4079 23 6 0.0604 -8.9186 0.3459 24 6 -0.2872 -10.2879 0.8706 25 6 -1.7665 -10.6764 0.9058 26 6 -1.0261 -10.3653 2.2080 27 7 1.1882 -8.2886 0.5028 28 8 1.1785 -7.2037 -0.0302 29 1 -0.4850 0.8400 -0.0004 30 1 0.0330 -1.3768 -1.6429 31 1 -0.7314 -2.5541 -0.5428 32 1 1.5987 -3.5832 -3.9708 33 1 1.8953 -2.1440 -2.9497 34 1 3.1536 -4.7663 -2.7547 35 1 3.4490 -3.3270 -1.7319 36 1 1.1953 -4.0320 0.9730 37 1 2.8654 -3.5384 0.5906 38 1 -1.7910 -8.2446 -0.7321 39 1 0.4348 -11.0737 0.6483 40 1 -2.4884 -9.9418 0.5491 41 1 -2.0182 -11.7181 0.7064 42 1 -0.7907 -11.2023 2.8654 43 1 -1.2606 -9.4259 2.7086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018009412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:13 Heat of formation + Delta-G solvation = 83.475749 kcal Electronic energy + Delta-G solvation = -27335.411619 eV Core-core repulsion = 23578.571336 eV Total energy + Delta-G solvation = -3756.840283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.13244 -41.65592 -39.45943 -38.56770 -35.97723 -34.44263 -33.61233 -33.04058 -32.08919 -31.99562 -28.18391 -25.95283 -25.70957 -25.27645 -24.32257 -23.40363 -22.92407 -21.85809 -21.42183 -20.11355 -19.20267 -18.87773 -18.10346 -17.55007 -17.06349 -16.89289 -16.35752 -16.14465 -15.90899 -15.43820 -15.27604 -15.02218 -14.83666 -14.44618 -14.33475 -13.72396 -13.56235 -13.28990 -13.17154 -12.96077 -12.83429 -12.71762 -12.42220 -12.24922 -12.23529 -12.12840 -12.09484 -11.74685 -11.61582 -11.43648 -11.40990 -11.16331 -10.99812 -10.73843 -10.60235 -9.96640 -8.70774 -7.84733 -5.30149 -0.36872 0.88877 1.34499 1.49505 1.52217 1.61705 1.80563 1.96622 2.52714 2.61951 2.94639 3.22894 3.32296 3.46163 3.67791 3.77477 3.80078 3.88968 3.95425 4.01845 4.07797 4.14067 4.18705 4.35455 4.37683 4.51766 4.69870 4.72254 4.79688 4.81199 4.83341 4.98321 4.98530 5.06599 5.08205 5.11473 5.20579 5.21237 5.35825 5.54905 5.57806 5.68154 6.32834 6.36500 6.67191 6.97715 7.10119 7.79212 8.33547 9.22228 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.003413 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.431342 B = 8200.861636 C = 8356.554548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.301 1.301 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.187 3.813 11 C 0.110 3.890 12 H 0.092 0.908 13 C -0.105 4.105 14 C -0.102 4.102 15 C 0.111 3.889 16 H 0.119 0.881 17 C 0.137 3.863 18 N -0.593 5.593 19 C 0.613 3.387 20 O -0.557 6.557 21 C -0.081 4.081 22 C -0.146 4.146 23 C 0.050 3.950 24 C -0.106 4.106 25 C -0.148 4.148 26 C -0.162 4.162 27 N -0.359 5.359 28 O 0.109 5.891 29 H 0.248 0.752 30 H 0.073 0.927 31 H -0.019 1.019 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.083 0.917 36 H -0.002 1.002 37 H 0.082 0.918 38 H 0.198 0.802 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -20.008 -2.359 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.229 1.229 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.061 3.939 11 C 0.007 3.993 12 H 0.110 0.890 13 C -0.143 4.143 14 C -0.141 4.141 15 C 0.008 3.992 16 H 0.137 0.863 17 C 0.010 3.990 18 N -0.324 5.324 19 C 0.400 3.600 20 O -0.437 6.437 21 C -0.147 4.147 22 C -0.168 4.168 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.185 4.185 26 C -0.200 4.200 27 N -0.062 5.062 28 O 0.039 5.961 29 H 0.057 0.943 30 H 0.092 0.908 31 H -0.001 1.001 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.016 0.984 37 H 0.101 0.899 38 H 0.215 0.785 39 H 0.157 0.843 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.529 -20.171 -1.985 20.426 hybrid contribution -0.881 1.509 0.116 1.751 sum 1.649 -18.662 -1.868 18.828 Atomic orbital electron populations 1.70192 1.06783 1.25646 1.56362 1.25760 0.95940 1.01425 1.01639 0.85193 0.78834 0.79956 0.76363 1.18538 1.21877 1.22852 1.19600 0.92560 0.84918 1.40758 0.90307 1.44586 1.29721 1.01929 1.56288 1.21207 0.86897 0.95973 0.89866 1.23141 0.99876 0.81766 0.94553 0.89002 1.22277 0.92360 1.01438 0.98237 1.22343 0.97229 0.99174 0.95309 1.23296 0.80217 0.99930 0.95789 0.86313 1.21576 0.98486 0.85898 0.93014 1.49199 1.15281 1.15956 1.51915 1.16322 0.83664 0.80388 0.79634 1.90812 1.21431 1.80583 1.50852 1.24002 0.88422 0.98716 1.03514 1.23042 1.02855 0.91025 0.99894 1.23128 0.89357 0.98882 0.99403 1.20323 0.98554 0.89877 1.03703 1.23201 0.91171 1.04419 0.99728 1.23127 1.02329 1.04063 0.90485 1.73677 1.23300 0.94223 1.15013 1.85047 1.32540 1.27647 1.50821 0.94273 0.90846 1.00091 0.89986 0.90908 0.89267 0.89863 0.98363 0.89938 0.78479 0.84315 0.88260 0.85164 0.85730 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.00 10.99 21.65 0.24 -54.77 16 2 C -0.05 -2.85 5.00 84.86 0.42 -2.42 16 3 Si 0.97 43.43 29.58 68.60 2.03 45.46 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.25 -12.75 9.66 84.03 0.81 -11.94 16 8 H 0.08 3.85 7.86 -2.91 -0.02 3.83 16 9 N -0.60 -28.57 2.31 -692.07 -1.60 -30.17 16 10 C 0.19 9.01 4.63 86.32 0.40 9.41 16 11 C 0.11 4.23 4.08 45.47 0.19 4.41 16 12 H 0.09 3.50 7.93 -2.39 -0.02 3.48 16 13 C -0.10 -3.33 6.17 31.55 0.19 -3.14 16 14 C -0.10 -2.92 6.20 31.64 0.20 -2.72 16 15 C 0.11 3.59 3.85 45.56 0.18 3.76 16 16 H 0.12 3.35 5.57 -2.39 -0.01 3.34 16 17 C 0.14 5.41 6.03 86.55 0.52 5.93 16 18 N -0.59 -21.45 2.76 -759.71 -2.09 -23.55 16 19 C 0.61 22.43 7.92 86.69 0.69 23.12 16 20 O -0.56 -23.10 17.23 -3.99 -0.07 -23.17 16 21 C -0.08 -2.50 7.13 24.38 0.17 -2.33 16 22 C -0.15 -3.76 10.26 22.68 0.23 -3.52 16 23 C 0.05 1.20 6.94 43.56 0.30 1.51 16 24 C -0.11 -1.73 6.33 -11.54 -0.07 -1.80 16 25 C -0.15 -1.72 10.04 30.59 0.31 -1.41 16 26 C -0.16 -2.22 10.23 30.59 0.31 -1.91 16 27 N -0.36 -10.16 12.04 -48.86 -0.59 -10.75 16 28 O 0.11 3.26 8.50 65.82 0.56 3.82 16 29 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.07 3.91 6.27 -2.39 -0.01 3.89 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 2.59 7.83 -2.38 -0.02 2.57 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.47 7.84 -2.39 -0.02 2.45 16 36 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 37 H 0.08 2.99 7.96 -2.39 -0.02 2.98 16 38 H 0.20 4.24 7.61 -2.91 -0.02 4.21 16 39 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.10 1.22 7.33 -2.39 -0.02 1.20 16 41 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -66.78 348.84 4.36 -62.43 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.03 Total: 13.75 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 4.85 Total: 16.94 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -4.04 Total: -119.23 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.49 Total: -19.35 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.78 4.36 -62.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018009412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.905 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds