Wall clock time and date at job start Tue Mar 31 2020 11:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38300 * 119.92662 * 2 1 4 4 C 1.38098 * 120.07463 * 180.02562 * 3 2 1 5 5 C 1.38927 * 119.92505 * 359.97438 * 4 3 2 6 6 N 1.39723 * 120.07640 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99891 * 35.09375 * 6 5 4 8 8 O 1.21373 * 120.00225 * 355.38869 * 7 6 5 9 9 C 1.49353 * 120.00008 * 175.38033 * 7 6 5 10 10 O 1.21359 * 119.99948 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00426 * 180.02562 * 9 7 6 12 12 C 1.47032 * 125.64520 * 359.69229 * 11 9 7 13 13 C 1.54331 * 107.26410 * 178.85236 * 12 11 9 14 14 C 1.55158 * 103.02076 * 338.13935 * 13 12 11 15 15 H 1.09005 * 111.03617 * 277.21664 * 14 13 12 16 16 N 1.46503 * 111.00170 * 153.38678 * 14 13 12 17 17 C 1.36937 * 120.00008 * 161.35360 * 16 14 13 18 18 H 1.07998 * 120.00038 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99995 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99804 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46870 * 120.00184 * 21 19 17 24 24 H 1.48497 * 109.47068 * 240.00283 * 21 19 17 25 25 C 1.47418 * 125.65299 * 180.02562 * 11 9 7 26 26 C 1.38927 * 119.85093 * 0.28225 * 5 4 3 27 27 C 1.38104 * 119.92167 * 359.46302 * 26 5 4 28 28 H 1.08995 * 109.47222 * 89.99834 * 1 2 3 29 29 H 1.08991 * 109.47597 * 210.00376 * 1 2 3 30 30 H 1.09004 * 109.46786 * 330.00590 * 1 2 3 31 31 H 1.07991 * 119.95948 * 359.97183 * 3 2 1 32 32 H 1.07999 * 120.03672 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00465 * 215.10450 * 6 5 4 34 34 H 1.08998 * 109.88094 * 298.39490 * 12 11 9 35 35 H 1.09000 * 109.87794 * 59.55689 * 12 11 9 36 36 H 1.09004 * 110.84805 * 219.67364 * 13 12 11 37 37 H 1.08997 * 110.66868 * 96.52525 * 13 12 11 38 38 H 0.97001 * 119.99567 * 341.34274 * 16 14 13 39 39 H 0.96995 * 119.99512 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.36691 * 322.92537 * 25 11 9 41 41 H 1.08994 * 110.37399 * 85.25023 * 25 11 9 42 42 H 1.08002 * 120.04365 * 179.72695 * 26 5 4 43 43 H 1.07999 * 119.96501 * 180.27883 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5779 1.2022 -0.0005 5 6 4.2741 -0.0001 -0.0005 6 7 5.6713 -0.0002 -0.0005 7 6 6.3452 0.9548 0.6705 8 8 5.7414 1.8621 1.2047 9 6 7.8351 0.8966 0.7570 10 8 8.4389 -0.0104 0.2226 11 7 8.5090 1.8512 1.4284 12 6 7.9066 3.0041 2.1138 13 6 9.0564 3.8032 2.7629 14 6 10.1915 2.7516 2.8778 15 1 10.0666 2.1369 3.7693 16 7 11.5072 3.3960 2.8679 17 6 12.6038 2.7208 3.3332 18 1 12.4988 1.7133 3.7079 19 6 13.8506 3.3312 3.3234 20 7 13.9787 4.5588 2.8662 21 14 15.3464 2.4102 3.9588 22 1 14.9380 1.0571 4.4142 23 1 16.3496 2.2852 2.8711 24 1 15.9406 3.1565 5.0968 25 6 9.9727 1.9163 1.5915 26 6 3.5778 -1.2023 -0.0059 27 6 2.1968 -1.1986 -0.0001 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8898 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6551 2.1328 -0.0005 32 1 4.1161 2.1385 -0.0001 33 1 6.1563 -0.6874 -0.4836 34 1 7.3787 3.6291 1.3936 35 1 7.2168 2.6586 2.8838 36 1 8.7673 4.1678 3.7486 37 1 9.3603 4.6302 2.1212 38 1 11.6014 4.3010 2.5316 39 1 14.8499 4.9851 2.8590 40 1 10.3856 0.9150 1.7148 41 1 10.4283 2.4125 0.7347 42 1 4.1159 -2.1387 -0.0104 43 1 1.6549 -2.1328 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019762542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:36 Heat of formation + Delta-G solvation = -19.604061 kcal Electronic energy + Delta-G solvation = -25455.872203 eV Core-core repulsion = 21694.562043 eV Total energy + Delta-G solvation = -3761.310159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18581 -39.72893 -38.47118 -37.46171 -35.48139 -34.14142 -31.86897 -31.62173 -31.22844 -29.70743 -28.06213 -27.04599 -25.01355 -23.54871 -23.19861 -22.37402 -21.28299 -20.30198 -19.81674 -18.25218 -17.59380 -17.11541 -16.63481 -16.41702 -15.69842 -15.52116 -15.32238 -14.69795 -14.42681 -14.13417 -14.03984 -13.91007 -13.65860 -13.49659 -13.20477 -13.05144 -12.68189 -12.54519 -12.43495 -12.29717 -12.10735 -11.64136 -11.44383 -11.30526 -11.12209 -10.88639 -10.73538 -10.49393 -10.32085 -10.04001 -9.81142 -9.58859 -9.19874 -9.06318 -8.56944 -8.32147 -7.13130 -5.87901 -3.19029 0.80688 1.12854 1.49347 2.19358 3.11254 3.38551 3.40762 3.45719 3.47192 3.51065 4.21131 4.50823 4.53661 4.59292 4.73947 4.94445 4.96317 5.10110 5.17993 5.21767 5.27802 5.30311 5.43032 5.54063 5.58273 5.65552 5.73189 5.77827 5.96360 5.99301 6.00762 6.10022 6.16349 6.18620 6.30018 6.32606 6.35137 6.48688 6.71402 6.80249 6.88091 7.39972 7.56524 7.62957 7.94437 8.29472 9.41798 9.93935 10.29031 11.34031 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.002218 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.463346 B =12620.583972 C =13093.518603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.102 4.102 4 C -0.115 4.115 5 C 0.137 3.863 6 N -0.649 5.649 7 C 0.511 3.489 8 O -0.495 6.495 9 C 0.514 3.486 10 O -0.528 6.528 11 N -0.577 5.577 12 C 0.110 3.890 13 C -0.143 4.143 14 C 0.172 3.828 15 H 0.067 0.933 16 N -0.710 5.710 17 C -0.250 4.250 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.079 3.921 26 C -0.137 4.137 27 C -0.103 4.103 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.422 0.578 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.388 0.612 39 H 0.257 0.743 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.981 -8.014 -6.360 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.121 4.121 4 C -0.135 4.135 5 C 0.043 3.957 6 N -0.296 5.296 7 C 0.294 3.706 8 O -0.369 6.369 9 C 0.296 3.704 10 O -0.406 6.406 11 N -0.311 5.311 12 C -0.013 4.013 13 C -0.182 4.182 14 C 0.059 3.941 15 H 0.085 0.915 16 N -0.350 5.350 17 C -0.381 4.381 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.046 4.046 26 C -0.157 4.157 27 C -0.121 4.121 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.158 0.842 33 H 0.260 0.740 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.223 0.777 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.146 0.854 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.881 -7.964 -6.165 27.771 hybrid contribution 1.207 -0.538 -0.110 1.326 sum -24.674 -8.502 -6.276 26.842 Atomic orbital electron populations 1.20766 0.91117 1.02783 1.02246 1.19960 0.96222 0.93155 1.00958 1.20957 0.93503 0.97729 0.99888 1.21319 0.94245 0.97825 1.00128 1.17757 0.81801 0.94416 1.01679 1.43150 1.04874 1.30933 1.50631 1.20449 0.89064 0.82309 0.78807 1.90745 1.69655 1.32609 1.43859 1.19414 0.87012 0.82979 0.80981 1.90772 1.69415 1.34163 1.46253 1.48419 1.09626 1.23712 1.49300 1.22197 0.95971 0.86570 0.96555 1.22989 0.95105 0.98720 1.01395 1.21329 0.86254 0.92423 0.94064 0.91518 1.42324 1.01575 1.16248 1.74867 1.19307 0.86373 0.97773 1.34610 0.90808 1.24788 0.97811 0.96476 1.01422 1.69670 1.23553 1.12772 1.51618 0.86089 0.82972 0.78846 0.78090 1.20399 1.21725 1.21739 1.23694 0.76128 1.02817 1.01918 1.20938 0.94573 0.96492 1.03692 1.20817 0.93174 0.97739 1.00400 0.91249 0.91606 0.91538 0.85627 0.84175 0.73961 0.90838 0.90609 0.89900 0.90340 0.77747 0.93342 0.90507 0.90614 0.85426 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.00 0.36 -0.26 16 2 C -0.10 -0.83 5.88 -104.58 -0.62 -1.44 16 3 C -0.10 -0.93 9.69 -39.61 -0.38 -1.32 16 4 C -0.12 -1.27 8.70 -39.38 -0.34 -1.61 16 5 C 0.14 1.48 6.30 -83.75 -0.53 0.95 16 6 N -0.65 -7.32 5.32 -10.30 -0.05 -7.37 16 7 C 0.51 6.98 7.70 -11.63 -0.09 6.89 16 8 O -0.50 -7.20 11.55 5.48 0.06 -7.13 16 9 C 0.51 8.12 7.91 -11.63 -0.09 8.03 16 10 O -0.53 -9.36 16.74 5.49 0.09 -9.26 16 11 N -0.58 -9.28 3.33 -171.05 -0.57 -9.85 16 12 C 0.11 1.55 5.49 -3.05 -0.02 1.53 16 13 C -0.14 -2.17 6.57 -24.89 -0.16 -2.33 16 14 C 0.17 3.24 3.69 -65.77 -0.24 3.00 16 15 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 16 N -0.71 -16.88 5.28 -51.34 -0.27 -17.15 16 17 C -0.25 -6.68 9.98 -15.06 -0.15 -6.83 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 21 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.08 1.44 6.60 -2.52 -0.02 1.43 16 26 C -0.14 -1.21 9.97 -39.38 -0.39 -1.61 16 27 C -0.10 -0.81 9.69 -39.61 -0.38 -1.20 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.14 1.68 6.22 -52.49 -0.33 1.35 16 33 H 0.42 4.10 8.30 -40.82 -0.34 3.77 16 34 H 0.07 0.98 7.71 -51.93 -0.40 0.58 16 35 H 0.08 1.03 7.57 -51.93 -0.39 0.64 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.20 7.99 -51.93 -0.42 0.78 16 38 H 0.39 9.73 7.71 -40.82 -0.31 9.42 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -31.06 362.39 -8.68 -39.74 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.95 Total: 10.21 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.15 Total: 4.92 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.17 Total: -60.83 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.16 Total: -16.40 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.06 -8.68 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019762542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.136 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds