Wall clock time and date at job start Tue Mar 31 2020 11:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38300 * 119.92662 * 2 1 4 4 C 1.38098 * 120.07463 * 180.02562 * 3 2 1 5 5 C 1.38927 * 119.92505 * 359.97438 * 4 3 2 6 6 N 1.39723 * 120.07640 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99891 * 35.09375 * 6 5 4 8 8 O 1.21373 * 120.00225 * 355.38869 * 7 6 5 9 9 C 1.49353 * 120.00008 * 175.38033 * 7 6 5 10 10 O 1.21359 * 119.99948 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00426 * 180.02562 * 9 7 6 12 12 C 1.47032 * 125.64520 * 359.69229 * 11 9 7 13 13 C 1.54331 * 107.26410 * 178.85236 * 12 11 9 14 14 C 1.55158 * 103.02076 * 338.13935 * 13 12 11 15 15 H 1.09005 * 111.03617 * 277.21664 * 14 13 12 16 16 N 1.46503 * 111.00170 * 153.38678 * 14 13 12 17 17 C 1.36937 * 120.00008 * 161.35360 * 16 14 13 18 18 H 1.07998 * 120.00038 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99995 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99804 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46870 * 120.00184 * 21 19 17 24 24 H 1.48497 * 109.47068 * 240.00283 * 21 19 17 25 25 C 1.47418 * 125.65299 * 180.02562 * 11 9 7 26 26 C 1.38927 * 119.85093 * 0.28225 * 5 4 3 27 27 C 1.38104 * 119.92167 * 359.46302 * 26 5 4 28 28 H 1.08995 * 109.47222 * 89.99834 * 1 2 3 29 29 H 1.08991 * 109.47597 * 210.00376 * 1 2 3 30 30 H 1.09004 * 109.46786 * 330.00590 * 1 2 3 31 31 H 1.07991 * 119.95948 * 359.97183 * 3 2 1 32 32 H 1.07999 * 120.03672 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00465 * 215.10450 * 6 5 4 34 34 H 1.08998 * 109.88094 * 298.39490 * 12 11 9 35 35 H 1.09000 * 109.87794 * 59.55689 * 12 11 9 36 36 H 1.09004 * 110.84805 * 219.67364 * 13 12 11 37 37 H 1.08997 * 110.66868 * 96.52525 * 13 12 11 38 38 H 0.97001 * 119.99567 * 341.34274 * 16 14 13 39 39 H 0.96995 * 119.99512 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.36691 * 322.92537 * 25 11 9 41 41 H 1.08994 * 110.37399 * 85.25023 * 25 11 9 42 42 H 1.08002 * 120.04365 * 179.72695 * 26 5 4 43 43 H 1.07999 * 119.96501 * 180.27883 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5779 1.2022 -0.0005 5 6 4.2741 -0.0001 -0.0005 6 7 5.6713 -0.0002 -0.0005 7 6 6.3452 0.9548 0.6705 8 8 5.7414 1.8621 1.2047 9 6 7.8351 0.8966 0.7570 10 8 8.4389 -0.0104 0.2226 11 7 8.5090 1.8512 1.4284 12 6 7.9066 3.0041 2.1138 13 6 9.0564 3.8032 2.7629 14 6 10.1915 2.7516 2.8778 15 1 10.0666 2.1369 3.7693 16 7 11.5072 3.3960 2.8679 17 6 12.6038 2.7208 3.3332 18 1 12.4988 1.7133 3.7079 19 6 13.8506 3.3312 3.3234 20 7 13.9787 4.5588 2.8662 21 14 15.3464 2.4102 3.9588 22 1 14.9380 1.0571 4.4142 23 1 16.3496 2.2852 2.8711 24 1 15.9406 3.1565 5.0968 25 6 9.9727 1.9163 1.5915 26 6 3.5778 -1.2023 -0.0059 27 6 2.1968 -1.1986 -0.0001 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8898 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6551 2.1328 -0.0005 32 1 4.1161 2.1385 -0.0001 33 1 6.1563 -0.6874 -0.4836 34 1 7.3787 3.6291 1.3936 35 1 7.2168 2.6586 2.8838 36 1 8.7673 4.1678 3.7486 37 1 9.3603 4.6302 2.1212 38 1 11.6014 4.3010 2.5316 39 1 14.8499 4.9851 2.8590 40 1 10.3856 0.9150 1.7148 41 1 10.4283 2.4125 0.7347 42 1 4.1159 -2.1387 -0.0104 43 1 1.6549 -2.1328 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019762542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:35 Heat of formation + Delta-G solvation = -39.462587 kcal Electronic energy + Delta-G solvation = -25456.733333 eV Core-core repulsion = 21694.562043 eV Total energy + Delta-G solvation = -3762.171290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24933 -40.76486 -39.45949 -38.83128 -36.48285 -35.82914 -33.38690 -32.54945 -31.91056 -31.24894 -29.51292 -27.92410 -26.39544 -25.06512 -24.01614 -23.53838 -22.14160 -21.69730 -20.97685 -19.54694 -19.03452 -18.41632 -17.84867 -17.66862 -16.81866 -16.45993 -16.31667 -16.19630 -15.69173 -15.35059 -15.01187 -14.94167 -14.75068 -14.55508 -14.46392 -14.34344 -13.98220 -13.81770 -13.27191 -13.23445 -12.97672 -12.93836 -12.91785 -12.58711 -12.42120 -12.27959 -12.07153 -12.04131 -11.78425 -11.63353 -11.30311 -11.05709 -10.71151 -9.92017 -9.89450 -9.11753 -9.06991 -7.98445 -5.28799 -0.10393 0.44421 0.51918 1.07174 1.48010 1.48837 1.58411 1.95704 2.29168 2.55008 2.79655 3.10711 3.33781 3.57396 3.85373 3.92023 3.98230 4.01761 4.10806 4.23247 4.32182 4.39415 4.46770 4.47584 4.49666 4.67257 4.82622 4.85590 4.90496 4.93334 4.97273 5.07026 5.12857 5.14726 5.27491 5.31848 5.35872 5.43101 5.51513 5.69049 5.88673 6.04909 6.17997 6.23318 6.49487 6.74697 7.30875 8.00675 8.25508 9.24324 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.002218 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.463346 B =12620.583972 C =13093.518603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.132 4.132 5 C 0.111 3.889 6 N -0.635 5.635 7 C 0.517 3.483 8 O -0.506 6.506 9 C 0.514 3.486 10 O -0.551 6.551 11 N -0.580 5.580 12 C 0.118 3.882 13 C -0.131 4.131 14 C 0.166 3.834 15 H 0.067 0.933 16 N -0.721 5.721 17 C -0.247 4.247 18 H 0.077 0.923 19 C -0.069 4.069 20 N -0.964 5.964 21 Si 0.971 3.029 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.292 1.292 25 C 0.091 3.909 26 C -0.135 4.135 27 C -0.105 4.105 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.429 0.571 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.379 0.621 39 H 0.252 0.748 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.146 0.854 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.550 -9.381 -6.170 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.152 4.152 5 C 0.018 3.982 6 N -0.282 5.282 7 C 0.299 3.701 8 O -0.380 6.380 9 C 0.296 3.704 10 O -0.430 6.430 11 N -0.313 5.313 12 C -0.004 4.004 13 C -0.169 4.169 14 C 0.056 3.944 15 H 0.085 0.915 16 N -0.360 5.360 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.262 4.262 20 N -0.614 5.614 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.219 1.219 25 C -0.034 4.034 26 C -0.155 4.155 27 C -0.123 4.123 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.268 0.732 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.212 0.788 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.163 0.837 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -28.522 -9.375 -5.981 30.613 hybrid contribution 1.820 -0.189 -0.220 1.843 sum -26.702 -9.564 -6.201 29.033 Atomic orbital electron populations 1.20829 0.89089 1.03727 1.03197 1.20340 0.97767 0.92783 0.99277 1.21176 0.92902 0.99046 0.99864 1.21319 0.95188 0.97363 1.01372 1.17956 0.81205 0.95290 1.03730 1.43027 1.05371 1.30168 1.49663 1.19928 0.87782 0.82960 0.79455 1.90742 1.69343 1.33182 1.44780 1.19836 0.88105 0.82273 0.80147 1.90753 1.70218 1.34989 1.47059 1.48409 1.08648 1.24524 1.49738 1.22249 0.95467 0.85837 0.96891 1.22919 0.93667 0.97676 1.02637 1.21465 0.85416 0.93563 0.94006 0.91538 1.42429 1.02773 1.15987 1.74854 1.19645 0.87329 0.97819 1.33052 0.90501 1.25539 1.00498 0.97416 1.02722 1.69804 1.23724 1.14238 1.53647 0.85118 0.79612 0.78165 0.77115 1.19147 1.22207 1.21887 1.23253 0.77766 1.01501 1.00922 1.21197 0.95205 0.96426 1.02712 1.21197 0.92903 0.98896 0.99306 0.90172 0.90342 0.90995 0.84270 0.85776 0.73226 0.89633 0.89451 0.88036 0.90387 0.78779 0.93871 0.92029 0.92097 0.83654 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.23 0.71 -0.17 16 2 C -0.10 -1.39 5.88 -19.84 -0.12 -1.50 16 3 C -0.11 -1.87 9.69 22.25 0.22 -1.65 16 4 C -0.13 -2.83 8.70 22.40 0.19 -2.63 16 5 C 0.11 2.28 6.30 38.21 0.24 2.52 16 6 N -0.64 -13.88 5.32 -304.85 -1.62 -15.50 16 7 C 0.52 13.83 7.70 87.24 0.67 14.50 16 8 O -0.51 -14.32 11.55 -3.32 -0.04 -14.36 16 9 C 0.51 16.09 7.91 87.24 0.69 16.78 16 10 O -0.55 -19.57 16.74 -3.28 -0.05 -19.63 16 11 N -0.58 -18.42 3.33 -813.44 -2.71 -21.13 16 12 C 0.12 3.16 5.49 86.73 0.48 3.63 16 13 C -0.13 -3.80 6.57 31.79 0.21 -3.59 16 14 C 0.17 6.25 3.69 46.39 0.17 6.42 16 15 H 0.07 2.52 8.13 -2.38 -0.02 2.50 16 16 N -0.72 -34.62 5.28 -316.33 -1.67 -36.29 16 17 C -0.25 -13.27 9.98 84.04 0.84 -12.43 16 18 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.96 -57.45 13.06 21.65 0.28 -57.16 16 21 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 C 0.09 3.36 6.60 86.86 0.57 3.93 16 26 C -0.14 -2.12 9.97 22.40 0.22 -1.90 16 27 C -0.10 -1.36 9.69 22.25 0.22 -1.15 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.07 0.51 8.08 -2.38 -0.02 0.49 16 31 H 0.14 1.82 8.06 -2.92 -0.02 1.80 16 32 H 0.12 2.99 6.22 -2.91 -0.02 2.97 16 33 H 0.43 8.04 8.30 -92.71 -0.77 7.27 16 34 H 0.09 2.15 7.71 -2.39 -0.02 2.13 16 35 H 0.09 2.20 7.57 -2.39 -0.02 2.18 16 36 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.08 2.31 7.99 -2.39 -0.02 2.29 16 38 H 0.38 19.37 7.71 -92.71 -0.71 18.65 16 39 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -66.84 362.39 1.57 -65.27 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.44 Total: 31.96 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 5.78 Total: 19.37 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.71 Total: -130.08 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.09 Total: -33.98 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.84 1.57 -65.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019762542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.808 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds