Wall clock time and date at job start Tue Mar 31 2020 11:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48505 * 109.47050 * 239.99958 * 3 2 1 5 5 H 1.48495 * 109.47506 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47217 * 120.00323 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00121 * 194.19825 * 7 2 1 9 9 N 1.36936 * 119.99426 * 14.20220 * 7 2 1 10 10 C 1.46924 * 120.63383 * 31.03751 * 9 7 2 11 11 C 1.53191 * 108.77761 * 126.37056 * 10 9 7 12 12 C 1.53034 * 109.31286 * 54.63196 * 11 10 9 13 13 C 1.53041 * 109.54160 * 298.64013 * 12 11 10 14 14 C 1.46932 * 120.62914 * 211.01607 * 9 7 2 15 15 H 1.09000 * 109.58864 * 113.70182 * 14 9 7 16 16 C 1.53001 * 109.58638 * 353.41679 * 14 9 7 17 17 N 1.46498 * 109.46836 * 60.18601 * 16 14 9 18 18 C 1.34780 * 119.99996 * 180.02562 * 17 16 14 19 19 O 1.21730 * 119.99711 * 359.72115 * 18 17 16 20 20 C 1.46492 * 120.00189 * 180.02562 * 18 17 16 21 21 C 1.37786 * 125.85699 * 179.69075 * 20 18 17 22 22 C 1.39940 * 107.68525 * 179.89696 * 21 20 18 23 23 O 1.35113 * 145.13920 * 180.02562 * 22 21 20 24 24 C 1.34382 * 109.62286 * 180.34617 * 23 22 21 25 25 C 1.34463 * 109.44684 * 359.97438 * 24 23 22 26 26 C 1.39137 * 107.39952 * 0.36162 * 22 21 20 27 27 N 1.37106 * 108.11693 * 359.77202 * 26 22 21 28 28 H 0.97000 * 125.74763 * 179.97438 * 27 26 22 29 29 H 0.97002 * 119.99404 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58911 * 246.15778 * 10 9 7 31 31 H 1.09005 * 109.59009 * 6.43903 * 10 9 7 32 32 H 1.09002 * 109.50435 * 174.59022 * 11 10 9 33 33 H 1.09005 * 109.49472 * 294.68671 * 11 10 9 34 34 H 1.09005 * 109.46047 * 58.66128 * 12 11 10 35 35 H 1.08998 * 109.46357 * 178.62957 * 12 11 10 36 36 H 1.08998 * 109.49472 * 301.40589 * 13 12 11 37 37 H 1.09008 * 109.49638 * 181.31720 * 13 12 11 38 38 H 1.09001 * 109.47280 * 300.19285 * 16 14 9 39 39 H 1.08995 * 109.47254 * 180.18898 * 16 14 9 40 40 H 0.97002 * 120.00461 * 0.02562 * 17 16 14 41 41 H 1.07997 * 126.15905 * 0.03268 * 21 20 18 42 42 H 1.08003 * 125.27655 * 179.97438 * 24 23 22 43 43 H 1.08000 * 126.41395 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0654 -1.2163 0.2299 9 7 1.3569 -2.3700 -0.2899 10 6 0.2145 -2.3789 -1.2137 11 6 0.4763 -3.4147 -2.3117 12 6 0.7745 -4.7705 -1.6677 13 6 2.0296 -4.6597 -0.7990 14 6 1.7854 -3.6381 0.3161 15 1 1.0074 -4.0043 0.9859 16 6 3.0789 -3.4192 1.1034 17 7 2.8457 -2.4326 2.1610 18 6 3.8509 -2.0791 2.9863 19 8 4.9511 -2.5834 2.8562 20 6 3.6176 -1.0930 4.0442 21 6 4.5519 -0.6500 4.9549 22 6 3.9254 0.2860 5.7855 23 8 4.0891 1.1237 6.8329 24 6 2.9303 1.7524 7.0933 25 6 1.9916 1.3392 6.2238 26 6 2.6025 0.3932 5.3679 27 7 2.4216 -0.4521 4.3037 28 1 1.5931 -0.5791 3.8153 29 1 -0.4849 0.8401 -0.0004 30 1 -0.6926 -2.6436 -0.6705 31 1 0.0979 -1.3914 -1.6603 32 1 -0.4041 -3.5002 -2.9487 33 1 1.3308 -3.1010 -2.9114 34 1 -0.0703 -5.0721 -1.0484 35 1 0.9372 -5.5149 -2.4472 36 1 2.8694 -4.3344 -1.4130 37 1 2.2547 -5.6314 -0.3593 38 1 3.8559 -3.0547 0.4315 39 1 3.3968 -4.3616 1.5492 40 1 1.9679 -2.0338 2.2673 41 1 5.5827 -0.9663 5.0153 42 1 2.7769 2.4772 7.8791 43 1 0.9635 1.6680 6.1860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024463828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:45 Heat of formation + Delta-G solvation = 44.934652 kcal Electronic energy + Delta-G solvation = -27201.686158 eV Core-core repulsion = 23443.174607 eV Total energy + Delta-G solvation = -3758.511551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.75233 -39.85739 -38.50308 -37.56940 -34.33220 -33.17271 -32.23997 -31.07896 -30.25556 -30.00798 -28.25460 -26.10331 -24.96263 -22.92782 -22.21081 -21.44301 -20.79644 -20.49423 -19.68416 -19.14973 -18.16307 -17.02136 -16.37582 -16.12120 -15.75540 -15.61059 -15.07797 -14.51292 -14.19274 -14.07239 -13.87592 -13.51469 -13.34251 -13.23254 -13.06068 -12.86453 -12.69895 -12.48280 -12.12872 -11.81644 -11.59925 -11.29231 -11.02719 -10.85144 -10.64295 -10.37955 -10.23131 -10.07899 -9.94801 -9.82154 -9.57526 -9.42447 -8.71482 -8.43734 -8.40554 -7.67756 -6.77548 -5.96025 -3.42807 1.21647 2.41024 2.66748 2.83374 3.11854 3.27979 3.33039 3.38702 3.67614 3.78861 4.33710 4.71855 4.93979 5.12775 5.21212 5.24913 5.40127 5.41377 5.56721 5.61029 5.62412 5.68810 5.88576 5.93329 5.99632 6.06992 6.20428 6.23135 6.30055 6.33777 6.44913 6.52752 6.63248 6.66462 6.76082 6.79341 6.87939 7.00935 7.28498 7.29539 7.51674 7.56015 7.67874 8.05945 8.29003 8.62099 9.04820 9.66321 10.24564 11.09849 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.004535 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.019831 B = 6172.048162 C = 7226.562620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.689 5.689 18 C 0.580 3.420 19 O -0.544 6.544 20 C 0.026 3.974 21 C -0.095 4.095 22 C -0.041 4.041 23 O -0.172 6.172 24 C -0.001 4.001 25 C -0.197 4.197 26 C 0.006 3.994 27 N -0.523 5.523 28 H 0.426 0.574 29 H 0.255 0.745 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.411 0.589 41 H 0.158 0.842 42 H 0.209 0.791 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -2.235 7.912 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.339 5.339 18 C 0.366 3.634 19 O -0.423 6.423 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.093 4.093 23 O -0.070 6.070 24 C -0.068 4.068 25 C -0.218 4.218 26 C -0.108 4.108 27 N -0.126 5.126 28 H 0.266 0.734 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.248 0.752 41 H 0.175 0.825 42 H 0.226 0.774 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.333 -2.470 7.846 8.333 hybrid contribution -0.761 1.315 -0.394 1.570 sum 0.572 -1.155 7.452 7.563 Atomic orbital electron populations 1.70001 1.05080 1.25700 1.53420 1.25053 0.95178 0.98044 1.00733 0.86585 0.79211 0.83722 0.78753 1.20805 1.21597 1.20561 1.19182 0.92103 0.84079 1.43012 0.91251 1.44078 1.36057 1.01953 1.49199 1.20758 0.88420 0.97553 0.88476 1.22191 1.00027 0.96551 0.99595 1.21360 0.97548 0.97382 0.98216 1.21934 0.98289 0.98223 0.98243 1.20747 0.93127 0.88593 0.92251 0.95013 1.21365 0.98599 0.90368 0.88597 1.45893 1.13707 1.43027 1.31233 1.16823 0.85008 0.80979 0.80579 1.90812 1.23673 1.55288 1.72553 1.20453 0.85106 1.01992 1.01272 1.19795 0.99740 0.98285 0.94473 1.19292 0.95052 1.00860 0.94068 1.83983 1.34037 1.46742 1.42201 1.23936 0.82244 0.99406 1.01245 1.20571 1.01405 1.01666 0.98203 1.19005 0.96444 1.00322 0.94994 1.41313 1.11738 1.33526 1.26033 0.73431 0.93495 0.96377 0.89761 0.93506 0.92794 0.92882 0.93638 0.91973 0.92917 0.91149 0.92148 0.75201 0.82478 0.77446 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.26 11.24 55.49 0.62 -22.64 16 2 C 0.01 0.24 4.96 -17.43 -0.09 0.15 16 3 Si 0.89 20.82 29.58 -169.99 -5.03 15.79 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.08 6.97 -15.06 -0.10 -6.18 16 8 H 0.07 1.73 5.86 -52.49 -0.31 1.42 16 9 N -0.59 -12.81 2.97 -164.78 -0.49 -13.30 16 10 C 0.17 3.75 5.27 -3.71 -0.02 3.73 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 13 C -0.13 -2.03 5.37 -26.61 -0.14 -2.18 16 14 C 0.16 2.92 3.01 -67.60 -0.20 2.72 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 16 C 0.13 2.42 4.43 -4.04 -0.02 2.40 16 17 N -0.69 -12.71 3.83 -61.68 -0.24 -12.94 16 18 C 0.58 11.10 7.78 -12.93 -0.10 11.00 16 19 O -0.54 -11.57 16.87 5.16 0.09 -11.48 16 20 C 0.03 0.46 7.03 -81.86 -0.58 -0.12 16 21 C -0.10 -1.63 10.58 -39.11 -0.41 -2.04 16 22 C -0.04 -0.68 8.20 -38.61 -0.32 -1.00 16 23 O -0.17 -2.52 10.68 3.22 0.03 -2.48 16 24 C 0.00 -0.01 12.02 29.40 0.35 0.35 16 25 C -0.20 -2.54 10.89 -39.70 -0.43 -2.97 16 26 C 0.01 0.10 8.11 -83.95 -0.68 -0.58 16 27 N -0.52 -8.64 6.08 -7.04 -0.04 -8.68 16 28 H 0.43 6.62 8.16 -40.82 -0.33 6.29 16 29 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 2.08 6.19 -51.93 -0.32 1.76 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 38 H 0.07 1.39 7.42 -51.93 -0.39 1.00 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 7.72 6.48 -40.82 -0.26 7.45 16 41 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.21 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -28.92 349.01 -8.67 -37.59 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.82 Total: 12.19 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -3.06 Total: 0.69 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.15 Total: -57.56 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.12 Total: -13.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.92 -8.67 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024463828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.524 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds