Wall clock time and date at job start Tue Mar 31 2020 11:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48505 * 109.47050 * 239.99958 * 3 2 1 5 5 H 1.48495 * 109.47506 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47217 * 120.00323 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00121 * 194.19825 * 7 2 1 9 9 N 1.36936 * 119.99426 * 14.20220 * 7 2 1 10 10 C 1.46924 * 120.63383 * 31.03751 * 9 7 2 11 11 C 1.53191 * 108.77761 * 126.37056 * 10 9 7 12 12 C 1.53034 * 109.31286 * 54.63196 * 11 10 9 13 13 C 1.53041 * 109.54160 * 298.64013 * 12 11 10 14 14 C 1.46932 * 120.62914 * 211.01607 * 9 7 2 15 15 H 1.09000 * 109.58864 * 113.70182 * 14 9 7 16 16 C 1.53001 * 109.58638 * 353.41679 * 14 9 7 17 17 N 1.46498 * 109.46836 * 60.18601 * 16 14 9 18 18 C 1.34780 * 119.99996 * 180.02562 * 17 16 14 19 19 O 1.21730 * 119.99711 * 359.72115 * 18 17 16 20 20 C 1.46492 * 120.00189 * 180.02562 * 18 17 16 21 21 C 1.37786 * 125.85699 * 179.69075 * 20 18 17 22 22 C 1.39940 * 107.68525 * 179.89696 * 21 20 18 23 23 O 1.35113 * 145.13920 * 180.02562 * 22 21 20 24 24 C 1.34382 * 109.62286 * 180.34617 * 23 22 21 25 25 C 1.34463 * 109.44684 * 359.97438 * 24 23 22 26 26 C 1.39137 * 107.39952 * 0.36162 * 22 21 20 27 27 N 1.37106 * 108.11693 * 359.77202 * 26 22 21 28 28 H 0.97000 * 125.74763 * 179.97438 * 27 26 22 29 29 H 0.97002 * 119.99404 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58911 * 246.15778 * 10 9 7 31 31 H 1.09005 * 109.59009 * 6.43903 * 10 9 7 32 32 H 1.09002 * 109.50435 * 174.59022 * 11 10 9 33 33 H 1.09005 * 109.49472 * 294.68671 * 11 10 9 34 34 H 1.09005 * 109.46047 * 58.66128 * 12 11 10 35 35 H 1.08998 * 109.46357 * 178.62957 * 12 11 10 36 36 H 1.08998 * 109.49472 * 301.40589 * 13 12 11 37 37 H 1.09008 * 109.49638 * 181.31720 * 13 12 11 38 38 H 1.09001 * 109.47280 * 300.19285 * 16 14 9 39 39 H 1.08995 * 109.47254 * 180.18898 * 16 14 9 40 40 H 0.97002 * 120.00461 * 0.02562 * 17 16 14 41 41 H 1.07997 * 126.15905 * 0.03268 * 21 20 18 42 42 H 1.08003 * 125.27655 * 179.97438 * 24 23 22 43 43 H 1.08000 * 126.41395 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0654 -1.2163 0.2299 9 7 1.3569 -2.3700 -0.2899 10 6 0.2145 -2.3789 -1.2137 11 6 0.4763 -3.4147 -2.3117 12 6 0.7745 -4.7705 -1.6677 13 6 2.0296 -4.6597 -0.7990 14 6 1.7854 -3.6381 0.3161 15 1 1.0074 -4.0043 0.9859 16 6 3.0789 -3.4192 1.1034 17 7 2.8457 -2.4326 2.1610 18 6 3.8509 -2.0791 2.9863 19 8 4.9511 -2.5834 2.8562 20 6 3.6176 -1.0930 4.0442 21 6 4.5519 -0.6500 4.9549 22 6 3.9254 0.2860 5.7855 23 8 4.0891 1.1237 6.8329 24 6 2.9303 1.7524 7.0933 25 6 1.9916 1.3392 6.2238 26 6 2.6025 0.3932 5.3679 27 7 2.4216 -0.4521 4.3037 28 1 1.5931 -0.5791 3.8153 29 1 -0.4849 0.8401 -0.0004 30 1 -0.6926 -2.6436 -0.6705 31 1 0.0979 -1.3914 -1.6603 32 1 -0.4041 -3.5002 -2.9487 33 1 1.3308 -3.1010 -2.9114 34 1 -0.0703 -5.0721 -1.0484 35 1 0.9372 -5.5149 -2.4472 36 1 2.8694 -4.3344 -1.4130 37 1 2.2547 -5.6314 -0.3593 38 1 3.8559 -3.0547 0.4315 39 1 3.3968 -4.3616 1.5492 40 1 1.9679 -2.0338 2.2673 41 1 5.5827 -0.9663 5.0153 42 1 2.7769 2.4772 7.8791 43 1 0.9635 1.6680 6.1860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024463828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:44 Heat of formation + Delta-G solvation = 27.396630 kcal Electronic energy + Delta-G solvation = -27202.446663 eV Core-core repulsion = 23443.174607 eV Total energy + Delta-G solvation = -3759.272056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.90065 -41.23112 -39.90603 -39.07757 -35.83342 -34.93584 -33.33762 -32.55861 -31.74178 -31.51741 -29.51155 -27.66746 -26.56823 -24.28223 -23.76443 -22.63684 -22.26832 -21.69628 -21.12052 -20.64593 -19.44459 -18.44647 -17.87590 -17.45075 -17.21091 -17.04861 -16.41048 -16.19865 -15.79124 -15.51627 -15.28747 -14.87800 -14.69886 -14.59362 -14.46745 -14.30762 -14.06584 -13.69553 -13.63998 -13.42930 -12.89588 -12.84910 -12.78233 -12.60414 -12.36384 -12.09555 -11.81381 -11.53709 -11.38562 -11.11120 -11.07604 -10.98719 -10.56561 -10.00605 -9.65544 -8.87587 -8.59199 -7.87951 -5.33891 -0.01859 1.21706 1.35741 1.40353 1.44885 1.50289 1.68446 1.88065 2.27276 2.39419 2.44660 3.26601 3.55742 3.61468 3.81378 3.96487 3.98012 4.22010 4.26203 4.30845 4.42374 4.48210 4.53989 4.64487 4.69093 4.75333 4.78338 4.86904 4.99893 5.02368 5.13872 5.22860 5.27803 5.33235 5.43570 5.46097 5.47988 5.60050 5.62526 5.72113 5.83256 6.12379 6.29241 6.40225 6.56234 7.11271 7.16061 7.85097 8.38263 9.15312 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.004535 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.019831 B = 6172.048162 C = 7226.562620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.025 4.025 3 Si 0.928 3.072 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.236 4.236 8 H 0.060 0.940 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.036 0.964 16 C 0.137 3.863 17 N -0.688 5.688 18 C 0.582 3.418 19 O -0.572 6.572 20 C -0.004 4.004 21 C -0.094 4.094 22 C -0.071 4.071 23 O -0.181 6.181 24 C 0.032 3.968 25 C -0.222 4.222 26 C 0.002 3.998 27 N -0.524 5.524 28 H 0.427 0.573 29 H 0.249 0.751 30 H 0.003 0.997 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.409 0.591 41 H 0.164 0.836 42 H 0.265 0.735 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -2.689 8.960 9.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.222 4.222 3 Si 0.759 3.241 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.366 4.366 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.336 5.336 18 C 0.369 3.631 19 O -0.453 6.453 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.122 4.122 23 O -0.079 6.079 24 C -0.035 4.035 25 C -0.243 4.243 26 C -0.113 4.113 27 N -0.127 5.127 28 H 0.267 0.733 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.245 0.755 41 H 0.182 0.818 42 H 0.280 0.720 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.032 -2.951 8.879 9.413 hybrid contribution -0.664 1.513 -0.605 1.759 sum 0.368 -1.438 8.274 8.406 Atomic orbital electron populations 1.70082 1.05604 1.25351 1.55326 1.25346 0.95489 0.99366 1.01961 0.85967 0.78049 0.82354 0.77739 1.21670 1.21937 1.21454 1.19149 0.91607 0.84963 1.40918 0.92273 1.44247 1.35857 1.02610 1.49803 1.20582 0.87906 0.97002 0.89252 1.22057 1.00427 0.96712 0.98339 1.21345 0.97424 0.96393 0.98858 1.21895 0.98273 0.98716 0.97276 1.20912 0.93014 0.87576 0.93131 0.94640 1.21387 0.97930 0.91026 0.88283 1.45885 1.13448 1.43078 1.31220 1.16968 0.84570 0.80849 0.80674 1.90779 1.24543 1.56493 1.73490 1.20246 0.86098 1.03301 1.02071 1.19972 0.99976 0.98046 0.94225 1.19350 0.95394 1.02076 0.95375 1.84004 1.35711 1.46657 1.41534 1.25086 0.80246 0.97590 1.00559 1.21024 1.03185 1.01773 0.98291 1.19651 0.96992 1.00088 0.94523 1.41272 1.11396 1.33686 1.26349 0.73318 0.94161 0.97877 0.93265 0.91798 0.93695 0.92343 0.90788 0.92730 0.89783 0.93085 0.90051 0.75471 0.81834 0.71964 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.60 11.24 21.65 0.24 -48.36 16 2 C -0.02 -1.25 4.96 84.86 0.42 -0.83 16 3 Si 0.93 43.77 29.58 68.60 2.03 45.80 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.24 -11.45 6.97 84.03 0.59 -10.86 16 8 H 0.06 3.01 5.86 -2.92 -0.02 2.99 16 9 N -0.60 -26.18 2.97 -675.24 -2.01 -28.18 16 10 C 0.18 7.73 5.27 86.36 0.46 8.18 16 11 C -0.14 -4.67 6.08 30.67 0.19 -4.48 16 12 C -0.10 -2.91 5.88 30.62 0.18 -2.73 16 13 C -0.12 -3.59 5.37 30.67 0.16 -3.43 16 14 C 0.16 5.67 3.01 44.97 0.14 5.80 16 15 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 16 C 0.14 4.89 4.43 86.38 0.38 5.27 16 17 N -0.69 -25.73 3.83 -467.24 -1.79 -27.52 16 18 C 0.58 22.79 7.78 86.39 0.67 23.46 16 19 O -0.57 -24.80 16.87 -4.44 -0.07 -24.88 16 20 C 0.00 -0.15 7.03 40.19 0.28 0.13 16 21 C -0.09 -3.27 10.58 22.58 0.24 -3.03 16 22 C -0.07 -2.32 8.20 22.90 0.19 -2.13 16 23 O -0.18 -4.94 10.68 -11.41 -0.12 -5.06 16 24 C 0.03 0.60 12.02 66.96 0.80 1.41 16 25 C -0.22 -5.16 10.89 22.20 0.24 -4.91 16 26 C 0.00 0.06 8.11 39.32 0.32 0.38 16 27 N -0.52 -17.54 6.08 -176.19 -1.07 -18.61 16 28 H 0.43 13.64 8.16 -92.71 -0.76 12.88 16 29 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.05 2.48 6.19 -2.38 -0.01 2.46 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.05 2.02 7.42 -2.39 -0.02 2.01 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.41 15.67 6.48 -92.71 -0.60 15.07 16 41 H 0.16 5.21 8.06 -2.91 -0.02 5.19 16 42 H 0.26 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -64.11 349.01 2.16 -61.94 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.30 Total: 32.64 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.26 Total: 12.23 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -4.63 Total: -122.68 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.20 Total: -29.94 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.11 2.16 -61.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024463828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.340 kcal (2) G-P(sol) polarization free energy of solvation -64.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds