Wall clock time and date at job start Tue Mar 31 2020 11:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99626 * 2 1 4 4 H 1.48500 * 109.47400 * 270.00115 * 3 2 1 5 5 H 1.48498 * 109.47216 * 30.00486 * 3 2 1 6 6 H 1.48497 * 109.46932 * 150.00391 * 3 2 1 7 7 C 1.38811 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00338 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99811 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46837 * 155.00002 * 10 9 7 12 12 C 1.52998 * 109.46931 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47133 * 299.99491 * 12 11 10 14 14 N 1.46497 * 109.47052 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99520 * 155.00383 * 14 13 12 16 16 O 1.21724 * 120.00144 * 359.97438 * 15 14 13 17 17 C 1.46497 * 119.99521 * 180.02562 * 15 14 13 18 18 C 1.37785 * 125.85414 * 179.97438 * 17 15 14 19 19 C 1.39934 * 107.68378 * 180.28339 * 18 17 15 20 20 O 1.35120 * 145.13204 * 180.77908 * 19 18 17 21 21 C 1.34386 * 109.62148 * 179.23458 * 20 19 18 22 22 C 1.34459 * 109.44642 * 359.72463 * 21 20 19 23 23 C 1.39135 * 107.40537 * 359.57663 * 19 18 17 24 24 N 1.37107 * 108.10944 * 0.42554 * 23 19 18 25 25 H 0.97000 * 125.74690 * 179.77707 * 24 23 19 26 26 C 1.53006 * 109.46796 * 60.00426 * 13 12 11 27 27 C 1.52994 * 109.47604 * 274.99752 * 10 9 7 28 28 H 0.96996 * 120.00248 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99503 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47373 * 35.00345 * 10 9 7 31 31 H 1.08996 * 109.46859 * 60.00029 * 11 10 9 32 32 H 1.09000 * 109.46890 * 300.00015 * 11 10 9 33 33 H 1.09000 * 109.46974 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.47442 * 59.99729 * 12 11 10 35 35 H 1.08996 * 109.47475 * 300.00732 * 13 12 11 36 36 H 0.97001 * 120.00563 * 335.00575 * 14 13 12 37 37 H 1.08002 * 126.15458 * 0.02562 * 18 17 15 38 38 H 1.07998 * 125.27405 * 179.72240 * 21 20 19 39 39 H 1.07997 * 126.41176 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.47279 * 60.00068 * 26 13 12 41 41 H 1.09000 * 109.46890 * 179.97438 * 26 13 12 42 42 H 1.08996 * 109.47239 * 300.00674 * 27 10 9 43 43 H 1.09002 * 109.47152 * 59.99823 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.1814 -4.7524 0.6082 12 6 1.9467 -6.0772 0.6076 13 6 2.3099 -6.4558 -0.8297 14 7 3.0433 -7.7240 -0.8302 15 6 3.0343 -8.5071 -1.9271 16 8 2.4165 -8.1608 -2.9171 17 6 3.7671 -9.7756 -1.9274 18 6 3.8394 -10.6657 -2.9767 19 6 4.6286 -11.7453 -2.5648 20 8 5.1661 -12.9294 -2.9319 21 6 5.8856 -13.4331 -1.9148 22 6 5.8368 -12.5878 -0.8702 23 6 5.0371 -11.4882 -1.2598 24 7 4.5039 -10.2849 -0.8756 25 1 4.6243 -9.8619 -0.0110 26 6 3.1867 -5.3601 -1.4395 27 6 2.4210 -4.0350 -1.4390 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 2.9693 -3.5508 0.5871 31 1 0.2703 -4.8584 0.0194 32 1 0.9230 -4.4830 1.6322 33 1 1.3220 -6.8579 1.0416 34 1 2.8577 -5.9709 1.1966 35 1 1.3990 -6.5620 -1.4187 36 1 3.5352 -8.0002 -0.0411 37 1 3.3679 -10.5525 -3.9418 38 1 6.4201 -14.3713 -1.9335 39 1 6.3185 -12.7230 0.0869 40 1 4.0977 -5.2538 -0.8505 41 1 3.4458 -5.6300 -2.4633 42 1 1.5099 -4.1410 -2.0278 43 1 3.0455 -3.2545 -1.8736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026502385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:31 Heat of formation + Delta-G solvation = 1.433034 kcal Electronic energy + Delta-G solvation = -25464.620458 eV Core-core repulsion = 21704.222535 eV Total energy + Delta-G solvation = -3760.397923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.91250 -41.43063 -40.08369 -39.03474 -36.44211 -34.74232 -33.32751 -32.56397 -31.69701 -31.63331 -29.85129 -28.51450 -25.77739 -24.55043 -23.61845 -22.67752 -22.32356 -21.72034 -21.37073 -20.76503 -19.48068 -19.02183 -18.09273 -17.52345 -17.27550 -16.87146 -16.49109 -16.21800 -15.94885 -15.44731 -15.36157 -15.05162 -14.82055 -14.77151 -14.51351 -14.20881 -13.99986 -13.65683 -13.46787 -13.17997 -13.09260 -12.83140 -12.77867 -12.46527 -12.33677 -12.13965 -12.03755 -11.69464 -11.49764 -11.30061 -11.19895 -11.07174 -10.84115 -10.19141 -9.65809 -8.98736 -8.89298 -7.93067 -5.21043 -0.07527 1.19853 1.46671 1.48530 1.49292 1.56471 1.69330 1.73385 2.19338 2.26237 2.56865 3.39722 3.60668 3.66468 3.77527 3.84871 3.89342 3.96677 4.27885 4.30952 4.36496 4.39102 4.46689 4.53558 4.59217 4.63171 4.71366 4.76829 4.83327 4.99519 5.03363 5.08736 5.12748 5.25103 5.27914 5.36149 5.43771 5.50340 5.54643 5.57220 5.64581 6.14716 6.29820 6.30244 6.47180 7.03104 7.35205 8.13418 8.35160 9.30535 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038462 B = 0.002065 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.821059 B =13554.144433 C =13564.538675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.172 3.828 11 C -0.114 4.114 12 C -0.105 4.105 13 C 0.153 3.847 14 N -0.703 5.703 15 C 0.591 3.409 16 O -0.563 6.563 17 C -0.002 4.002 18 C -0.096 4.096 19 C -0.079 4.079 20 O -0.189 6.189 21 C 0.026 3.974 22 C -0.213 4.213 23 C 0.015 3.985 24 N -0.515 5.515 25 H 0.436 0.564 26 C -0.113 4.113 27 C -0.123 4.123 28 H 0.249 0.751 29 H 0.371 0.629 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.154 0.846 38 H 0.258 0.742 39 H 0.185 0.815 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.040 0.960 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.848 -30.260 2.773 33.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.063 3.937 11 C -0.152 4.152 12 C -0.143 4.143 13 C 0.049 3.951 14 N -0.354 5.354 15 C 0.378 3.622 16 O -0.442 6.442 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.130 4.130 20 O -0.087 6.087 21 C -0.041 4.041 22 C -0.234 4.234 23 C -0.100 4.100 24 N -0.121 5.121 25 H 0.277 0.723 26 C -0.153 4.153 27 C -0.164 4.164 28 H 0.058 0.942 29 H 0.203 0.797 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.171 0.829 38 H 0.273 0.727 39 H 0.202 0.798 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.502 -29.885 1.971 32.853 hybrid contribution -0.021 1.514 0.358 1.556 sum 13.481 -28.371 2.329 31.497 Atomic orbital electron populations 1.69818 1.06569 1.25880 1.59916 1.25553 0.96382 1.01062 1.04216 0.85180 0.77820 0.79784 0.77251 1.21835 1.22286 1.19245 1.19621 0.91384 0.85307 1.40364 0.90672 1.42681 1.05467 1.01153 1.88561 1.20507 0.94586 0.85024 0.93535 1.21639 0.98418 0.94066 1.01121 1.21661 1.01879 0.96721 0.94082 1.20942 0.94492 0.81495 0.98176 1.45736 1.52852 1.21015 1.15764 1.16987 0.79750 0.82036 0.83385 1.90889 1.44937 1.73665 1.34671 1.19933 1.05127 0.97103 0.89322 1.20043 1.02105 0.90269 0.99984 1.19433 1.07416 0.90526 0.95579 1.84035 1.55194 1.29529 1.39945 1.25112 0.94909 1.00492 0.83576 1.21007 1.06318 0.92497 1.03543 1.19509 1.03778 0.90983 0.95682 1.40999 1.40683 1.15954 1.14446 0.72254 1.21786 0.98982 0.93850 1.00642 1.22039 0.99053 0.95835 0.99501 0.94173 0.79717 0.93325 0.92796 0.91325 0.89139 0.89156 0.91119 0.75041 0.82865 0.72658 0.79797 0.90412 0.93231 0.94156 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.23 -13.02 9.93 84.03 0.83 -12.19 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.12 5.12 -322.95 -1.65 -38.78 16 10 C 0.17 6.48 2.77 44.99 0.12 6.60 16 11 C -0.11 -3.36 5.39 30.60 0.16 -3.19 16 12 C -0.11 -2.11 5.39 30.59 0.16 -1.94 16 13 C 0.15 3.59 2.45 44.99 0.11 3.70 16 14 N -0.70 -12.71 5.07 -446.65 -2.27 -14.97 16 15 C 0.59 14.18 7.74 86.39 0.67 14.85 16 16 O -0.56 -18.70 16.53 -4.43 -0.07 -18.77 16 17 C 0.00 -0.04 7.03 40.19 0.28 0.24 16 18 C -0.10 -2.21 10.58 22.57 0.24 -1.97 16 19 C -0.08 -1.67 8.20 22.90 0.19 -1.48 16 20 O -0.19 -3.43 10.68 -11.52 -0.12 -3.56 16 21 C 0.03 0.23 12.02 66.95 0.80 1.04 16 22 C -0.21 -2.10 10.89 22.19 0.24 -1.86 16 23 C 0.02 0.25 8.11 39.32 0.32 0.56 16 24 N -0.52 -7.21 6.08 -176.19 -1.07 -8.28 16 25 H 0.44 2.82 8.16 -92.71 -0.76 2.07 16 26 C -0.11 -3.14 5.50 30.61 0.17 -2.97 16 27 C -0.12 -4.45 5.50 30.61 0.17 -4.28 16 28 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.37 20.17 7.80 -92.71 -0.72 19.45 16 30 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 2.03 7.58 -2.39 -0.02 2.02 16 36 H 0.41 4.13 7.69 -92.71 -0.71 3.42 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.26 -0.47 8.06 -2.91 -0.02 -0.50 16 39 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -78.01 359.16 0.94 -77.07 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -1.13 Total: 25.57 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 4.95 Total: -7.08 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -4.71 Total: -121.78 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.20 Total: -22.33 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.01 0.94 -77.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026502385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.504 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds