Wall clock time and date at job start Tue Mar 31 2020 12:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37990 * 120.82482 * 2 1 4 4 C 1.39128 * 119.26325 * 180.27293 * 3 2 1 5 5 O 1.35502 * 119.52547 * 179.69911 * 4 3 2 6 6 N 1.32430 * 120.95167 * 359.72629 * 4 3 2 7 7 C 1.31635 * 121.80263 * 359.97438 * 6 4 3 8 8 C 1.39568 * 120.62333 * 0.02562 * 7 6 4 9 9 C 1.47617 * 120.50156 * 179.97438 * 8 7 6 10 10 O 1.21580 * 120.00234 * 233.29851 * 9 8 7 11 11 N 1.34779 * 119.99690 * 53.30184 * 9 8 7 12 12 C 1.47616 * 120.90201 * 354.22012 * 11 9 8 13 13 C 1.53892 * 107.50445 * 132.49613 * 12 11 9 14 14 H 1.08995 * 112.09537 * 182.66330 * 13 12 11 15 15 C 1.54545 * 108.36330 * 307.00543 * 13 12 11 16 16 C 1.54282 * 104.85097 * 89.29770 * 15 13 12 17 17 C 1.54963 * 104.80623 * 359.80984 * 16 15 13 18 18 H 1.08999 * 112.25614 * 146.60544 * 17 16 15 19 19 C 1.47156 * 120.70743 * 174.90888 * 11 9 8 20 20 N 1.48302 * 107.20742 * 59.11013 * 13 12 11 21 21 C 1.36939 * 128.07441 * 106.10267 * 20 13 12 22 22 H 1.08006 * 119.99444 * 218.95013 * 21 20 13 23 23 C 1.38809 * 120.00154 * 38.94456 * 21 20 13 24 24 N 1.31612 * 120.00014 * 188.73923 * 23 21 20 25 25 Si 1.86793 * 119.99801 * 8.74498 * 23 21 20 26 26 H 1.48501 * 109.47266 * 273.64509 * 25 23 21 27 27 H 1.48501 * 109.47515 * 33.64752 * 25 23 21 28 28 H 1.48502 * 109.47317 * 153.64999 * 25 23 21 29 29 H 1.09002 * 109.47373 * 274.48876 * 1 2 3 30 30 H 1.09005 * 109.47234 * 34.48652 * 1 2 3 31 31 H 1.09000 * 109.47468 * 154.48676 * 1 2 3 32 32 H 1.08001 * 120.36821 * 0.02562 * 3 2 1 33 33 H 0.96698 * 114.00098 * 270.02833 * 5 4 3 34 34 H 1.07996 * 119.69238 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.38740 * 13.37717 * 12 11 9 36 36 H 1.09005 * 110.63595 * 252.31814 * 12 11 9 37 37 H 1.08996 * 110.36245 * 208.13966 * 15 13 12 38 38 H 1.09007 * 110.36459 * 330.45285 * 15 13 12 39 39 H 1.08995 * 110.36457 * 118.83894 * 16 15 13 40 40 H 1.09002 * 110.36028 * 241.04981 * 16 15 13 41 41 H 1.08996 * 109.75303 * 107.60916 * 19 11 9 42 42 H 1.08994 * 109.75267 * 346.86997 * 19 11 9 43 43 H 0.97003 * 120.00039 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1471 -0.0058 5 8 4.3044 2.3075 -0.0120 6 7 4.2547 -0.0068 -0.0058 7 6 3.6204 -1.1602 0.0000 8 6 2.2255 -1.2045 0.0060 9 6 1.5169 -2.4995 0.0121 10 8 0.6695 -2.7327 -0.8280 11 7 1.8094 -3.4232 0.9489 12 6 2.9196 -3.2142 1.8991 13 6 2.3916 -3.5416 3.3070 14 1 3.1426 -3.3666 4.0774 15 6 1.1056 -2.7191 3.5482 16 6 -0.0390 -3.6134 3.0283 17 6 0.6626 -4.8960 2.5146 18 1 0.0526 -5.7873 2.6613 19 6 1.0375 -4.6729 1.0388 20 7 1.9285 -4.9503 3.2854 21 6 2.5320 -6.0462 3.8421 22 1 2.5274 -6.9901 3.3171 23 6 3.1496 -5.9441 5.0810 24 7 3.8751 -6.9422 5.5390 25 14 2.9509 -4.3901 6.0983 26 1 3.9804 -3.3990 5.6943 27 1 1.5987 -3.8196 5.8718 28 1 3.1158 -4.7162 7.5377 29 1 -0.3634 0.0804 1.0245 30 1 -0.3634 0.8471 -0.5819 31 1 -0.3634 -0.9274 -0.4426 32 1 1.6936 2.1313 0.0004 33 1 4.5034 2.6421 -0.8972 34 1 4.1847 -2.0810 0.0002 35 1 3.2394 -2.1730 1.8585 36 1 3.7586 -3.8675 1.6593 37 1 0.9773 -2.5190 4.6119 38 1 1.1419 -1.7851 2.9873 39 1 -0.7301 -3.8530 3.8363 40 1 -0.5667 -3.1183 2.2130 41 1 1.6429 -5.5063 0.6825 42 1 0.1322 -4.5907 0.4373 43 1 4.3064 -6.8709 6.4049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029468829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:55 Heat of formation + Delta-G solvation = 10.248939 kcal Electronic energy + Delta-G solvation = -28005.903290 eV Core-core repulsion = 24245.887654 eV Total energy + Delta-G solvation = -3760.015636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19339 -39.97304 -38.28277 -37.14594 -34.32452 -33.85183 -32.54333 -31.49387 -30.30721 -30.00676 -28.23199 -26.60039 -24.56960 -24.23070 -23.32873 -22.45468 -20.58880 -20.09022 -18.86622 -18.63852 -17.83843 -17.29195 -16.32452 -16.11109 -16.06997 -15.76346 -14.90620 -14.66522 -14.35256 -13.86612 -13.62679 -13.53229 -13.45509 -13.21443 -13.07754 -12.93566 -12.75493 -12.40741 -12.34283 -12.09651 -11.92986 -11.87539 -11.33261 -11.13989 -10.86583 -10.64605 -10.41111 -10.09907 -9.93224 -9.91788 -9.77135 -9.63286 -9.51175 -9.03790 -8.76500 -8.43868 -6.95375 -6.08000 -3.59708 0.49878 0.92907 2.67527 3.09540 3.20149 3.22125 3.36965 3.40273 3.56286 4.30546 4.39751 4.41303 4.49344 4.68241 4.79284 4.98487 5.12247 5.20406 5.29424 5.34585 5.39559 5.42037 5.48105 5.51824 5.54110 5.56734 5.72287 5.81559 5.94742 6.05768 6.10895 6.14416 6.17999 6.24035 6.31119 6.32309 6.34907 6.58440 6.71025 6.86746 7.17218 7.58648 7.63127 7.72557 8.21844 8.24594 8.66922 9.51803 10.14902 11.06691 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.004826 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.567637 B = 5801.074531 C = 6514.360990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.021 3.979 3 C -0.194 4.194 4 C 0.326 3.674 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.162 3.838 8 C -0.185 4.185 9 C 0.564 3.436 10 O -0.545 6.545 11 N -0.581 5.581 12 C 0.090 3.910 13 C 0.117 3.883 14 H 0.085 0.915 15 C -0.130 4.130 16 C -0.125 4.125 17 C 0.135 3.865 18 H 0.092 0.908 19 C 0.104 3.896 20 N -0.594 5.594 21 C -0.246 4.246 22 H 0.086 0.914 23 C 0.037 3.963 24 N -0.906 5.906 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.258 1.258 28 H -0.302 1.302 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.168 0.832 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 15.699 -10.955 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.013 3.987 3 C -0.215 4.215 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.004 3.996 8 C -0.191 4.191 9 C 0.351 3.649 10 O -0.424 6.424 11 N -0.312 5.312 12 C -0.034 4.034 13 C 0.010 3.990 14 H 0.102 0.898 15 C -0.169 4.169 16 C -0.164 4.164 17 C 0.027 3.973 18 H 0.109 0.891 19 C -0.020 4.020 20 N -0.317 5.317 21 C -0.374 4.374 22 H 0.104 0.896 23 C -0.164 4.164 24 N -0.547 5.547 25 Si 0.714 3.286 26 H -0.212 1.212 27 H -0.182 1.182 28 H -0.229 1.229 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.163 0.837 33 H 0.260 0.740 34 H 0.185 0.815 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.393 15.369 -10.558 19.156 hybrid contribution -0.464 1.038 0.318 1.181 sum -4.857 16.407 -10.240 19.941 Atomic orbital electron populations 1.21102 0.89279 1.05367 1.03365 1.20195 0.97256 0.90617 0.90601 1.21902 0.93734 0.99395 1.06478 1.19319 0.87052 0.85214 0.93662 1.84727 1.76033 1.34181 1.33924 1.67186 1.41909 0.98178 1.15298 1.22789 0.90167 0.95352 0.91324 1.20913 0.95442 0.94783 1.07932 1.17872 0.82656 0.83062 0.81352 1.90731 1.34531 1.79419 1.37760 1.48131 1.33004 1.18724 1.31331 1.22813 0.88992 1.00503 0.91120 1.22249 0.95424 0.87534 0.93802 0.89751 1.22604 0.96150 0.97529 1.00620 1.22529 0.97151 0.96974 0.99718 1.22187 0.88915 0.96587 0.89571 0.89051 1.22412 0.95801 0.84568 0.99186 1.45345 1.20137 1.02619 1.63558 1.18536 1.31237 0.88962 0.98627 0.89622 1.25484 0.98112 0.96761 0.96050 1.69731 1.33196 1.31637 1.20171 0.86871 0.79266 0.83330 0.79102 1.21217 1.18233 1.22950 0.90118 0.90605 0.88477 0.83702 0.74007 0.81513 0.91056 0.90143 0.91827 0.92739 0.92114 0.92464 0.91191 0.89883 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.74 36.00 0.35 -1.05 16 2 C 0.02 0.26 5.94 -103.96 -0.62 -0.36 16 3 C -0.19 -2.03 9.74 -39.34 -0.38 -2.41 16 4 C 0.33 3.83 7.74 -16.96 -0.13 3.70 16 5 O -0.48 -4.70 13.55 -18.20 -0.25 -4.94 16 6 N -0.51 -6.88 10.37 -12.97 -0.13 -7.01 16 7 C 0.16 2.15 8.64 -17.14 -0.15 2.00 16 8 C -0.19 -2.54 4.92 -104.82 -0.52 -3.05 16 9 C 0.56 8.78 6.67 -12.43 -0.08 8.70 16 10 O -0.54 -9.58 14.61 5.30 0.08 -9.50 16 11 N -0.58 -9.33 2.24 -172.36 -0.39 -9.72 16 12 C 0.09 1.50 4.90 -2.97 -0.01 1.48 16 13 C 0.12 2.29 2.83 -65.66 -0.19 2.10 16 14 H 0.08 1.82 4.06 -51.93 -0.21 1.61 16 15 C -0.13 -2.27 5.82 -25.25 -0.15 -2.41 16 16 C -0.12 -2.06 6.21 -25.02 -0.16 -2.22 16 17 C 0.13 2.45 4.33 -65.43 -0.28 2.16 16 18 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 19 C 0.10 1.72 5.88 -3.22 -0.02 1.70 16 20 N -0.59 -12.96 2.33 -152.35 -0.36 -13.31 16 21 C -0.25 -6.46 10.74 -15.06 -0.16 -6.62 16 22 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 23 C 0.04 1.02 5.50 -17.43 -0.10 0.92 16 24 N -0.91 -26.69 13.97 55.49 0.78 -25.92 16 25 Si 0.88 21.22 24.72 -169.99 -4.20 17.01 16 26 H -0.28 -6.65 6.56 56.52 0.37 -6.28 16 27 H -0.26 -5.91 5.25 56.52 0.30 -5.61 16 28 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.10 1.22 5.67 -51.93 -0.29 0.93 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.40 1.76 9.06 45.56 0.41 2.18 16 34 H 0.17 2.03 7.25 -52.49 -0.38 1.65 16 35 H 0.07 1.07 5.00 -51.93 -0.26 0.81 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 38 H 0.05 0.85 7.86 -51.92 -0.41 0.45 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.31 7.16 -51.93 -0.37 0.94 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -32.00 333.98 -6.94 -38.94 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.91 Total: 4.77 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.59 Total: 4.65 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.10 Total: -55.96 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.17 Total: -14.45 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.20 Total: 17.01 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.00 -6.94 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029468829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.187 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds