Wall clock time and date at job start Tue Mar 31 2020 12:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37990 * 120.82482 * 2 1 4 4 C 1.39128 * 119.26325 * 180.27293 * 3 2 1 5 5 O 1.35502 * 119.52547 * 179.69911 * 4 3 2 6 6 N 1.32430 * 120.95167 * 359.72629 * 4 3 2 7 7 C 1.31635 * 121.80263 * 359.97438 * 6 4 3 8 8 C 1.39568 * 120.62333 * 0.02562 * 7 6 4 9 9 C 1.47617 * 120.50156 * 179.97438 * 8 7 6 10 10 O 1.21580 * 120.00234 * 233.29851 * 9 8 7 11 11 N 1.34779 * 119.99690 * 53.30184 * 9 8 7 12 12 C 1.47616 * 120.90201 * 354.22012 * 11 9 8 13 13 C 1.53892 * 107.50445 * 132.49613 * 12 11 9 14 14 H 1.08995 * 112.09537 * 182.66330 * 13 12 11 15 15 C 1.54545 * 108.36330 * 307.00543 * 13 12 11 16 16 C 1.54282 * 104.85097 * 89.29770 * 15 13 12 17 17 C 1.54963 * 104.80623 * 359.80984 * 16 15 13 18 18 H 1.08999 * 112.25614 * 146.60544 * 17 16 15 19 19 C 1.47156 * 120.70743 * 174.90888 * 11 9 8 20 20 N 1.48302 * 107.20742 * 59.11013 * 13 12 11 21 21 C 1.36939 * 128.07441 * 106.10267 * 20 13 12 22 22 H 1.08006 * 119.99444 * 218.95013 * 21 20 13 23 23 C 1.38809 * 120.00154 * 38.94456 * 21 20 13 24 24 N 1.31612 * 120.00014 * 188.73923 * 23 21 20 25 25 Si 1.86793 * 119.99801 * 8.74498 * 23 21 20 26 26 H 1.48501 * 109.47266 * 273.64509 * 25 23 21 27 27 H 1.48501 * 109.47515 * 33.64752 * 25 23 21 28 28 H 1.48502 * 109.47317 * 153.64999 * 25 23 21 29 29 H 1.09002 * 109.47373 * 274.48876 * 1 2 3 30 30 H 1.09005 * 109.47234 * 34.48652 * 1 2 3 31 31 H 1.09000 * 109.47468 * 154.48676 * 1 2 3 32 32 H 1.08001 * 120.36821 * 0.02562 * 3 2 1 33 33 H 0.96698 * 114.00098 * 270.02833 * 5 4 3 34 34 H 1.07996 * 119.69238 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.38740 * 13.37717 * 12 11 9 36 36 H 1.09005 * 110.63595 * 252.31814 * 12 11 9 37 37 H 1.08996 * 110.36245 * 208.13966 * 15 13 12 38 38 H 1.09007 * 110.36459 * 330.45285 * 15 13 12 39 39 H 1.08995 * 110.36457 * 118.83894 * 16 15 13 40 40 H 1.09002 * 110.36028 * 241.04981 * 16 15 13 41 41 H 1.08996 * 109.75303 * 107.60916 * 19 11 9 42 42 H 1.08994 * 109.75267 * 346.86997 * 19 11 9 43 43 H 0.97003 * 120.00039 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1471 -0.0058 5 8 4.3044 2.3075 -0.0120 6 7 4.2547 -0.0068 -0.0058 7 6 3.6204 -1.1602 0.0000 8 6 2.2255 -1.2045 0.0060 9 6 1.5169 -2.4995 0.0121 10 8 0.6695 -2.7327 -0.8280 11 7 1.8094 -3.4232 0.9489 12 6 2.9196 -3.2142 1.8991 13 6 2.3916 -3.5416 3.3070 14 1 3.1426 -3.3666 4.0774 15 6 1.1056 -2.7191 3.5482 16 6 -0.0390 -3.6134 3.0283 17 6 0.6626 -4.8960 2.5146 18 1 0.0526 -5.7873 2.6613 19 6 1.0375 -4.6729 1.0388 20 7 1.9285 -4.9503 3.2854 21 6 2.5320 -6.0462 3.8421 22 1 2.5274 -6.9901 3.3171 23 6 3.1496 -5.9441 5.0810 24 7 3.8751 -6.9422 5.5390 25 14 2.9509 -4.3901 6.0983 26 1 3.9804 -3.3990 5.6943 27 1 1.5987 -3.8196 5.8718 28 1 3.1158 -4.7162 7.5377 29 1 -0.3634 0.0804 1.0245 30 1 -0.3634 0.8471 -0.5819 31 1 -0.3634 -0.9274 -0.4426 32 1 1.6936 2.1313 0.0004 33 1 4.5034 2.6421 -0.8972 34 1 4.1847 -2.0810 0.0002 35 1 3.2394 -2.1730 1.8585 36 1 3.7586 -3.8675 1.6593 37 1 0.9773 -2.5190 4.6119 38 1 1.1419 -1.7851 2.9873 39 1 -0.7301 -3.8530 3.8363 40 1 -0.5667 -3.1183 2.2130 41 1 1.6429 -5.5063 0.6825 42 1 0.1322 -4.5907 0.4373 43 1 4.3064 -6.8709 6.4049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029468829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:54 Heat of formation + Delta-G solvation = -14.081668 kcal Electronic energy + Delta-G solvation = -28006.958344 eV Core-core repulsion = 24245.887654 eV Total energy + Delta-G solvation = -3761.070690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28942 -41.14924 -39.55343 -38.02352 -35.65420 -34.90602 -34.37967 -32.81655 -31.75433 -31.39621 -29.08209 -28.01156 -25.93050 -25.59260 -24.76217 -23.37021 -21.98596 -21.44670 -20.40149 -19.47007 -19.10412 -18.50550 -17.80529 -17.55603 -17.17617 -16.83047 -16.49340 -15.66361 -15.50255 -15.22687 -15.09232 -14.87144 -14.81570 -14.66555 -14.13019 -14.00096 -13.86391 -13.77038 -13.50143 -13.33470 -13.09080 -13.01428 -12.83043 -12.71619 -12.45563 -12.26496 -11.92893 -11.62082 -11.58420 -11.26727 -11.16381 -10.71384 -10.63813 -10.51231 -9.99493 -9.89079 -8.75067 -8.18630 -5.66682 -0.41959 0.05182 1.28575 1.39983 1.49653 1.51739 1.88133 2.36142 2.40116 2.66382 3.04684 3.15234 3.29549 3.49399 3.58070 3.83384 3.87910 3.95606 4.04979 4.09726 4.18348 4.19930 4.38549 4.41430 4.54353 4.59157 4.66368 4.68091 4.70970 4.73409 4.82812 4.86110 4.93490 4.98195 5.05434 5.19160 5.25206 5.33962 5.40426 5.48549 5.83430 6.14759 6.34532 6.53555 6.70677 6.77235 7.00780 7.46186 8.21116 8.99982 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.004826 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.567637 B = 5801.074531 C = 6514.360990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.021 3.979 3 C -0.182 4.182 4 C 0.326 3.674 5 O -0.487 6.487 6 N -0.531 5.531 7 C 0.157 3.843 8 C -0.204 4.204 9 C 0.573 3.427 10 O -0.564 6.564 11 N -0.583 5.583 12 C 0.103 3.897 13 C 0.108 3.892 14 H 0.066 0.934 15 C -0.124 4.124 16 C -0.115 4.115 17 C 0.130 3.870 18 H 0.089 0.911 19 C 0.113 3.887 20 N -0.612 5.612 21 C -0.229 4.229 22 H 0.049 0.951 23 C -0.020 4.020 24 N -0.957 5.957 25 Si 0.942 3.058 26 H -0.275 1.275 27 H -0.238 1.238 28 H -0.315 1.315 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.178 0.822 33 H 0.425 0.575 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 19.563 -11.859 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.013 3.987 3 C -0.203 4.203 4 C 0.148 3.852 5 O -0.298 6.298 6 N -0.251 5.251 7 C -0.001 4.001 8 C -0.210 4.210 9 C 0.361 3.639 10 O -0.445 6.445 11 N -0.313 5.313 12 C -0.022 4.022 13 C 0.001 3.999 14 H 0.084 0.916 15 C -0.163 4.163 16 C -0.153 4.153 17 C 0.024 3.976 18 H 0.107 0.893 19 C -0.011 4.011 20 N -0.335 5.335 21 C -0.358 4.358 22 H 0.067 0.933 23 C -0.216 4.216 24 N -0.602 5.602 25 Si 0.771 3.229 26 H -0.202 1.202 27 H -0.161 1.161 28 H -0.244 1.244 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.196 0.804 33 H 0.287 0.713 34 H 0.185 0.815 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.887 19.288 -11.524 23.227 hybrid contribution 0.008 -0.110 0.420 0.434 sum -5.879 19.178 -11.105 22.928 Atomic orbital electron populations 1.21118 0.88061 1.05325 1.04311 1.20455 0.98143 0.90324 0.89793 1.22150 0.93110 1.00174 1.04847 1.19577 0.87826 0.85187 0.92590 1.84679 1.75859 1.33216 1.36062 1.67195 1.42663 0.98819 1.16417 1.22775 0.90135 0.95579 0.91601 1.20788 0.95541 0.94338 1.10303 1.18077 0.82085 0.83335 0.80403 1.90725 1.35540 1.79885 1.38330 1.48089 1.32876 1.18719 1.31649 1.22589 0.88624 1.01501 0.89462 1.22384 0.96324 0.86267 0.94900 0.91627 1.22567 0.94806 0.98122 1.00814 1.22460 0.96825 0.95615 1.00443 1.22341 0.87614 0.97786 0.89857 0.89307 1.22215 0.96152 0.84678 0.98091 1.45362 1.21885 1.02576 1.63723 1.18341 1.30101 0.89233 0.98079 0.93346 1.26104 0.98450 0.99745 0.97326 1.69878 1.35451 1.34183 1.20692 0.85925 0.80371 0.80089 0.76470 1.20173 1.16145 1.24381 0.88997 0.87928 0.90771 0.80448 0.71295 0.81537 0.88872 0.91352 0.92221 0.90400 0.91665 0.90409 0.92641 0.88591 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.74 71.23 0.69 -1.51 16 2 C 0.02 0.42 5.94 -19.43 -0.12 0.31 16 3 C -0.18 -3.04 9.74 22.42 0.22 -2.82 16 4 C 0.33 6.60 7.74 84.82 0.66 7.26 16 5 O -0.49 -7.81 13.55 -88.03 -1.19 -9.00 16 6 N -0.53 -13.25 10.37 -307.80 -3.19 -16.44 16 7 C 0.16 3.89 8.64 85.04 0.74 4.63 16 8 C -0.20 -5.09 4.92 -19.99 -0.10 -5.19 16 9 C 0.57 16.70 6.67 86.72 0.58 17.28 16 10 O -0.56 -18.82 14.61 -3.97 -0.06 -18.88 16 11 N -0.58 -17.82 2.24 -817.48 -1.83 -19.64 16 12 C 0.10 3.29 4.90 86.47 0.42 3.71 16 13 C 0.11 4.05 2.83 45.47 0.13 4.18 16 14 H 0.07 2.74 4.06 -2.39 -0.01 2.73 16 15 C -0.12 -3.94 5.82 31.55 0.18 -3.75 16 16 C -0.11 -3.46 6.21 31.70 0.20 -3.26 16 17 C 0.13 4.60 4.33 45.61 0.20 4.80 16 18 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 19 C 0.11 3.62 5.88 86.55 0.51 4.13 16 20 N -0.61 -26.62 2.33 -635.91 -1.48 -28.11 16 21 C -0.23 -12.38 10.74 84.03 0.90 -11.48 16 22 H 0.05 2.93 8.06 -2.91 -0.02 2.90 16 23 C -0.02 -1.13 5.50 84.86 0.47 -0.67 16 24 N -0.96 -58.74 13.97 21.65 0.30 -58.44 16 25 Si 0.94 44.29 24.72 68.60 1.70 45.98 16 26 H -0.27 -12.33 6.56 99.48 0.65 -11.68 16 27 H -0.24 -10.26 5.25 99.48 0.52 -9.73 16 28 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.15 8.13 -2.38 -0.02 1.13 16 31 H 0.07 1.64 5.67 -2.39 -0.01 1.63 16 32 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.42 2.24 9.06 -74.06 -0.67 1.57 16 34 H 0.17 3.93 7.25 -2.91 -0.02 3.91 16 35 H 0.09 2.61 5.00 -2.39 -0.01 2.60 16 36 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.06 1.95 6.50 -2.39 -0.02 1.94 16 38 H 0.08 2.12 7.86 -2.38 -0.02 2.10 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 2.06 7.85 -2.39 -0.02 2.04 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 2.87 7.16 -2.39 -0.02 2.86 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -70.67 333.98 0.07 -70.60 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.15 Total: 16.32 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 5.68 Total: 17.61 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.20 Total: -122.64 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.25 Total: -27.88 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.70 Total: 45.98 kcal Total: -70.67 0.07 -70.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029468829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.521 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds