Wall clock time and date at job start Tue Mar 31 2020 11:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38346 * 119.40738 * 2 1 4 4 C 1.38337 * 119.45701 * 179.72182 * 3 2 1 5 5 C 1.39993 * 118.34859 * 0.49470 * 4 3 2 6 6 C 1.47531 * 120.59762 * 179.78246 * 5 4 3 7 7 O 1.21585 * 119.99812 * 227.15740 * 6 5 4 8 8 N 1.34777 * 120.00013 * 47.15902 * 6 5 4 9 9 C 1.47622 * 120.89917 * 4.49482 * 8 6 5 10 10 C 1.53896 * 107.50024 * 132.49612 * 9 8 6 11 11 H 1.08996 * 112.09428 * 182.66459 * 10 9 8 12 12 C 1.54547 * 108.36294 * 307.00522 * 10 9 8 13 13 C 1.54277 * 104.85084 * 89.29796 * 12 10 9 14 14 C 1.54961 * 104.80694 * 359.81373 * 13 12 10 15 15 H 1.08999 * 112.25414 * 146.61031 * 14 13 12 16 16 C 1.47159 * 120.70941 * 185.17977 * 8 6 5 17 17 N 1.48307 * 107.20909 * 59.10965 * 10 9 8 18 18 C 1.36936 * 128.07607 * 106.09715 * 17 10 9 19 19 H 1.07997 * 119.99697 * 17.81513 * 18 17 10 20 20 C 1.38813 * 119.99834 * 197.81553 * 18 17 10 21 21 N 1.31615 * 120.00094 * 358.17721 * 20 18 17 22 22 Si 1.86805 * 119.99709 * 178.17843 * 20 18 17 23 23 H 1.48497 * 109.46772 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47040 * 299.99638 * 22 20 18 25 25 H 1.48505 * 109.46993 * 59.99784 * 22 20 18 26 26 C 1.40275 * 118.80413 * 359.50807 * 5 4 3 27 27 O 1.35429 * 119.79961 * 180.23319 * 26 5 4 28 28 N 1.31876 * 119.40293 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47398 * 270.02431 * 1 2 3 30 30 H 1.09006 * 109.46718 * 30.02395 * 1 2 3 31 31 H 1.08998 * 109.47595 * 150.02178 * 1 2 3 32 32 H 1.08000 * 120.27664 * 359.97438 * 3 2 1 33 33 H 1.08008 * 120.83054 * 180.25736 * 4 3 2 34 34 H 1.08990 * 109.38965 * 13.38335 * 9 8 6 35 35 H 1.08999 * 110.63615 * 252.31703 * 9 8 6 36 36 H 1.09007 * 110.36106 * 208.13996 * 12 10 9 37 37 H 1.08999 * 110.36559 * 330.44820 * 12 10 9 38 38 H 1.09002 * 110.35980 * 118.84026 * 13 12 10 39 39 H 1.08996 * 110.36234 * 241.04213 * 13 12 10 40 40 H 1.09003 * 109.74703 * 107.61099 * 16 8 6 41 41 H 1.09001 * 109.79335 * 346.90441 * 16 8 6 42 42 H 0.97003 * 119.99975 * 180.02562 * 21 20 18 43 43 H 0.96697 * 114.00513 * 90.00119 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2064 0.0058 5 6 4.2355 -0.0250 0.0010 6 6 5.7097 -0.0816 0.0020 7 8 6.2904 -0.8170 -0.7728 8 7 6.4128 0.6818 0.8619 9 6 5.7287 1.5071 1.8768 10 6 6.4333 1.2633 3.2231 11 1 5.9557 1.8047 4.0397 12 6 6.4783 -0.2599 3.4803 13 6 7.7944 -0.7323 2.8285 14 6 8.4237 0.5517 2.2312 15 1 9.5129 0.5328 2.2672 16 6 7.8825 0.7236 0.8009 17 7 7.8548 1.6493 3.0505 18 6 8.4920 2.7623 3.5305 19 1 8.0511 3.3320 4.3351 20 6 9.7045 3.1582 2.9829 21 7 10.2594 2.4438 2.0268 22 14 10.5486 4.7050 3.6029 23 1 11.8195 4.9064 2.8615 24 1 9.6590 5.8744 3.3880 25 1 10.8388 4.5635 5.0524 26 6 3.4757 -1.2042 0.0009 27 8 4.0991 -2.4065 0.0010 28 7 2.1545 -1.1489 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6412 2.1375 -0.0004 33 1 4.1224 2.1343 0.0101 34 1 4.6846 1.2023 1.9472 35 1 5.7878 2.5638 1.6162 36 1 6.4909 -0.4635 4.5511 37 1 5.6252 -0.7493 3.0104 38 1 8.4541 -1.1681 3.5789 39 1 7.5887 -1.4554 2.0394 40 1 8.2073 1.6826 0.3971 41 1 8.2489 -0.0852 0.1687 42 1 11.1069 2.7203 1.6444 43 1 4.2800 -2.7557 0.8844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029491394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:22 Heat of formation + Delta-G solvation = -15.969850 kcal Electronic energy + Delta-G solvation = -27862.545781 eV Core-core repulsion = 24101.393213 eV Total energy + Delta-G solvation = -3761.152568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16107 -40.98002 -39.21499 -38.27736 -35.58522 -34.40973 -33.83628 -32.60216 -32.13086 -31.07134 -29.17193 -27.63488 -25.63118 -25.56040 -24.32313 -23.74519 -21.66262 -21.25747 -20.48761 -19.69394 -18.89029 -18.03443 -17.85488 -17.15880 -16.82704 -16.59350 -16.45391 -15.59031 -15.52502 -15.05757 -14.98307 -14.69813 -14.53894 -14.47940 -14.24491 -13.59597 -13.55414 -13.37421 -13.25148 -13.06184 -12.94837 -12.81668 -12.73641 -12.66251 -12.60545 -12.01737 -11.86481 -11.59989 -11.44548 -11.20881 -11.16149 -10.83659 -10.73345 -10.45365 -9.88724 -9.71955 -8.69439 -7.81993 -5.23048 -0.36349 0.06937 1.51305 1.51720 1.58287 1.64020 1.97951 2.42281 2.51671 2.64309 3.33473 3.36992 3.49424 3.65012 3.71739 3.97106 4.06289 4.10240 4.21384 4.27892 4.31542 4.34069 4.43563 4.58111 4.69119 4.70957 4.82008 4.85924 4.94700 4.96820 5.02246 5.03943 5.06931 5.11060 5.17293 5.28359 5.37070 5.52864 5.53716 5.57805 5.83332 6.26369 6.45232 6.53403 6.82308 7.06942 7.12544 7.73499 8.52437 9.26848 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.004030 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.304662 B = 6946.399885 C = 7389.653491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.163 3.837 3 C -0.171 4.171 4 C -0.027 4.027 5 C -0.214 4.214 6 C 0.558 3.442 7 O -0.579 6.579 8 N -0.584 5.584 9 C 0.101 3.899 10 C 0.128 3.872 11 H 0.096 0.904 12 C -0.110 4.110 13 C -0.130 4.130 14 C 0.163 3.837 15 H 0.090 0.910 16 C 0.129 3.871 17 N -0.603 5.603 18 C -0.233 4.233 19 H 0.084 0.916 20 C -0.053 4.053 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.301 1.301 24 H -0.278 1.278 25 H -0.280 1.280 26 C 0.349 3.651 27 O -0.486 6.486 28 N -0.526 5.526 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.187 0.813 33 H 0.155 0.845 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.247 0.753 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.026 -1.692 0.782 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.025 3.975 3 C -0.191 4.191 4 C -0.053 4.053 5 C -0.220 4.220 6 C 0.346 3.654 7 O -0.460 6.460 8 N -0.315 5.315 9 C -0.023 4.023 10 C 0.020 3.980 11 H 0.114 0.886 12 C -0.149 4.149 13 C -0.169 4.169 14 C 0.055 3.945 15 H 0.107 0.893 16 C 0.005 3.995 17 N -0.325 5.325 18 C -0.361 4.361 19 H 0.101 0.899 20 C -0.247 4.247 21 N -0.587 5.587 22 Si 0.801 3.199 23 H -0.228 1.228 24 H -0.204 1.204 25 H -0.206 1.206 26 C 0.170 3.830 27 O -0.295 6.295 28 N -0.247 5.247 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.204 0.796 33 H 0.172 0.828 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -19.914 -2.665 -0.191 20.093 hybrid contribution 1.987 1.220 0.342 2.356 sum -17.928 -1.445 0.151 17.986 Atomic orbital electron populations 1.20948 0.85323 1.04984 1.04880 1.21985 0.98804 0.86785 0.89957 1.22300 0.93297 1.00926 1.02529 1.21981 0.95565 0.96355 0.91365 1.20886 0.93375 0.95894 1.11879 1.18326 0.87092 0.79716 0.80253 1.90752 1.71994 1.41320 1.41925 1.48232 1.07048 1.43528 1.32664 1.22766 0.96314 0.94427 0.88780 1.22227 0.85963 0.94719 0.95044 0.88623 1.22386 0.96562 0.95686 1.00286 1.22603 0.97633 0.97517 0.99139 1.21922 0.98658 0.86028 0.87914 0.89264 1.21979 0.78231 0.99554 0.99756 1.45321 1.04841 1.21714 1.60619 1.19286 1.02892 1.01369 1.12577 0.89861 1.25594 0.99767 1.01157 0.98199 1.69962 1.18893 1.40039 1.29764 0.85269 0.77210 0.80154 0.77297 1.22817 1.20399 1.20636 1.19132 0.86715 0.84521 0.92654 1.84727 1.76922 1.32803 1.35043 1.67158 1.08502 1.32103 1.16906 0.88139 0.87393 0.90786 0.79585 0.82782 0.88175 0.91770 0.91190 0.91405 0.92770 0.92983 0.93972 0.92555 0.94372 0.72451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.16 71.24 0.72 -0.28 16 2 C 0.16 2.95 6.78 42.58 0.29 3.24 16 3 C -0.17 -2.65 9.71 22.32 0.22 -2.43 16 4 C -0.03 -0.59 7.75 22.72 0.18 -0.41 16 5 C -0.21 -6.31 4.87 -19.91 -0.10 -6.41 16 6 C 0.56 20.88 7.01 86.69 0.61 21.48 16 7 O -0.58 -26.59 15.95 5.94 0.09 -26.49 16 8 N -0.58 -21.71 2.24 -817.57 -1.83 -23.54 16 9 C 0.10 3.16 4.62 86.47 0.40 3.56 16 10 C 0.13 4.44 4.27 45.47 0.19 4.64 16 11 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 12 C -0.11 -3.50 6.18 31.55 0.20 -3.30 16 13 C -0.13 -4.93 6.21 31.70 0.20 -4.73 16 14 C 0.16 7.45 3.18 45.61 0.14 7.60 16 15 H 0.09 4.82 6.13 -2.39 -0.01 4.81 16 16 C 0.13 5.82 5.88 86.55 0.51 6.33 16 17 N -0.60 -27.57 2.81 -635.92 -1.79 -29.36 16 18 C -0.23 -11.75 10.38 84.03 0.87 -10.88 16 19 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.05 -2.78 5.49 84.86 0.47 -2.32 16 21 N -0.94 -52.63 10.44 21.65 0.23 -52.40 16 22 Si 0.97 43.11 29.55 68.60 2.03 45.14 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.35 10.24 7.75 85.13 0.66 10.90 16 27 O -0.49 -14.73 12.57 -77.32 -0.97 -15.70 16 28 N -0.53 -13.47 10.28 -296.06 -3.04 -16.51 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.46 8.07 -2.38 -0.02 0.44 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.15 3.06 7.24 -2.91 -0.02 3.04 16 34 H 0.10 2.45 5.44 -2.39 -0.01 2.44 16 35 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 36 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 37 H 0.07 1.89 7.86 -2.39 -0.02 1.87 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.97 7.85 -2.39 -0.02 1.95 16 40 H 0.04 2.17 8.05 -2.39 -0.02 2.15 16 41 H 0.06 2.66 7.08 -2.39 -0.02 2.65 16 42 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 43 H 0.41 8.70 9.06 -74.06 -0.67 8.03 16 Total: -1.00 -72.08 345.21 0.64 -71.43 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.37 Total: 20.45 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 5.55 Total: 26.98 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -6.43 Total: -121.81 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.88 Total: -42.19 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -72.08 0.64 -71.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029491394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.461 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds