Wall clock time and date at job start Tue Mar 31 2020 11:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 119.99984 * 2 1 4 4 N 1.34779 * 119.99840 * 180.02562 * 2 1 3 5 5 C 1.39958 * 119.99873 * 185.42575 * 4 2 1 6 6 C 1.38985 * 119.99664 * 31.50193 * 5 4 2 7 7 C 1.38212 * 120.22068 * 179.97438 * 6 5 4 8 8 C 1.38026 * 120.22424 * 359.76956 * 7 6 5 9 9 C 1.39578 * 119.99214 * 0.48629 * 8 7 6 10 10 C 1.47860 * 120.10665 * 179.76382 * 9 8 7 11 11 O 1.21557 * 119.99603 * 181.77561 * 10 9 8 12 12 N 1.34765 * 120.00189 * 1.77925 * 10 9 8 13 13 C 1.46506 * 119.99827 * 179.97438 * 12 10 9 14 14 C 1.53496 * 114.20376 * 155.00041 * 13 12 10 15 15 N 1.47065 * 87.98541 * 87.52478 * 14 13 12 16 16 C 1.36938 * 136.05734 * 207.08975 * 15 14 13 17 17 H 1.08006 * 120.00028 * 354.34041 * 16 15 14 18 18 C 1.38814 * 120.00288 * 174.34310 * 16 15 14 19 19 N 1.31612 * 120.00152 * 182.30619 * 18 16 15 20 20 Si 1.86802 * 119.99432 * 2.30960 * 18 16 15 21 21 H 1.48499 * 109.46816 * 173.47996 * 20 18 16 22 22 H 1.48498 * 109.47290 * 293.47682 * 20 18 16 23 23 H 1.48497 * 109.47501 * 53.48008 * 20 18 16 24 24 C 1.47060 * 87.88442 * 27.34070 * 15 14 13 25 25 C 1.38593 * 120.00009 * 211.48652 * 5 4 2 26 26 C 1.50699 * 120.11304 * 0.02562 * 25 5 4 27 27 H 1.09005 * 109.46808 * 269.99265 * 1 2 3 28 28 H 1.08994 * 109.47370 * 29.99476 * 1 2 3 29 29 H 1.09005 * 109.47200 * 149.99588 * 1 2 3 30 30 H 0.96996 * 120.00072 * 5.42791 * 4 2 1 31 31 H 1.07999 * 119.89126 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.88583 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.00268 * 180.27842 * 8 7 6 34 34 H 0.96996 * 120.00484 * 359.97438 * 12 10 9 35 35 H 1.08999 * 113.28397 * 21.94082 * 13 12 10 36 36 H 1.09005 * 113.47001 * 332.74428 * 14 13 12 37 37 H 1.08999 * 113.47053 * 202.30051 * 14 13 12 38 38 H 0.96997 * 120.00143 * 5.02118 * 19 18 16 39 39 H 1.08997 * 113.46910 * 87.44406 * 24 15 14 40 40 H 1.09002 * 113.46576 * 217.87925 * 24 15 14 41 41 H 1.09000 * 109.47407 * 262.05331 * 26 25 5 42 42 H 1.09008 * 109.46915 * 22.04186 * 26 25 5 43 43 H 1.08997 * 109.47659 * 142.04321 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5758 -1.1700 0.1141 6 6 4.2148 -0.1763 0.8461 7 6 5.5920 -0.1749 0.9627 8 6 6.3416 -1.1630 0.3570 9 6 5.7097 -2.1623 -0.3847 10 6 6.5107 -3.2190 -1.0390 11 8 5.9611 -4.0698 -1.7112 12 7 7.8499 -3.2391 -0.8900 13 6 8.6434 -4.2865 -1.5379 14 6 10.1019 -3.8933 -1.8102 15 7 10.4288 -4.3713 -0.4583 16 6 11.3819 -4.0893 0.4836 17 1 12.1868 -3.4080 0.2502 18 6 11.3137 -4.6790 1.7384 19 7 12.2037 -4.3733 2.6585 20 14 9.9586 -5.9067 2.1208 21 1 10.1962 -6.5051 3.4589 22 1 8.6458 -5.2127 2.1150 23 1 9.9567 -6.9781 1.0926 24 6 9.2853 -5.2898 -0.5657 25 6 4.3197 -2.1638 -0.5021 26 6 3.6294 -3.2424 -1.2966 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6992 -2.0053 -0.0804 31 1 3.6333 0.5969 1.3260 32 1 6.0829 0.5997 1.5332 33 1 7.4172 -1.1609 0.4543 34 1 8.2885 -2.5600 -0.3540 35 1 8.1384 -4.7462 -2.3874 36 1 10.2458 -2.8204 -1.9379 37 1 10.5688 -4.4789 -2.6022 38 1 12.8628 -3.6831 2.4853 39 1 9.5368 -6.2436 -1.0296 40 1 8.7334 -5.4067 0.3670 41 1 3.5184 -4.1338 -0.6792 42 1 2.6454 -2.8912 -1.6076 43 1 4.2247 -3.4822 -2.1775 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031255600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:07 Heat of formation + Delta-G solvation = 29.453871 kcal Electronic energy + Delta-G solvation = -26251.655751 eV Core-core repulsion = 22492.472903 eV Total energy + Delta-G solvation = -3759.182848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02881 -39.99202 -38.71166 -37.59747 -35.20560 -33.63807 -32.49291 -32.24282 -31.16393 -29.21116 -27.80268 -26.95239 -25.42471 -24.23774 -22.82799 -21.61003 -21.35409 -20.10265 -19.50652 -18.35839 -17.52337 -17.36753 -16.31328 -16.19354 -16.05223 -15.60723 -15.16213 -14.79472 -14.75323 -14.35525 -13.94631 -13.87793 -13.53440 -13.42745 -13.23895 -13.09492 -12.95378 -12.72469 -12.37464 -12.18910 -12.02848 -12.00033 -11.44693 -11.38009 -11.05996 -10.67771 -10.62568 -10.34169 -10.24265 -9.48775 -9.44694 -9.16023 -8.98083 -8.93196 -8.47846 -8.28979 -7.22003 -6.34647 -3.28901 0.80394 1.10276 2.20568 2.68424 2.97859 3.35975 3.40166 3.43661 3.63707 3.79596 4.29618 4.55693 4.66669 4.68879 4.70038 4.75046 4.87428 4.90513 4.97598 5.11461 5.21900 5.29617 5.37997 5.40037 5.52756 5.66061 5.71798 5.82521 5.89327 6.01709 6.10836 6.15162 6.16715 6.18987 6.28303 6.33019 6.34863 6.49812 6.78928 6.96378 7.02157 7.03699 7.72254 7.79645 8.18847 8.40992 8.92853 9.45064 10.30096 11.16819 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.003173 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.570109 B = 8823.248192 C = 9241.863254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.527 6.527 4 N -0.669 5.669 5 C 0.127 3.873 6 C -0.095 4.095 7 C -0.114 4.114 8 C -0.091 4.091 9 C -0.118 4.118 10 C 0.561 3.439 11 O -0.541 6.541 12 N -0.689 5.689 13 C 0.100 3.900 14 C 0.114 3.886 15 N -0.628 5.628 16 C -0.305 4.305 17 H 0.082 0.918 18 C -0.022 4.022 19 N -0.934 5.934 20 Si 1.073 2.927 21 H -0.296 1.296 22 H -0.293 1.293 23 H -0.290 1.290 24 C 0.080 3.920 25 C -0.049 4.049 26 C -0.123 4.123 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.412 0.588 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.407 0.593 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.261 0.739 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.506 6.700 -6.591 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.403 6.403 4 N -0.316 5.316 5 C 0.033 3.967 6 C -0.115 4.115 7 C -0.132 4.132 8 C -0.110 4.110 9 C -0.122 4.122 10 C 0.349 3.651 11 O -0.421 6.421 12 N -0.338 5.338 13 C -0.006 4.006 14 C -0.013 4.013 15 N -0.357 5.357 16 C -0.431 4.431 17 H 0.100 0.900 18 C -0.221 4.221 19 N -0.576 5.576 20 Si 0.907 3.093 21 H -0.224 1.224 22 H -0.221 1.221 23 H -0.217 1.217 24 C -0.046 4.046 25 C -0.052 4.052 26 C -0.179 4.179 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.243 0.757 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.872 5.894 -5.705 25.243 hybrid contribution 0.813 0.881 -0.869 1.481 sum -23.060 6.776 -6.574 24.918 Atomic orbital electron populations 1.21894 0.90644 1.05324 1.05205 1.21029 0.90928 0.83118 0.75202 1.90748 1.70505 1.31246 1.47758 1.43642 1.05222 1.10010 1.72681 1.17414 0.82713 0.97619 0.98953 1.21304 0.94957 0.98276 0.96947 1.20979 0.93227 0.98860 1.00184 1.21415 1.00458 0.93452 0.95718 1.19581 0.92943 0.97496 1.02168 1.18147 0.82049 0.84495 0.80452 1.90653 1.70633 1.39575 1.41213 1.45443 1.05938 1.30710 1.51747 1.22454 0.92028 0.89976 0.96177 1.22709 0.90356 0.98778 0.89478 1.46240 1.34258 1.41935 1.13300 1.20151 1.04500 1.27416 0.91039 0.90012 1.25667 1.02470 1.02657 0.91287 1.70920 1.18684 1.32963 1.35038 0.83658 0.74463 0.76164 0.75048 1.22403 1.22143 1.21696 1.23327 0.89310 0.94144 0.97860 1.19709 0.92101 0.96899 0.96523 1.21082 0.99221 0.95764 1.01866 0.88355 0.88442 0.89878 0.75101 0.84411 0.84903 0.85029 0.75669 0.87644 0.93116 0.92990 0.92900 0.92911 0.92646 0.90699 0.93144 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.31 36.01 0.37 -0.35 16 2 C 0.51 4.57 7.69 -10.98 -0.08 4.48 16 3 O -0.53 -6.98 14.67 5.55 0.08 -6.90 16 4 N -0.67 -5.79 4.82 -9.89 -0.05 -5.84 16 5 C 0.13 1.51 6.29 -83.74 -0.53 0.98 16 6 C -0.09 -1.17 8.66 -39.31 -0.34 -1.51 16 7 C -0.11 -1.37 10.02 -39.67 -0.40 -1.77 16 8 C -0.09 -1.20 9.54 -39.16 -0.37 -1.57 16 9 C -0.12 -1.70 5.87 -104.99 -0.62 -2.32 16 10 C 0.56 9.17 7.75 -12.33 -0.10 9.07 16 11 O -0.54 -9.57 12.84 5.32 0.07 -9.50 16 12 N -0.69 -11.56 5.35 -54.43 -0.29 -11.86 16 13 C 0.10 1.77 4.61 -67.68 -0.31 1.46 16 14 C 0.11 2.12 8.44 -8.52 -0.07 2.05 16 15 N -0.63 -14.89 3.69 -184.65 -0.68 -15.57 16 16 C -0.30 -8.54 11.09 -15.06 -0.17 -8.71 16 17 H 0.08 2.41 8.05 -52.48 -0.42 1.99 16 18 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 19 N -0.93 -29.15 13.70 55.49 0.76 -28.39 16 20 Si 1.07 27.08 25.05 -169.99 -4.26 22.83 16 21 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 22 H -0.29 -7.07 6.52 56.52 0.37 -6.70 16 23 H -0.29 -6.91 6.52 56.52 0.37 -6.55 16 24 C 0.08 1.69 5.74 -8.39 -0.05 1.64 16 25 C -0.05 -0.63 5.93 -104.02 -0.62 -1.25 16 26 C -0.12 -1.40 8.43 36.00 0.30 -1.09 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.41 2.31 7.52 -40.82 -0.31 2.01 16 31 H 0.14 1.70 6.27 -52.49 -0.33 1.37 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.13 1.62 6.40 -52.49 -0.34 1.29 16 34 H 0.41 6.65 6.79 -40.82 -0.28 6.38 16 35 H 0.11 1.72 7.45 -51.93 -0.39 1.33 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 39 H 0.05 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.06 1.26 4.01 -51.93 -0.21 1.05 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.43 6.71 -51.92 -0.35 0.08 16 43 H 0.11 1.46 5.71 -51.93 -0.30 1.16 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -35.55 348.74 -7.69 -43.24 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.51 Total: 6.35 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -3.07 Total: 0.37 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.26 Total: -61.65 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.15 Total: -16.40 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: -4.26 Total: 22.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.55 -7.69 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031255600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.698 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds