Wall clock time and date at job start Tue Mar 31 2020 11:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21291 * 120.00113 * 2 1 4 4 N 1.34780 * 120.00045 * 180.02562 * 2 1 3 5 5 C 1.39954 * 119.99995 * 185.27099 * 4 2 1 6 6 C 1.38991 * 120.00065 * 34.52116 * 5 4 2 7 7 C 1.38210 * 120.22040 * 179.97438 * 6 5 4 8 8 C 1.38019 * 120.22597 * 359.76493 * 7 6 5 9 9 C 1.50696 * 120.00593 * 180.27397 * 8 7 6 10 10 C 1.39580 * 119.99329 * 0.49119 * 8 7 6 11 11 C 1.47863 * 120.11265 * 179.76040 * 10 8 7 12 12 O 1.21552 * 119.99677 * 353.53940 * 11 10 8 13 13 N 1.34772 * 120.00242 * 173.53568 * 11 10 8 14 14 C 1.46498 * 120.00304 * 180.02562 * 13 11 10 15 15 C 1.53953 * 113.74251 * 253.74508 * 14 13 11 16 16 N 1.47815 * 86.03455 * 222.08118 * 15 14 13 17 17 C 1.36935 * 134.45391 * 204.64464 * 16 15 14 18 18 H 1.08006 * 119.99772 * 179.87033 * 17 16 15 19 19 C 1.38808 * 120.00282 * 359.86563 * 17 16 15 20 20 N 1.31624 * 119.99848 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00293 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47642 * 89.99478 * 21 19 17 23 23 H 1.48502 * 109.46996 * 210.00202 * 21 19 17 24 24 H 1.48503 * 109.46918 * 329.99803 * 21 19 17 25 25 C 1.47580 * 91.05248 * 24.54982 * 16 15 14 26 26 C 1.38597 * 119.99857 * 214.49986 * 5 4 2 27 27 H 1.08990 * 109.47708 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47125 * 300.00249 * 1 2 3 29 29 H 1.09009 * 109.47036 * 59.99331 * 1 2 3 30 30 H 0.97001 * 119.99717 * 5.26390 * 4 2 1 31 31 H 1.07997 * 119.89161 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.88679 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47548 * 263.37174 * 9 8 7 34 34 H 1.08998 * 109.47379 * 23.37319 * 9 8 7 35 35 H 1.09000 * 109.47402 * 143.37516 * 9 8 7 36 36 H 0.97002 * 119.99581 * 0.02562 * 13 11 10 37 37 H 1.09004 * 112.94143 * 25.33500 * 14 13 11 38 38 H 1.08995 * 113.76438 * 336.34626 * 15 14 13 39 39 H 1.09001 * 113.77081 * 107.74541 * 15 14 13 40 40 H 0.96997 * 119.99545 * 180.02562 * 20 19 17 41 41 H 1.09000 * 113.77015 * 221.15371 * 25 16 15 42 42 H 1.09005 * 113.77199 * 89.75061 * 25 16 15 43 43 H 1.08004 * 120.11042 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5760 -1.1698 0.1108 6 6 4.2126 -0.2121 0.8914 7 6 5.5900 -0.2107 1.0049 8 6 6.3423 -1.1633 0.3480 9 6 7.8434 -1.1610 0.4802 10 6 5.7128 -2.1262 -0.4426 11 6 6.5165 -3.1447 -1.1518 12 8 7.7300 -3.0753 -1.1433 13 7 5.9037 -4.1500 -1.8077 14 6 6.6999 -5.1594 -2.5099 15 6 6.6712 -5.0156 -4.0424 16 7 6.5431 -6.4878 -4.0755 17 6 6.8439 -7.4562 -4.9957 18 1 6.6493 -8.4944 -4.7704 19 6 7.3989 -7.1036 -6.2182 20 7 7.6365 -5.8383 -6.4927 21 14 7.8087 -8.4245 -7.4738 22 1 6.6344 -8.6525 -8.3537 23 1 8.9650 -7.9848 -8.2954 24 1 8.1525 -9.6864 -6.7705 25 6 5.9634 -6.4951 -2.7183 26 6 4.3226 -2.1277 -0.5569 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.6989 -2.0054 -0.0780 31 1 3.6290 0.5330 1.4115 32 1 6.0792 0.5357 1.6132 33 1 8.2824 -0.6398 -0.3705 34 1 8.1262 -0.6535 1.4025 35 1 8.2077 -2.1881 0.5043 36 1 4.9352 -4.2051 -1.8147 37 1 7.7031 -5.2710 -2.0983 38 1 5.7934 -4.4897 -4.4178 39 1 7.6044 -4.6450 -4.4665 40 1 8.0239 -5.5919 -7.3471 41 1 6.3325 -7.3035 -2.0872 42 1 4.8772 -6.4046 -2.7040 43 1 3.8297 -2.8727 -1.1639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031490938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:50 Heat of formation + Delta-G solvation = -9.476198 kcal Electronic energy + Delta-G solvation = -25695.747261 eV Core-core repulsion = 21934.876279 eV Total energy + Delta-G solvation = -3760.870982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.81536 -40.99688 -39.73303 -38.71158 -36.09117 -35.28999 -33.94368 -32.75945 -32.12498 -30.46760 -29.38910 -27.31341 -26.62298 -25.56326 -24.48306 -22.78678 -22.37165 -21.38702 -20.95656 -19.05966 -18.78287 -18.26260 -17.47781 -17.04210 -16.90745 -16.73922 -16.40683 -16.11321 -15.71960 -15.58738 -15.34442 -14.79516 -14.68148 -14.58772 -14.22618 -13.70265 -13.48170 -13.36514 -13.30956 -13.21517 -13.07516 -12.97852 -12.80498 -12.75538 -12.63282 -12.40436 -12.27382 -11.93880 -11.52301 -11.32992 -11.08598 -10.89256 -10.61182 -10.11031 -9.88700 -9.08680 -8.97905 -7.92256 -5.27786 -0.18793 0.19312 1.45486 1.48161 1.50440 1.56947 1.90020 2.03323 2.16304 2.49662 2.79332 3.24900 3.38264 3.64933 3.72684 3.84088 3.87319 3.96812 4.15266 4.28701 4.36124 4.40701 4.50632 4.56219 4.68050 4.70955 4.74205 4.84673 4.86526 4.90988 5.02357 5.11983 5.12795 5.15378 5.23014 5.34034 5.39488 5.47983 5.60558 5.70531 5.88702 5.89707 6.43115 6.57914 6.87415 7.12288 7.24449 7.57880 8.50428 9.24436 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.002749 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.375397 B =10182.485993 C =11280.961637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.505 3.495 3 O -0.578 6.578 4 N -0.661 5.661 5 C 0.125 3.875 6 C -0.097 4.097 7 C -0.110 4.110 8 C -0.050 4.050 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.553 3.447 12 O -0.566 6.566 13 N -0.697 5.697 14 C 0.122 3.878 15 C 0.151 3.849 16 N -0.638 5.638 17 C -0.234 4.234 18 H 0.092 0.908 19 C -0.071 4.071 20 N -0.956 5.956 21 Si 0.983 3.017 22 H -0.284 1.284 23 H -0.298 1.298 24 H -0.265 1.265 25 C 0.124 3.876 26 C -0.100 4.100 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.431 0.569 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.031 0.969 40 H 0.248 0.752 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 9.839 19.105 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.296 3.704 3 O -0.457 6.457 4 N -0.309 5.309 5 C 0.031 3.969 6 C -0.118 4.118 7 C -0.128 4.128 8 C -0.052 4.052 9 C -0.171 4.171 10 C -0.134 4.134 11 C 0.342 3.658 12 O -0.447 6.447 13 N -0.349 5.349 14 C 0.015 3.985 15 C 0.025 3.975 16 N -0.366 5.366 17 C -0.362 4.362 18 H 0.110 0.890 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.811 3.189 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.189 1.189 25 C -0.002 4.002 26 C -0.120 4.120 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.271 0.729 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.053 10.455 18.833 26.278 hybrid contribution -0.088 -0.794 -1.331 1.552 sum -15.140 9.661 17.502 25.077 Atomic orbital electron populations 1.21902 0.86823 1.06976 1.06331 1.21907 0.92656 0.82342 0.73515 1.90745 1.71802 1.32984 1.50172 1.43679 1.03966 1.10985 1.72259 1.17621 0.84295 0.97534 0.97451 1.21391 0.94983 0.98392 0.97011 1.21117 0.93032 0.98429 1.00251 1.20193 0.97241 0.93149 0.94570 1.20968 0.90221 1.03880 1.02024 1.19543 0.93483 0.98135 1.02285 1.18634 0.87364 0.81420 0.78363 1.90726 1.15423 1.76170 1.62376 1.45780 1.10766 1.26261 1.52104 1.23201 0.95996 0.87890 0.91381 1.22598 0.98070 0.85060 0.91817 1.46043 1.72095 1.02975 1.15444 1.19437 1.34044 0.88261 0.94446 0.89046 1.25727 1.02058 0.98524 1.00033 1.70048 1.50035 1.16837 1.23502 0.85014 0.76982 0.78347 0.78594 1.21062 1.22430 1.18912 1.23017 0.97253 0.94499 0.85393 1.21158 0.91838 1.00335 0.98717 0.87109 0.87329 0.87900 0.72932 0.84725 0.82935 0.91946 0.90071 0.90777 0.74999 0.88772 0.95712 0.95004 0.94333 0.91538 0.91397 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 10.39 71.23 0.74 -0.02 16 2 C 0.50 7.44 7.67 87.65 0.67 8.12 16 3 O -0.58 -14.38 14.86 -3.06 -0.05 -14.43 16 4 N -0.66 -8.10 5.34 -303.60 -1.62 -9.72 16 5 C 0.13 2.36 6.25 38.11 0.24 2.60 16 6 C -0.10 -2.04 8.65 22.44 0.19 -1.84 16 7 C -0.11 -2.29 9.65 22.21 0.21 -2.08 16 8 C -0.05 -1.25 5.91 -19.59 -0.12 -1.37 16 9 C -0.11 -2.92 8.71 71.23 0.62 -2.30 16 10 C -0.13 -3.40 5.87 -20.10 -0.12 -3.52 16 11 C 0.55 17.83 7.70 86.79 0.67 18.50 16 12 O -0.57 -22.49 12.97 -3.88 -0.05 -22.54 16 13 N -0.70 -20.70 5.32 -450.23 -2.40 -23.09 16 14 C 0.12 4.65 4.40 46.75 0.21 4.86 16 15 C 0.15 7.42 7.33 86.44 0.63 8.05 16 16 N -0.64 -32.49 3.70 -716.63 -2.65 -35.15 16 17 C -0.23 -13.04 10.70 84.03 0.90 -12.14 16 18 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 20 N -0.96 -59.18 11.39 21.65 0.25 -58.93 16 21 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 C 0.12 4.59 8.69 86.49 0.75 5.34 16 26 C -0.10 -1.96 9.44 22.66 0.21 -1.75 16 27 H 0.11 -0.16 7.92 -2.39 -0.02 -0.18 16 28 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.43 1.88 8.66 -92.71 -0.80 1.08 16 31 H 0.13 2.84 6.49 -2.91 -0.02 2.82 16 32 H 0.15 2.42 8.05 -2.91 -0.02 2.39 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 35 H 0.07 2.24 5.87 -2.39 -0.01 2.23 16 36 H 0.41 9.11 6.78 -92.71 -0.63 8.48 16 37 H 0.09 4.01 7.51 -2.39 -0.02 3.99 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.03 1.83 7.16 -2.39 -0.02 1.82 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 2.13 8.11 -2.38 -0.02 2.11 16 43 H 0.15 2.16 6.45 -2.91 -0.02 2.14 16 Total: -1.00 -81.65 359.22 1.42 -80.23 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.37 Total: 16.82 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 6.28 Total: 18.85 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -6.42 Total: -126.89 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.10 Total: -36.97 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -81.65 1.42 -80.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031490938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.754 kcal (2) G-P(sol) polarization free energy of solvation -81.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds