Wall clock time and date at job start Tue Mar 31 2020 12:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38351 * 119.40825 * 2 1 4 4 C 1.38339 * 119.46051 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.82512 * 180.02562 * 4 3 2 6 6 C 1.39984 * 118.34914 * 359.97438 * 4 3 2 7 7 C 1.47523 * 120.59955 * 180.02562 * 6 4 3 8 8 O 1.21585 * 119.99922 * 89.99305 * 7 6 4 9 9 N 1.34775 * 119.99847 * 269.99878 * 7 6 4 10 10 C 1.47873 * 126.94582 * 0.02562 * 9 7 6 11 11 C 1.56013 * 105.10706 * 181.73734 * 10 9 7 12 12 H 1.09000 * 116.25104 * 158.83275 * 11 10 9 13 13 C 1.57087 * 99.60543 * 32.80524 * 11 10 9 14 14 C 1.49286 * 126.94433 * 179.70540 * 9 7 6 15 15 H 1.08994 * 116.15541 * 16.10793 * 14 9 7 16 16 C 1.58971 * 103.44514 * 246.72515 * 14 9 7 17 17 N 1.47871 * 104.76435 * 288.41316 * 16 14 9 18 18 C 1.36936 * 126.94319 * 182.38025 * 17 16 14 19 19 H 1.08000 * 119.99651 * 173.68061 * 18 17 16 20 20 C 1.38815 * 120.00316 * 353.67168 * 18 17 16 21 21 N 1.31624 * 119.99542 * 6.43375 * 20 18 17 22 22 Si 1.86793 * 120.00276 * 186.43171 * 20 18 17 23 23 H 1.48505 * 109.46982 * 94.98811 * 22 20 18 24 24 H 1.48495 * 109.47533 * 214.98486 * 22 20 18 25 25 H 1.48503 * 109.47377 * 334.99279 * 22 20 18 26 26 C 1.40286 * 118.80618 * 0.27237 * 6 4 3 27 27 O 1.35424 * 119.80188 * 179.70429 * 26 6 4 28 28 N 1.31881 * 119.40698 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47235 * 90.00363 * 1 2 3 30 30 H 1.09004 * 109.47083 * 210.00009 * 1 2 3 31 31 H 1.09005 * 109.47083 * 329.99839 * 1 2 3 32 32 H 1.08004 * 120.26920 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47231 * 269.97951 * 5 4 3 34 34 H 1.09005 * 109.47344 * 29.97360 * 5 4 3 35 35 H 1.08999 * 109.46954 * 149.97637 * 5 4 3 36 36 H 1.09006 * 110.31542 * 300.64913 * 10 9 7 37 37 H 1.09000 * 110.31439 * 62.82875 * 10 9 7 38 38 H 1.08999 * 112.36960 * 64.27685 * 13 11 10 39 39 H 1.08999 * 112.36612 * 191.71700 * 13 11 10 40 40 H 1.08993 * 110.16230 * 169.77463 * 16 14 9 41 41 H 1.09004 * 110.88070 * 47.40990 * 16 14 9 42 42 H 0.96995 * 119.99504 * 179.97438 * 21 20 18 43 43 H 0.96700 * 113.99858 * 90.00462 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3407 2.5013 0.0000 6 6 4.2355 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0005 8 8 6.3171 -0.1046 1.0525 9 7 6.3830 -0.1073 -1.1677 10 6 5.8044 -0.0846 -2.5283 11 6 7.0277 -0.1776 -3.4921 12 1 6.8198 -0.5293 -4.5026 13 6 7.9806 -1.0720 -2.6205 14 6 7.8641 -0.1580 -1.3482 15 1 8.4452 -0.4471 -0.4726 16 6 8.2050 1.2498 -2.0031 17 7 7.6794 1.1611 -3.3824 18 6 7.7718 2.1142 -4.3613 19 1 7.4368 1.8927 -5.3638 20 6 8.2960 3.3649 -4.0650 21 7 8.8200 3.5949 -2.8797 22 14 8.2576 4.7216 -5.3484 23 1 7.0552 5.5675 -5.1387 24 1 9.4786 5.5572 -5.2222 25 1 8.2082 4.1189 -6.7047 26 6 3.4758 -1.2041 -0.0058 27 8 4.0991 -2.4064 -0.0119 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6410 2.1375 0.0004 33 1 4.5265 2.8140 -1.0275 34 1 3.7620 3.2687 0.5142 35 1 5.2913 2.3579 0.5138 36 1 5.1431 -0.9391 -2.6726 37 1 5.2623 0.8465 -2.6935 38 1 7.5748 -2.0698 -2.4532 39 1 8.9957 -1.1046 -3.0163 40 1 9.2837 1.4057 -2.0185 41 1 7.7140 2.0590 -1.4624 42 1 9.1866 4.4687 -2.6728 43 1 4.2806 -2.7598 0.8697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032549533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:00 Heat of formation + Delta-G solvation = 18.308306 kcal Electronic energy + Delta-G solvation = -27668.547938 eV Core-core repulsion = 23908.881782 eV Total energy + Delta-G solvation = -3759.666156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95038 -39.68704 -37.71298 -37.36268 -34.20204 -33.61103 -31.92968 -31.42640 -29.20480 -28.56810 -28.09617 -27.49303 -25.23161 -23.94004 -23.06789 -21.78788 -20.60778 -19.85207 -18.68607 -18.46112 -17.58204 -17.19197 -16.44179 -15.97095 -15.59837 -15.13190 -14.45845 -14.39155 -14.17739 -13.91003 -13.45261 -13.32960 -13.12026 -13.04564 -12.76673 -12.48673 -12.21552 -12.04676 -11.97071 -11.85544 -11.65976 -11.64320 -11.39886 -11.03850 -10.91466 -10.79938 -10.62964 -10.27331 -10.12029 -10.01902 -9.67713 -9.54784 -9.30602 -8.83079 -8.73317 -8.03281 -6.96179 -5.82564 -3.15957 0.76055 1.06897 2.85335 3.23612 3.32074 3.33715 3.39313 3.41622 3.68099 4.38207 4.38588 4.50689 4.68833 4.93431 5.05531 5.15920 5.18110 5.24201 5.31722 5.33938 5.38053 5.52552 5.55656 5.58790 5.66973 5.70773 5.73838 5.85422 5.97469 6.09800 6.13573 6.20052 6.27979 6.38521 6.42270 6.48224 6.56813 6.66163 7.35520 7.37379 7.46004 7.67294 7.78380 8.00667 8.05676 8.45946 9.05860 9.66485 10.36754 11.29951 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.004517 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.452838 B = 6196.929450 C = 6994.136002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.161 3.839 3 C -0.187 4.187 4 C 0.016 3.984 5 C -0.125 4.125 6 C -0.186 4.186 7 C 0.588 3.412 8 O -0.551 6.551 9 N -0.590 5.590 10 C 0.087 3.913 11 C 0.142 3.858 12 H 0.105 0.895 13 C -0.150 4.150 14 C 0.094 3.906 15 H 0.115 0.885 16 C 0.178 3.822 17 N -0.597 5.597 18 C -0.231 4.231 19 H 0.081 0.919 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.350 3.650 27 O -0.475 6.475 28 N -0.509 5.509 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.752 -7.149 5.354 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.023 3.977 3 C -0.207 4.207 4 C 0.008 3.992 5 C -0.182 4.182 6 C -0.193 4.193 7 C 0.375 3.625 8 O -0.431 6.431 9 N -0.321 5.321 10 C -0.039 4.039 11 C 0.033 3.967 12 H 0.123 0.877 13 C -0.190 4.190 14 C -0.009 4.009 15 H 0.133 0.867 16 C 0.052 3.948 17 N -0.321 5.321 18 C -0.359 4.359 19 H 0.098 0.902 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.170 3.830 27 O -0.282 6.282 28 N -0.229 5.229 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -12.798 -7.627 5.332 15.824 hybrid contribution 0.442 1.430 -0.168 1.506 sum -12.356 -6.197 5.165 14.756 Atomic orbital electron populations 1.20765 0.88311 1.03632 1.03427 1.21098 0.96810 0.87112 0.92671 1.21770 0.93653 0.99544 1.05697 1.20343 0.93602 0.94482 0.90789 1.20958 1.00289 0.92610 1.04311 1.20927 0.95299 0.93953 1.09095 1.17283 0.85533 0.76645 0.83056 1.90773 1.69340 1.52328 1.30610 1.49123 1.08283 1.69521 1.05201 1.23291 0.98070 1.00363 0.82142 1.23150 0.90159 0.87581 0.95763 0.87686 1.24127 1.01203 0.97063 0.96594 1.24985 0.79435 0.99445 0.96994 0.86678 1.22480 0.98309 0.89736 0.84226 1.45212 1.64138 1.12725 1.10044 1.19058 1.36544 0.90570 0.89754 0.90156 1.24818 1.00700 0.97543 0.96982 1.69917 1.43651 1.22295 1.20549 0.86130 0.77164 0.82158 0.80489 1.21649 1.21743 1.20566 1.18950 0.86302 0.84352 0.93380 1.84695 1.76757 1.32684 1.34086 1.66999 1.09117 1.30411 1.16378 0.90010 0.90312 0.90342 0.83937 0.89068 0.90434 0.90310 0.92861 0.91268 0.91370 0.89688 0.93004 0.93002 0.93565 0.73843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.16 36.00 0.37 -0.48 16 2 C 0.16 1.96 6.78 -82.53 -0.56 1.40 16 3 C -0.19 -2.25 9.41 -39.50 -0.37 -2.62 16 4 C 0.02 0.23 5.95 -103.93 -0.62 -0.38 16 5 C -0.13 -1.83 9.69 36.00 0.35 -1.48 16 6 C -0.19 -3.10 4.93 -104.69 -0.52 -3.61 16 7 C 0.59 11.22 5.50 -12.48 -0.07 11.15 16 8 O -0.55 -11.88 17.45 5.29 0.09 -11.79 16 9 N -0.59 -11.18 2.94 -156.15 -0.46 -11.64 16 10 C 0.09 1.58 5.97 -1.68 -0.01 1.57 16 11 C 0.14 2.68 5.47 -62.55 -0.34 2.34 16 12 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 13 C -0.15 -2.57 6.84 -22.30 -0.15 -2.73 16 14 C 0.09 1.81 5.36 -60.84 -0.33 1.48 16 15 H 0.12 2.15 8.05 -51.93 -0.42 1.73 16 16 C 0.18 4.17 4.91 0.03 0.00 4.17 16 17 N -0.60 -14.10 3.02 -154.40 -0.47 -14.56 16 18 C -0.23 -6.03 10.36 -15.06 -0.16 -6.19 16 19 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -26.00 10.61 55.49 0.59 -25.41 16 22 Si 0.91 21.26 29.56 -169.99 -5.02 16.24 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.35 5.45 7.77 -16.61 -0.13 5.32 16 27 O -0.47 -6.82 13.01 -17.96 -0.23 -7.05 16 28 N -0.51 -7.43 10.28 -9.21 -0.09 -7.52 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 35 H 0.08 1.34 7.19 -51.93 -0.37 0.97 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.05 1.34 7.64 -51.93 -0.40 0.94 16 41 H 0.05 1.38 7.53 -51.93 -0.39 0.99 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.40 4.05 9.06 45.56 0.41 4.47 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -32.66 357.75 -8.20 -40.86 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.36 Total: 5.75 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: -2.63 Total: 9.74 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.43 Total: -59.13 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.14 Total: -18.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.66 -8.20 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032549533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.168 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds