Wall clock time and date at job start Tue Mar 31 2020 12:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38351 * 119.40825 * 2 1 4 4 C 1.38339 * 119.46051 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.82512 * 180.02562 * 4 3 2 6 6 C 1.39984 * 118.34914 * 359.97438 * 4 3 2 7 7 C 1.47523 * 120.59955 * 180.02562 * 6 4 3 8 8 O 1.21585 * 119.99922 * 89.99305 * 7 6 4 9 9 N 1.34775 * 119.99847 * 269.99878 * 7 6 4 10 10 C 1.47873 * 126.94582 * 0.02562 * 9 7 6 11 11 C 1.56013 * 105.10706 * 181.73734 * 10 9 7 12 12 H 1.09000 * 116.25104 * 158.83275 * 11 10 9 13 13 C 1.57087 * 99.60543 * 32.80524 * 11 10 9 14 14 C 1.49286 * 126.94433 * 179.70540 * 9 7 6 15 15 H 1.08994 * 116.15541 * 16.10793 * 14 9 7 16 16 C 1.58971 * 103.44514 * 246.72515 * 14 9 7 17 17 N 1.47871 * 104.76435 * 288.41316 * 16 14 9 18 18 C 1.36936 * 126.94319 * 182.38025 * 17 16 14 19 19 H 1.08000 * 119.99651 * 173.68061 * 18 17 16 20 20 C 1.38815 * 120.00316 * 353.67168 * 18 17 16 21 21 N 1.31624 * 119.99542 * 6.43375 * 20 18 17 22 22 Si 1.86793 * 120.00276 * 186.43171 * 20 18 17 23 23 H 1.48505 * 109.46982 * 94.98811 * 22 20 18 24 24 H 1.48495 * 109.47533 * 214.98486 * 22 20 18 25 25 H 1.48503 * 109.47377 * 334.99279 * 22 20 18 26 26 C 1.40286 * 118.80618 * 0.27237 * 6 4 3 27 27 O 1.35424 * 119.80188 * 179.70429 * 26 6 4 28 28 N 1.31881 * 119.40698 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47235 * 90.00363 * 1 2 3 30 30 H 1.09004 * 109.47083 * 210.00009 * 1 2 3 31 31 H 1.09005 * 109.47083 * 329.99839 * 1 2 3 32 32 H 1.08004 * 120.26920 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47231 * 269.97951 * 5 4 3 34 34 H 1.09005 * 109.47344 * 29.97360 * 5 4 3 35 35 H 1.08999 * 109.46954 * 149.97637 * 5 4 3 36 36 H 1.09006 * 110.31542 * 300.64913 * 10 9 7 37 37 H 1.09000 * 110.31439 * 62.82875 * 10 9 7 38 38 H 1.08999 * 112.36960 * 64.27685 * 13 11 10 39 39 H 1.08999 * 112.36612 * 191.71700 * 13 11 10 40 40 H 1.08993 * 110.16230 * 169.77463 * 16 14 9 41 41 H 1.09004 * 110.88070 * 47.40990 * 16 14 9 42 42 H 0.96995 * 119.99504 * 179.97438 * 21 20 18 43 43 H 0.96700 * 113.99858 * 90.00462 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3407 2.5013 0.0000 6 6 4.2355 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0005 8 8 6.3171 -0.1046 1.0525 9 7 6.3830 -0.1073 -1.1677 10 6 5.8044 -0.0846 -2.5283 11 6 7.0277 -0.1776 -3.4921 12 1 6.8198 -0.5293 -4.5026 13 6 7.9806 -1.0720 -2.6205 14 6 7.8641 -0.1580 -1.3482 15 1 8.4452 -0.4471 -0.4726 16 6 8.2050 1.2498 -2.0031 17 7 7.6794 1.1611 -3.3824 18 6 7.7718 2.1142 -4.3613 19 1 7.4368 1.8927 -5.3638 20 6 8.2960 3.3649 -4.0650 21 7 8.8200 3.5949 -2.8797 22 14 8.2576 4.7216 -5.3484 23 1 7.0552 5.5675 -5.1387 24 1 9.4786 5.5572 -5.2222 25 1 8.2082 4.1189 -6.7047 26 6 3.4758 -1.2041 -0.0058 27 8 4.0991 -2.4064 -0.0119 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6410 2.1375 0.0004 33 1 4.5265 2.8140 -1.0275 34 1 3.7620 3.2687 0.5142 35 1 5.2913 2.3579 0.5138 36 1 5.1431 -0.9391 -2.6726 37 1 5.2623 0.8465 -2.6935 38 1 7.5748 -2.0698 -2.4532 39 1 8.9957 -1.1046 -3.0163 40 1 9.2837 1.4057 -2.0185 41 1 7.7140 2.0590 -1.4624 42 1 9.1866 4.4687 -2.6728 43 1 4.2806 -2.7598 0.8697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032549533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:59 Heat of formation + Delta-G solvation = -5.879067 kcal Electronic energy + Delta-G solvation = -27669.596781 eV Core-core repulsion = 23908.881782 eV Total energy + Delta-G solvation = -3760.714999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17454 -41.13258 -39.24376 -38.43508 -35.54389 -35.24438 -33.35572 -32.71843 -30.83288 -30.25486 -29.32971 -28.45887 -27.02736 -25.45807 -24.37307 -23.05779 -21.97065 -21.45465 -20.26549 -19.52895 -19.17464 -18.34542 -18.13342 -17.53325 -16.81029 -16.68927 -16.04233 -15.79211 -15.46466 -15.14502 -14.91451 -14.71093 -14.32272 -14.08151 -13.97986 -13.86605 -13.60490 -13.40595 -13.29030 -13.19489 -12.99363 -12.86542 -12.84533 -12.74522 -12.64848 -12.38878 -12.19162 -12.04714 -11.91254 -11.56415 -11.40486 -10.76838 -10.66868 -10.50182 -9.87486 -9.63874 -8.92129 -7.86302 -5.21239 -0.31191 -0.01493 1.37959 1.47449 1.47809 1.57073 1.86001 2.27328 2.47496 2.59295 3.21771 3.31467 3.40649 3.49412 3.53554 3.71863 3.82218 3.88232 3.97297 4.12829 4.14201 4.22711 4.43724 4.48244 4.49580 4.57073 4.59435 4.77933 4.82860 4.85462 4.90493 4.96910 5.00050 5.06495 5.09388 5.14123 5.18071 5.41165 5.48566 5.51904 5.64293 6.08156 6.40171 6.49533 6.75869 6.95364 7.02288 7.69049 8.40595 9.25279 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.004517 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.452838 B = 6196.929450 C = 6994.136002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.163 3.837 3 C -0.176 4.176 4 C 0.002 3.998 5 C -0.117 4.117 6 C -0.214 4.214 7 C 0.590 3.410 8 O -0.585 6.585 9 N -0.593 5.593 10 C 0.099 3.901 11 C 0.138 3.862 12 H 0.132 0.868 13 C -0.128 4.128 14 C 0.098 3.902 15 H 0.120 0.880 16 C 0.190 3.810 17 N -0.614 5.614 18 C -0.233 4.233 19 H 0.093 0.907 20 C -0.063 4.063 21 N -0.952 5.952 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.301 1.301 25 H -0.263 1.263 26 C 0.347 3.653 27 O -0.484 6.484 28 N -0.521 5.521 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.181 0.819 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.018 0.982 41 H 0.007 0.993 42 H 0.245 0.755 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.678 -8.242 4.308 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.026 3.974 3 C -0.195 4.195 4 C -0.005 4.005 5 C -0.173 4.173 6 C -0.220 4.220 7 C 0.378 3.622 8 O -0.467 6.467 9 N -0.324 5.324 10 C -0.026 4.026 11 C 0.031 3.969 12 H 0.150 0.850 13 C -0.167 4.167 14 C -0.005 4.005 15 H 0.137 0.863 16 C 0.064 3.936 17 N -0.338 5.338 18 C -0.361 4.361 19 H 0.111 0.889 20 C -0.256 4.256 21 N -0.601 5.601 22 Si 0.802 3.198 23 H -0.218 1.218 24 H -0.228 1.228 25 H -0.188 1.188 26 C 0.167 3.833 27 O -0.294 6.294 28 N -0.242 5.242 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.198 0.802 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.036 0.964 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -15.754 -8.772 4.265 18.529 hybrid contribution 1.264 1.740 0.190 2.159 sum -14.489 -7.032 4.455 16.710 Atomic orbital electron populations 1.20926 0.84986 1.05234 1.04731 1.21890 0.98824 0.86422 0.90289 1.22136 0.92279 1.01258 1.03816 1.20473 0.95006 0.93523 0.91543 1.20854 0.99348 0.94042 1.03095 1.20810 0.93538 0.95442 1.12223 1.17703 0.86762 0.75344 0.82350 1.90734 1.70497 1.53717 1.31709 1.49182 1.07965 1.69467 1.05749 1.23109 0.97735 1.00281 0.81442 1.23509 0.90280 0.85516 0.97580 0.85028 1.24036 1.01166 0.97544 0.93973 1.24859 0.80171 0.97370 0.98112 0.86258 1.22081 0.95655 0.91127 0.84695 1.45419 1.64537 1.14375 1.09454 1.19499 1.34853 0.91066 0.90711 0.88938 1.25604 1.01343 0.99877 0.98773 1.70143 1.45328 1.22051 1.22597 0.85127 0.76308 0.79296 0.79035 1.21775 1.22791 1.18779 1.18978 0.86726 0.84191 0.93362 1.84632 1.76835 1.32320 1.35616 1.67150 1.08370 1.31625 1.17044 0.88589 0.90060 0.87468 0.80211 0.90861 0.87090 0.93781 0.90542 0.93270 0.88298 0.89378 0.96424 0.97478 0.94578 0.72052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.16 71.23 0.72 -0.49 16 2 C 0.16 3.47 6.78 42.58 0.29 3.76 16 3 C -0.18 -3.72 9.41 22.32 0.21 -3.51 16 4 C 0.00 0.07 5.95 -19.42 -0.12 -0.05 16 5 C -0.12 -3.49 9.69 71.24 0.69 -2.80 16 6 C -0.21 -7.07 4.93 -19.91 -0.10 -7.16 16 7 C 0.59 23.02 5.50 86.69 0.48 23.50 16 8 O -0.58 -26.19 17.45 -3.98 -0.07 -26.26 16 9 N -0.59 -22.71 2.94 -766.20 -2.26 -24.97 16 10 C 0.10 3.52 5.97 87.16 0.52 4.04 16 11 C 0.14 5.00 5.47 46.93 0.26 5.25 16 12 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 13 C -0.13 -4.16 6.84 33.47 0.23 -3.93 16 14 C 0.10 3.84 5.36 48.04 0.26 4.10 16 15 H 0.12 4.58 8.05 -2.39 -0.02 4.56 16 16 C 0.19 9.41 4.91 88.27 0.43 9.84 16 17 N -0.61 -29.37 3.02 -642.39 -1.94 -31.31 16 18 C -0.23 -12.20 10.36 84.03 0.87 -11.33 16 19 H 0.09 4.53 7.84 -2.91 -0.02 4.50 16 20 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 21 N -0.95 -56.66 10.61 21.65 0.23 -56.43 16 22 Si 0.97 44.40 29.56 68.60 2.03 46.42 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 C 0.35 10.42 7.77 85.13 0.66 11.08 16 27 O -0.48 -13.36 13.01 -87.19 -1.13 -14.50 16 28 N -0.52 -14.09 10.28 -296.06 -3.04 -17.14 16 29 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.11 0.70 8.07 -2.38 -0.02 0.69 16 32 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.11 2.45 8.10 -2.38 -0.02 2.43 16 35 H 0.04 1.60 7.19 -2.39 -0.02 1.58 16 36 H 0.08 2.40 8.14 -2.38 -0.02 2.39 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.02 0.97 7.64 -2.39 -0.02 0.96 16 41 H 0.01 0.41 7.53 -2.38 -0.02 0.39 16 42 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.42 8.10 9.06 -74.06 -0.67 7.43 16 Total: -1.00 -74.55 357.75 0.05 -74.50 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.37 Total: 20.38 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: 5.87 Total: 29.30 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -7.01 Total: -129.85 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.20 Total: -40.76 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -74.55 0.05 -74.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032549533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.622 kcal (2) G-P(sol) polarization free energy of solvation -74.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds