Wall clock time and date at job start Tue Mar 31 2020 11:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35682 * 117.00107 * 2 1 4 4 C 1.38897 * 119.62387 * 180.27370 * 3 2 1 5 5 C 1.39575 * 118.94236 * 180.23044 * 4 3 2 6 6 C 1.48168 * 120.88794 * 179.78319 * 5 4 3 7 7 O 1.21509 * 119.99994 * 4.95336 * 6 5 4 8 8 N 1.34776 * 119.99777 * 184.95212 * 6 5 4 9 9 C 1.49068 * 127.54539 * 355.60435 * 8 6 5 10 10 C 1.56017 * 105.20732 * 182.03470 * 9 8 6 11 11 H 1.09000 * 116.24926 * 158.17030 * 10 9 8 12 12 C 1.57079 * 99.60857 * 32.13450 * 10 9 8 13 13 C 1.49284 * 126.94512 * 174.41445 * 8 6 5 14 14 H 1.09005 * 116.15276 * 16.67762 * 13 8 6 15 15 C 1.56017 * 104.87051 * 246.87918 * 13 8 6 16 16 N 1.47868 * 105.10369 * 288.57891 * 15 13 8 17 17 C 1.36935 * 126.94828 * 181.99925 * 16 15 13 18 18 H 1.07998 * 120.00351 * 179.97438 * 17 16 15 19 19 C 1.38818 * 120.00032 * 0.02562 * 17 16 15 20 20 N 1.31621 * 119.99484 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00199 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47363 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47416 * 120.00114 * 21 19 17 24 24 H 1.48500 * 109.47197 * 239.99796 * 21 19 17 25 25 C 1.39970 * 118.21960 * 359.50682 * 5 4 3 26 26 C 1.37978 * 119.13056 * 0.25463 * 25 5 4 27 27 C 1.50698 * 119.50716 * 179.97438 * 26 25 5 28 28 N 1.31906 * 120.98014 * 359.97438 * 26 25 5 29 29 H 1.09008 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47505 * 299.99759 * 1 2 3 31 31 H 1.08996 * 109.47208 * 59.99864 * 1 2 3 32 32 H 1.08000 * 120.52896 * 0.02562 * 4 3 2 33 33 H 1.09003 * 110.82984 * 62.79861 * 9 8 6 34 34 H 1.09004 * 109.69709 * 300.68564 * 9 8 6 35 35 H 1.08993 * 112.37435 * 191.71763 * 12 10 9 36 36 H 1.09001 * 112.44529 * 64.29718 * 12 10 9 37 37 H 1.08999 * 110.31853 * 47.48612 * 15 13 8 38 38 H 1.08999 * 110.32012 * 169.67289 * 15 13 8 39 39 H 0.97001 * 119.99636 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.43320 * 180.27483 * 25 5 4 41 41 H 1.08994 * 109.47636 * 89.99631 * 27 26 25 42 42 H 1.09002 * 109.47212 * 210.00140 * 27 26 25 43 43 H 1.09003 * 109.47105 * 329.99250 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0058 5 6 4.0513 2.5235 -0.0008 6 6 5.5283 2.6415 -0.0018 7 8 6.2173 1.6453 -0.0979 8 7 6.1075 3.8539 0.1038 9 6 5.4332 5.1828 0.1390 10 6 6.5899 6.2268 0.2168 11 1 6.3498 7.2378 -0.1122 12 6 7.6879 5.4634 -0.6071 13 6 7.5662 4.1431 0.2351 14 1 8.2429 3.3313 -0.0321 15 6 7.7297 4.7335 1.6700 16 7 7.1202 6.0791 1.6046 17 6 7.0550 7.0031 2.6132 18 1 6.5807 7.9579 2.4411 19 6 7.5996 6.7128 3.8567 20 7 8.1781 5.5493 4.0663 21 14 7.5115 7.9734 5.2322 22 1 6.8162 9.1914 4.7438 23 1 6.7624 7.4021 6.3801 24 1 8.8863 8.3294 5.6664 25 6 3.2393 3.6636 -0.0007 26 6 1.8680 3.5115 -0.0002 27 6 0.9857 4.7332 0.0004 28 7 1.3178 2.3127 -0.0003 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0231 0.3683 -0.0107 33 1 4.7879 5.2670 1.0135 34 1 4.8551 5.3258 -0.7740 35 1 8.6711 5.9248 -0.5153 36 1 7.4011 5.3188 -1.6488 37 1 7.2033 4.1144 2.3963 38 1 8.7855 4.8086 1.9303 39 1 8.5584 5.3463 4.9353 40 1 3.6805 4.6494 -0.0014 41 1 0.7726 5.0281 -1.0270 42 1 0.0516 4.5066 0.5146 43 1 1.4946 5.5487 0.5144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032591080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:09 Heat of formation + Delta-G solvation = 22.894833 kcal Electronic energy + Delta-G solvation = -27017.833034 eV Core-core repulsion = 23258.365765 eV Total energy + Delta-G solvation = -3759.467269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21133 -41.30882 -39.57578 -38.86338 -35.57296 -34.29653 -33.55026 -32.60711 -30.69775 -30.34143 -29.22686 -27.65820 -27.01707 -26.16362 -24.45052 -23.90917 -21.95857 -21.44994 -20.43018 -19.45561 -18.71615 -18.37541 -17.46693 -17.16608 -17.14541 -16.63075 -16.50323 -16.27652 -15.70283 -15.24747 -15.08506 -15.04898 -14.75782 -14.60015 -13.90774 -13.60675 -13.43615 -13.34762 -13.18228 -13.12556 -13.01171 -12.82834 -12.75628 -12.65604 -12.23342 -12.14262 -12.05348 -11.95058 -11.80217 -11.52205 -11.41261 -11.00777 -10.85470 -10.62883 -9.68327 -9.52234 -8.89977 -7.83267 -5.18740 -0.45402 0.00837 1.49111 1.49584 1.56440 1.59695 1.76460 2.11225 2.50031 2.65696 3.07251 3.20733 3.35208 3.42161 3.71662 3.75993 3.85832 3.93057 3.99020 4.08170 4.22754 4.39424 4.42229 4.44339 4.48657 4.51316 4.60795 4.69568 4.75362 4.83976 4.84719 4.91697 4.98504 5.02645 5.07844 5.14288 5.23050 5.38311 5.46799 5.51071 5.67067 6.10479 6.11710 6.45486 6.67343 6.92056 7.03923 7.72673 8.42291 9.28354 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.003775 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.696737 B = 7415.514046 C = 7978.272288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.314 3.686 4 C -0.162 4.162 5 C -0.054 4.054 6 C 0.566 3.434 7 O -0.581 6.581 8 N -0.598 5.598 9 C 0.077 3.923 10 C 0.138 3.862 11 H 0.147 0.853 12 C -0.130 4.130 13 C 0.099 3.901 14 H 0.114 0.886 15 C 0.187 3.813 16 N -0.615 5.615 17 C -0.224 4.224 18 H 0.102 0.898 19 C -0.073 4.073 20 N -0.959 5.959 21 Si 0.974 3.026 22 H -0.254 1.254 23 H -0.303 1.303 24 H -0.300 1.300 25 C -0.200 4.200 26 C 0.164 3.836 27 C -0.102 4.102 28 N -0.531 5.531 29 H 0.124 0.876 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.104 0.896 37 H -0.004 1.004 38 H 0.022 0.978 39 H 0.242 0.758 40 H 0.186 0.814 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.425 -0.505 -13.156 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.136 3.864 4 C -0.184 4.184 5 C -0.064 4.064 6 C 0.356 3.644 7 O -0.462 6.462 8 N -0.329 5.329 9 C -0.046 4.046 10 C 0.031 3.969 11 H 0.164 0.836 12 C -0.169 4.169 13 C -0.004 4.004 14 H 0.132 0.868 15 C 0.060 3.940 16 N -0.339 5.339 17 C -0.353 4.353 18 H 0.119 0.881 19 C -0.265 4.265 20 N -0.608 5.608 21 Si 0.804 3.196 22 H -0.178 1.178 23 H -0.231 1.231 24 H -0.227 1.227 25 C -0.220 4.220 26 C 0.028 3.972 27 C -0.158 4.158 28 N -0.257 5.257 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.014 0.986 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.203 0.797 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.852 -1.388 -12.975 20.532 hybrid contribution 1.233 -0.210 1.596 2.028 sum -14.619 -1.598 -11.379 18.595 Atomic orbital electron populations 1.23124 0.75249 1.04874 1.02579 1.86243 1.24888 1.23755 1.87735 1.19594 0.88611 0.85386 0.92836 1.21037 0.92572 0.98727 1.06071 1.20026 0.92679 0.94314 0.99409 1.18058 0.87425 0.82060 0.76881 1.90712 1.65350 1.37062 1.53098 1.49399 1.08985 1.05690 1.68847 1.23979 0.97048 0.81548 1.02010 1.23677 0.91255 0.97943 0.83985 0.83576 1.24099 1.00718 0.93477 0.98579 1.24251 0.81298 0.97700 0.97167 0.86848 1.21516 0.95815 0.85684 0.90943 1.45501 1.66411 1.13549 1.08460 1.19608 1.30236 0.95916 0.89545 0.88080 1.25649 1.01476 0.98873 1.00491 1.70162 1.44678 1.23507 1.22474 0.85054 0.76581 0.78926 0.79056 1.17816 1.23102 1.22742 1.23380 0.94450 1.01156 1.03009 1.21586 0.92030 0.92619 0.91011 1.20904 0.98607 0.91303 1.05034 1.67084 1.41036 0.98703 1.18862 0.85822 0.92352 0.91865 0.84229 0.91072 0.86801 0.89762 0.87732 0.98613 0.96006 0.94870 0.79731 0.87794 0.89889 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.80 16 2 O -0.32 -8.34 10.47 -90.00 -0.94 -9.28 16 3 C 0.31 9.15 7.49 84.80 0.63 9.78 16 4 C -0.16 -5.26 9.61 22.75 0.22 -5.04 16 5 C -0.05 -1.76 5.91 -19.90 -0.12 -1.88 16 6 C 0.57 21.62 7.89 86.88 0.69 22.30 16 7 O -0.58 -25.99 16.80 -3.74 -0.06 -26.06 16 8 N -0.60 -21.06 3.01 -768.25 -2.31 -23.37 16 9 C 0.08 2.18 4.29 86.93 0.37 2.55 16 10 C 0.14 4.24 5.53 46.93 0.26 4.50 16 11 H 0.15 3.51 8.14 -2.39 -0.02 3.49 16 12 C -0.13 -3.75 6.80 33.46 0.23 -3.52 16 13 C 0.10 3.70 5.20 46.93 0.24 3.94 16 14 H 0.11 4.27 8.04 -2.38 -0.02 4.25 16 15 C 0.19 9.02 4.78 87.16 0.42 9.44 16 16 N -0.61 -27.74 3.02 -648.54 -1.96 -29.70 16 17 C -0.22 -11.25 10.38 84.04 0.87 -10.38 16 18 H 0.10 4.60 7.83 -2.91 -0.02 4.57 16 19 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 20 N -0.96 -57.45 10.56 21.65 0.23 -57.23 16 21 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 22 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 25 C -0.20 -5.18 8.53 22.63 0.19 -4.99 16 26 C 0.16 3.80 6.77 42.49 0.29 4.09 16 27 C -0.10 -1.44 10.16 71.24 0.72 -0.71 16 28 N -0.53 -13.91 9.09 -297.18 -2.70 -16.61 16 29 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 32 H 0.14 4.71 7.75 -2.91 -0.02 4.69 16 33 H 0.07 2.24 7.00 -2.39 -0.02 2.22 16 34 H 0.11 2.19 6.86 -2.39 -0.02 2.17 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 37 H 0.00 -0.25 7.68 -2.39 -0.02 -0.27 16 38 H 0.02 1.20 7.46 -2.39 -0.02 1.18 16 39 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.19 4.05 3.02 -2.91 -0.01 4.04 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 Total: -1.00 -74.53 350.11 1.97 -72.56 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.03 Total: 15.19 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 6.66 Total: 28.41 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -6.74 Total: -126.90 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.01 Total: -35.34 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.53 1.97 -72.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032591080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.451 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds