Wall clock time and date at job start Tue Mar 31 2020 12:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38000 * 120.81896 * 2 1 4 4 C 1.39124 * 119.26164 * 180.27370 * 3 2 1 5 5 O 1.35503 * 119.52503 * 179.71798 * 4 3 2 6 6 N 1.32436 * 120.94791 * 359.69673 * 4 3 2 7 7 C 1.31628 * 121.80489 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.68988 * 180.02562 * 7 6 4 9 9 C 1.39572 * 120.62502 * 359.97438 * 7 6 4 10 10 C 1.47607 * 120.50299 * 179.97438 * 9 7 6 11 11 O 1.21589 * 119.99915 * 90.00373 * 10 9 7 12 12 N 1.34781 * 120.00270 * 270.00541 * 10 9 7 13 13 C 1.47865 * 126.94263 * 0.02562 * 12 10 9 14 14 C 1.56019 * 105.18833 * 181.95221 * 13 12 10 15 15 H 1.09004 * 116.24282 * 159.73418 * 14 13 12 16 16 C 1.57347 * 99.49544 * 32.81291 * 14 13 12 17 17 C 1.49288 * 126.94449 * 180.02562 * 12 10 9 18 18 H 1.09007 * 116.15456 * 16.70220 * 17 12 10 19 19 C 1.56023 * 104.09388 * 247.55962 * 17 12 10 20 20 N 1.47864 * 105.10072 * 288.76920 * 19 17 12 21 21 C 1.36942 * 126.94553 * 182.02351 * 20 19 17 22 22 H 1.07995 * 120.00394 * 179.97438 * 21 20 19 23 23 C 1.38818 * 119.99554 * 359.96749 * 21 20 19 24 24 N 1.31621 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99592 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47304 * 60.00633 * 25 23 21 27 27 H 1.48505 * 109.46555 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47360 * 300.00076 * 25 23 21 29 29 H 1.09004 * 109.47441 * 270.27829 * 1 2 3 30 30 H 1.09007 * 109.47457 * 30.27213 * 1 2 3 31 31 H 1.09004 * 109.47326 * 150.27516 * 1 2 3 32 32 H 1.07995 * 120.36878 * 0.02562 * 3 2 1 33 33 H 0.96696 * 113.99947 * 269.98073 * 5 4 3 34 34 H 1.09001 * 109.46732 * 269.97474 * 8 7 6 35 35 H 1.08994 * 109.47235 * 29.97472 * 8 7 6 36 36 H 1.09002 * 109.47137 * 149.97816 * 8 7 6 37 37 H 1.09002 * 110.31619 * 300.90948 * 13 12 10 38 38 H 1.09004 * 110.31674 * 62.99498 * 13 12 10 39 39 H 1.08995 * 112.35268 * 191.72200 * 16 14 13 40 40 H 1.08994 * 112.36827 * 64.28349 * 16 14 13 41 41 H 1.09001 * 110.31100 * 47.67384 * 19 17 12 42 42 H 1.08995 * 110.31567 * 169.75899 * 19 17 12 43 43 H 0.97004 * 119.99566 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0058 5 8 4.3043 2.3078 -0.0116 6 7 4.2547 -0.0066 -0.0053 7 6 3.6205 -1.1600 0.0002 8 6 4.4080 -2.4448 0.0011 9 6 2.2255 -1.2043 0.0062 10 6 1.5171 -2.4993 0.0118 11 8 1.2297 -3.0305 1.0671 12 7 1.1887 -3.0929 -1.1529 13 6 1.4614 -2.5879 -2.5156 14 6 0.8245 -3.6393 -3.4762 15 1 0.6129 -3.2999 -4.4902 16 6 -0.3998 -4.0877 -2.5953 17 6 0.4763 -4.3931 -1.3277 18 1 -0.0504 -4.7739 -0.4526 19 6 1.5530 -5.3357 -1.9493 20 7 1.7394 -4.8480 -3.3327 21 6 2.5599 -5.3822 -4.2902 22 1 2.6093 -4.9328 -5.2710 23 6 3.3283 -6.5013 -4.0000 24 7 3.2678 -7.0493 -2.8048 25 14 4.4481 -7.2296 -5.3059 26 1 5.4428 -6.2114 -5.7288 27 1 5.1546 -8.4111 -4.7490 28 1 3.6366 -7.6456 -6.4779 29 1 -0.3634 0.0050 1.0277 30 1 -0.3634 0.8876 -0.5181 31 1 -0.3634 -0.8925 -0.5096 32 1 1.6935 2.1314 0.0004 33 1 4.5038 2.6423 -0.8967 34 1 4.5939 -2.7577 -1.0263 35 1 5.3586 -2.2879 0.5108 36 1 3.8411 -3.2181 0.5195 37 1 0.9948 -1.6132 -2.6584 38 1 2.5359 -2.5211 -2.6865 39 1 -0.8877 -4.9801 -2.9872 40 1 -1.1073 -3.2763 -2.4248 41 1 2.4873 -5.2618 -1.3928 42 1 1.1967 -6.3658 -1.9543 43 1 3.8045 -7.8315 -2.6022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032793521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:58 Heat of formation + Delta-G solvation = 21.131158 kcal Electronic energy + Delta-G solvation = -27675.772524 eV Core-core repulsion = 23916.228776 eV Total energy + Delta-G solvation = -3759.543748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99227 -39.79466 -38.03367 -37.00421 -34.38333 -33.61770 -32.09265 -31.13614 -29.08554 -28.67381 -28.16244 -27.60058 -25.27579 -24.16092 -23.02982 -21.37458 -20.83569 -19.97383 -18.80794 -18.45577 -17.58603 -17.26401 -16.41477 -16.08371 -15.69908 -15.17417 -14.42526 -14.21455 -14.13943 -13.80880 -13.57937 -13.43253 -13.22124 -13.17695 -12.75544 -12.34839 -12.25524 -12.17304 -11.91329 -11.85784 -11.72727 -11.68555 -11.38140 -11.06716 -10.90268 -10.82542 -10.67691 -10.33975 -10.15317 -9.93828 -9.64211 -9.61559 -9.37805 -8.82094 -8.74751 -8.12397 -6.97402 -5.79527 -3.13641 0.73441 1.05737 2.80063 3.11713 3.35537 3.40006 3.41152 3.42173 3.59313 4.36086 4.38240 4.43555 4.62337 4.92052 4.97940 5.07151 5.10348 5.20791 5.27759 5.38697 5.43722 5.48349 5.52463 5.55204 5.68424 5.75603 5.81795 5.83458 5.95455 6.04582 6.09585 6.16721 6.19707 6.31615 6.40613 6.41961 6.50627 6.59580 7.29648 7.34903 7.42242 7.67401 7.80269 7.93832 8.03984 8.40837 9.06637 9.65640 10.36136 11.32440 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.004447 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.814052 B = 6294.600068 C = 7077.649949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.007 3.993 3 C -0.199 4.199 4 C 0.325 3.675 5 O -0.482 6.482 6 N -0.507 5.507 7 C 0.200 3.800 8 C -0.113 4.113 9 C -0.177 4.177 10 C 0.585 3.415 11 O -0.543 6.543 12 N -0.596 5.596 13 C 0.089 3.911 14 C 0.135 3.865 15 H 0.109 0.891 16 C -0.148 4.148 17 C 0.098 3.902 18 H 0.114 0.886 19 C 0.177 3.823 20 N -0.599 5.599 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.920 5.920 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.401 0.599 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 15.285 1.919 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.001 4.001 3 C -0.220 4.220 4 C 0.147 3.853 5 O -0.290 6.290 6 N -0.226 5.226 7 C 0.062 3.938 8 C -0.170 4.170 9 C -0.182 4.182 10 C 0.372 3.628 11 O -0.422 6.422 12 N -0.329 5.329 13 C -0.036 4.036 14 C 0.028 3.972 15 H 0.127 0.873 16 C -0.188 4.188 17 C -0.004 4.004 18 H 0.132 0.868 19 C 0.052 3.948 20 N -0.325 5.325 21 C -0.358 4.358 22 H 0.097 0.903 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.259 0.741 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.740 14.833 3.121 15.881 hybrid contribution 0.042 -0.135 -1.112 1.121 sum -4.698 14.698 2.009 15.560 Atomic orbital electron populations 1.20904 0.89481 1.03716 1.03597 1.20161 0.96859 0.90867 0.92178 1.21794 0.93690 0.99122 1.07435 1.19225 0.86995 0.85030 0.94063 1.84719 1.76116 1.34193 1.33927 1.66994 1.41874 0.97804 1.15971 1.21112 0.89281 0.93104 0.90340 1.20891 1.00218 0.91382 1.04529 1.20738 0.94863 0.94480 1.08101 1.17393 0.78748 0.83622 0.83071 1.90795 1.55648 1.65388 1.30334 1.49224 1.55931 1.22548 1.05158 1.23213 1.01280 0.97023 0.82133 1.23790 0.89577 0.88145 0.95730 0.87341 1.24124 0.96672 1.01360 0.96615 1.24434 0.94641 0.84209 0.97166 0.86800 1.21898 0.94411 0.94165 0.84352 1.45895 1.47090 1.29703 1.09841 1.18986 1.16319 1.08293 0.92200 0.90308 1.24788 1.00171 0.98235 0.96953 1.69894 1.43569 1.23780 1.19392 0.86214 0.80449 0.78562 0.80582 1.21192 1.21599 1.21162 0.89773 0.90408 0.90589 0.83871 0.74117 0.88913 0.89903 0.89897 0.93032 0.91071 0.89582 0.91529 0.93316 0.92617 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.68 36.01 0.35 -0.91 16 2 C 0.01 0.10 5.95 -103.96 -0.62 -0.52 16 3 C -0.20 -2.32 9.73 -39.34 -0.38 -2.70 16 4 C 0.33 4.32 7.74 -16.96 -0.13 4.19 16 5 O -0.48 -5.25 13.55 -18.20 -0.25 -5.49 16 6 N -0.51 -7.99 10.28 -9.20 -0.09 -8.09 16 7 C 0.20 3.27 6.82 -82.18 -0.56 2.71 16 8 C -0.11 -1.84 9.78 36.00 0.35 -1.49 16 9 C -0.18 -2.82 4.92 -104.83 -0.52 -3.34 16 10 C 0.58 10.54 4.40 -12.44 -0.05 10.49 16 11 O -0.54 -11.44 17.45 5.29 0.09 -11.34 16 12 N -0.60 -10.39 2.94 -157.95 -0.46 -10.86 16 13 C 0.09 1.44 5.97 -1.68 -0.01 1.43 16 14 C 0.14 2.34 5.70 -60.66 -0.35 1.99 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C -0.15 -2.31 6.84 -22.15 -0.15 -2.46 16 17 C 0.10 1.77 5.18 -62.55 -0.32 1.45 16 18 H 0.11 2.01 8.06 -51.93 -0.42 1.59 16 19 C 0.18 4.03 4.79 -1.68 -0.01 4.02 16 20 N -0.60 -13.72 3.09 -153.84 -0.48 -14.20 16 21 C -0.23 -5.90 10.42 -15.05 -0.16 -6.06 16 22 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 23 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -25.96 10.56 55.49 0.59 -25.37 16 25 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.08 0.88 7.19 -51.93 -0.37 0.51 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.40 2.26 9.06 45.56 0.41 2.68 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.47 7.06 -51.93 -0.37 1.10 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 42 H 0.06 1.41 7.46 -51.93 -0.39 1.03 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -32.56 356.09 -8.22 -40.78 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.30 Total: 4.38 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -2.65 Total: 8.59 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.45 Total: -58.51 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.15 Total: -16.84 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.56 -8.22 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032793521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.912 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds