Wall clock time and date at job start Tue Mar 31 2020 12:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38000 * 120.81896 * 2 1 4 4 C 1.39124 * 119.26164 * 180.27370 * 3 2 1 5 5 O 1.35503 * 119.52503 * 179.71798 * 4 3 2 6 6 N 1.32436 * 120.94791 * 359.69673 * 4 3 2 7 7 C 1.31628 * 121.80489 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.68988 * 180.02562 * 7 6 4 9 9 C 1.39572 * 120.62502 * 359.97438 * 7 6 4 10 10 C 1.47607 * 120.50299 * 179.97438 * 9 7 6 11 11 O 1.21589 * 119.99915 * 90.00373 * 10 9 7 12 12 N 1.34781 * 120.00270 * 270.00541 * 10 9 7 13 13 C 1.47865 * 126.94263 * 0.02562 * 12 10 9 14 14 C 1.56019 * 105.18833 * 181.95221 * 13 12 10 15 15 H 1.09004 * 116.24282 * 159.73418 * 14 13 12 16 16 C 1.57347 * 99.49544 * 32.81291 * 14 13 12 17 17 C 1.49288 * 126.94449 * 180.02562 * 12 10 9 18 18 H 1.09007 * 116.15456 * 16.70220 * 17 12 10 19 19 C 1.56023 * 104.09388 * 247.55962 * 17 12 10 20 20 N 1.47864 * 105.10072 * 288.76920 * 19 17 12 21 21 C 1.36942 * 126.94553 * 182.02351 * 20 19 17 22 22 H 1.07995 * 120.00394 * 179.97438 * 21 20 19 23 23 C 1.38818 * 119.99554 * 359.96749 * 21 20 19 24 24 N 1.31621 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99592 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47304 * 60.00633 * 25 23 21 27 27 H 1.48505 * 109.46555 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47360 * 300.00076 * 25 23 21 29 29 H 1.09004 * 109.47441 * 270.27829 * 1 2 3 30 30 H 1.09007 * 109.47457 * 30.27213 * 1 2 3 31 31 H 1.09004 * 109.47326 * 150.27516 * 1 2 3 32 32 H 1.07995 * 120.36878 * 0.02562 * 3 2 1 33 33 H 0.96696 * 113.99947 * 269.98073 * 5 4 3 34 34 H 1.09001 * 109.46732 * 269.97474 * 8 7 6 35 35 H 1.08994 * 109.47235 * 29.97472 * 8 7 6 36 36 H 1.09002 * 109.47137 * 149.97816 * 8 7 6 37 37 H 1.09002 * 110.31619 * 300.90948 * 13 12 10 38 38 H 1.09004 * 110.31674 * 62.99498 * 13 12 10 39 39 H 1.08995 * 112.35268 * 191.72200 * 16 14 13 40 40 H 1.08994 * 112.36827 * 64.28349 * 16 14 13 41 41 H 1.09001 * 110.31100 * 47.67384 * 19 17 12 42 42 H 1.08995 * 110.31567 * 169.75899 * 19 17 12 43 43 H 0.97004 * 119.99566 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0058 5 8 4.3043 2.3078 -0.0116 6 7 4.2547 -0.0066 -0.0053 7 6 3.6205 -1.1600 0.0002 8 6 4.4080 -2.4448 0.0011 9 6 2.2255 -1.2043 0.0062 10 6 1.5171 -2.4993 0.0118 11 8 1.2297 -3.0305 1.0671 12 7 1.1887 -3.0929 -1.1529 13 6 1.4614 -2.5879 -2.5156 14 6 0.8245 -3.6393 -3.4762 15 1 0.6129 -3.2999 -4.4902 16 6 -0.3998 -4.0877 -2.5953 17 6 0.4763 -4.3931 -1.3277 18 1 -0.0504 -4.7739 -0.4526 19 6 1.5530 -5.3357 -1.9493 20 7 1.7394 -4.8480 -3.3327 21 6 2.5599 -5.3822 -4.2902 22 1 2.6093 -4.9328 -5.2710 23 6 3.3283 -6.5013 -4.0000 24 7 3.2678 -7.0493 -2.8048 25 14 4.4481 -7.2296 -5.3059 26 1 5.4428 -6.2114 -5.7288 27 1 5.1546 -8.4111 -4.7490 28 1 3.6366 -7.6456 -6.4779 29 1 -0.3634 0.0050 1.0277 30 1 -0.3634 0.8876 -0.5181 31 1 -0.3634 -0.8925 -0.5096 32 1 1.6935 2.1314 0.0004 33 1 4.5038 2.6423 -0.8967 34 1 4.5939 -2.7577 -1.0263 35 1 5.3586 -2.2879 0.5108 36 1 3.8411 -3.2181 0.5195 37 1 0.9948 -1.6132 -2.6584 38 1 2.5359 -2.5211 -2.6865 39 1 -0.8877 -4.9801 -2.9872 40 1 -1.1073 -3.2763 -2.4248 41 1 2.4873 -5.2618 -1.3928 42 1 1.1967 -6.3658 -1.9543 43 1 3.8045 -7.8315 -2.6022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032793521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:57 Heat of formation + Delta-G solvation = -3.598998 kcal Electronic energy + Delta-G solvation = -27676.844904 eV Core-core repulsion = 23916.228776 eV Total energy + Delta-G solvation = -3760.616128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18244 -41.13428 -39.37698 -38.08676 -35.49180 -35.32347 -33.53445 -32.57489 -30.66908 -30.29902 -29.07512 -28.81055 -26.97441 -25.56748 -24.44160 -22.45729 -22.25289 -21.45985 -20.27495 -19.45902 -19.09770 -18.32807 -18.07974 -17.52483 -16.88579 -16.62218 -16.03962 -15.73026 -15.36892 -15.09535 -14.85607 -14.71451 -14.32181 -14.27571 -13.92591 -13.84188 -13.57910 -13.42670 -13.37433 -13.17092 -13.05595 -12.97968 -12.81630 -12.67299 -12.62955 -12.32779 -12.16089 -12.09777 -11.89086 -11.47664 -11.27592 -10.73777 -10.63355 -10.54088 -9.91550 -9.61988 -8.89328 -7.81673 -5.16121 -0.33216 0.02705 1.39956 1.47588 1.49664 1.55740 1.85783 2.33002 2.48709 2.55064 3.26840 3.33703 3.36290 3.41621 3.50736 3.75531 3.85786 3.94042 4.03779 4.16896 4.19344 4.27679 4.32251 4.44307 4.49147 4.54487 4.63071 4.66154 4.79475 4.81650 4.88777 4.93033 5.02180 5.04683 5.11909 5.15489 5.24062 5.40051 5.44568 5.54470 5.68625 6.09655 6.51374 6.55318 6.78253 6.99479 7.05338 7.71303 8.43164 9.28979 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.004447 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.814052 B = 6294.600068 C = 7077.649949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.011 3.989 3 C -0.181 4.181 4 C 0.326 3.674 5 O -0.484 6.484 6 N -0.531 5.531 7 C 0.183 3.817 8 C -0.104 4.104 9 C -0.198 4.198 10 C 0.589 3.411 11 O -0.582 6.582 12 N -0.595 5.595 13 C 0.097 3.903 14 C 0.133 3.867 15 H 0.140 0.860 16 C -0.123 4.123 17 C 0.101 3.899 18 H 0.117 0.883 19 C 0.189 3.811 20 N -0.620 5.620 21 C -0.226 4.226 22 H 0.093 0.907 23 C -0.068 4.068 24 N -0.956 5.956 25 Si 0.972 3.028 26 H -0.279 1.279 27 H -0.304 1.304 28 H -0.274 1.274 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.186 0.814 33 H 0.424 0.576 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.109 0.891 41 H -0.002 1.002 42 H 0.018 0.982 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 19.273 0.441 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.004 3.996 3 C -0.201 4.201 4 C 0.147 3.853 5 O -0.295 6.295 6 N -0.252 5.252 7 C 0.045 3.955 8 C -0.161 4.161 9 C -0.203 4.203 10 C 0.378 3.622 11 O -0.463 6.463 12 N -0.326 5.326 13 C -0.027 4.027 14 C 0.028 3.972 15 H 0.157 0.843 16 C -0.162 4.162 17 C -0.002 4.002 18 H 0.135 0.865 19 C 0.063 3.937 20 N -0.346 5.346 21 C -0.355 4.355 22 H 0.111 0.889 23 C -0.261 4.261 24 N -0.605 5.605 25 Si 0.801 3.199 26 H -0.206 1.206 27 H -0.231 1.231 28 H -0.200 1.200 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.203 0.797 33 H 0.287 0.713 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.016 0.984 42 H 0.036 0.964 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.785 18.887 1.581 20.131 hybrid contribution 0.702 -1.220 -0.642 1.547 sum -6.083 17.667 0.938 18.708 Atomic orbital electron populations 1.21002 0.87241 1.05017 1.04249 1.20521 0.98362 0.89969 0.90796 1.22143 0.92834 1.00173 1.04971 1.19530 0.88009 0.84828 0.92933 1.84681 1.75933 1.32864 1.36062 1.66932 1.42744 0.98396 1.17145 1.20888 0.89562 0.93035 0.92007 1.20705 1.00555 0.91638 1.03244 1.20622 0.94657 0.94455 1.10549 1.17713 0.77916 0.84199 0.82410 1.90762 1.57189 1.66697 1.31684 1.49231 1.55652 1.21965 1.05771 1.23107 1.00051 0.98533 0.80980 1.24216 0.89091 0.86069 0.97872 0.84299 1.24041 0.96105 1.02625 0.93471 1.24276 0.93837 0.83648 0.98464 0.86544 1.21485 0.93581 0.93763 0.84862 1.46160 1.47767 1.31450 1.09203 1.19453 1.15485 1.07498 0.93050 0.88945 1.25570 1.02395 0.99505 0.98640 1.70137 1.44833 1.24128 1.21405 0.85242 0.78818 0.77284 0.78533 1.20554 1.23051 1.20008 0.89404 0.86608 0.91669 0.79713 0.71346 0.90494 0.88963 0.92405 0.88684 0.93683 0.89721 0.87291 0.98355 0.96382 0.94801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.68 71.24 0.69 -1.27 16 2 C 0.01 0.26 5.95 -19.43 -0.12 0.15 16 3 C -0.18 -3.40 9.73 22.43 0.22 -3.19 16 4 C 0.33 7.71 7.74 84.81 0.66 8.37 16 5 O -0.48 -8.87 13.55 -88.04 -1.19 -10.07 16 6 N -0.53 -16.29 10.28 -295.89 -3.04 -19.33 16 7 C 0.18 6.05 6.82 42.91 0.29 6.35 16 8 C -0.10 -3.66 9.78 71.23 0.70 -2.96 16 9 C -0.20 -6.16 4.92 -20.00 -0.10 -6.26 16 10 C 0.59 21.41 4.40 86.72 0.38 21.79 16 11 O -0.58 -25.28 17.45 -4.00 -0.07 -25.35 16 12 N -0.59 -20.55 2.94 -771.91 -2.27 -22.82 16 13 C 0.10 2.99 5.97 87.16 0.52 3.51 16 14 C 0.13 4.28 5.70 46.42 0.26 4.54 16 15 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 16 C -0.12 -3.51 6.84 33.56 0.23 -3.28 16 17 C 0.10 3.68 5.18 46.94 0.24 3.92 16 18 H 0.12 4.20 8.06 -2.38 -0.02 4.18 16 19 C 0.19 9.13 4.79 87.17 0.42 9.55 16 20 N -0.62 -28.75 3.09 -640.64 -1.98 -30.73 16 21 C -0.23 -11.72 10.42 84.03 0.88 -10.85 16 22 H 0.09 4.44 7.83 -2.91 -0.02 4.41 16 23 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 24 N -0.96 -57.38 10.56 21.65 0.23 -57.15 16 25 Si 0.97 44.88 29.55 68.60 2.03 46.90 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.04 8.10 -2.38 -0.02 1.02 16 31 H 0.06 1.25 7.19 -2.38 -0.02 1.23 16 32 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.42 3.21 9.06 -74.06 -0.67 2.54 16 34 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.09 2.92 8.14 -2.39 -0.02 2.91 16 36 H 0.06 2.27 7.06 -2.39 -0.02 2.25 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.00 -0.10 7.68 -2.39 -0.02 -0.12 16 42 H 0.02 0.99 7.46 -2.39 -0.02 0.97 16 43 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -76.76 356.09 -0.19 -76.95 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.37 Total: 14.55 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 5.74 Total: 27.05 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -7.06 Total: -130.04 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.26 Total: -35.42 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -76.76 -0.19 -76.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032793521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.354 kcal (2) G-P(sol) polarization free energy of solvation -76.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds