Wall clock time and date at job start Tue Mar 31 2020 11:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00165 * 2 1 4 4 H 1.48499 * 109.46876 * 274.74191 * 3 2 1 5 5 H 1.48498 * 109.46773 * 34.73933 * 3 2 1 6 6 H 1.48493 * 109.47170 * 154.73597 * 3 2 1 7 7 C 1.38814 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00117 * 199.53225 * 7 2 1 9 9 N 1.36932 * 119.99938 * 19.52503 * 7 2 1 10 10 C 1.50170 * 120.53709 * 31.14883 * 9 7 2 11 11 C 1.46245 * 107.53025 * 109.61143 * 10 9 7 12 12 C 1.52526 * 114.28071 * 58.41043 * 11 10 9 13 13 C 1.50127 * 105.41102 * 270.58976 * 12 11 10 14 14 C 1.54844 * 110.81442 * 97.68544 * 13 12 11 15 15 H 1.08996 * 109.36237 * 81.19769 * 14 13 12 16 16 N 1.46494 * 109.35721 * 200.92551 * 14 13 12 17 17 C 1.34785 * 119.99950 * 205.27248 * 16 14 13 18 18 O 1.21731 * 119.99464 * 359.97438 * 17 16 14 19 19 C 1.46493 * 119.99985 * 180.02562 * 17 16 14 20 20 C 1.37780 * 125.85375 * 180.02562 * 19 17 16 21 21 C 1.39930 * 107.68294 * 179.97438 * 20 19 17 22 22 O 1.35129 * 145.13941 * 179.97438 * 21 20 19 23 23 C 1.34383 * 109.62155 * 180.02562 * 22 21 20 24 24 C 1.34452 * 109.44850 * 0.17937 * 23 22 21 25 25 C 1.39135 * 107.40642 * 0.02562 * 21 20 19 26 26 N 1.37105 * 108.11092 * 0.02562 * 25 21 20 27 27 H 0.97001 * 125.74767 * 180.02562 * 26 25 21 28 28 C 1.43137 * 120.56289 * 211.09628 * 9 7 2 29 29 H 0.97002 * 120.00345 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.84715 * 350.10501 * 10 9 7 31 31 H 1.08996 * 109.84653 * 229.11334 * 10 9 7 32 32 H 1.09003 * 108.52104 * 297.16504 * 11 10 9 33 33 H 1.08999 * 108.39780 * 179.56527 * 11 10 9 34 34 H 1.08995 * 110.24755 * 151.61972 * 12 11 10 35 35 H 1.09000 * 110.25043 * 29.56103 * 12 11 10 36 36 H 1.09000 * 109.21015 * 337.34138 * 13 12 11 37 37 H 1.08997 * 109.16982 * 218.00254 * 13 12 11 38 38 H 0.96998 * 120.00224 * 25.27434 * 16 14 13 39 39 H 1.07995 * 126.15694 * 0.02562 * 20 19 17 40 40 H 1.08007 * 125.27052 * 180.02562 * 23 22 21 41 41 H 1.08002 * 126.41312 * 179.71180 * 24 23 22 42 42 H 1.09007 * 108.12520 * 149.80539 * 28 9 7 43 43 H 1.09001 * 107.99329 * 33.34427 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3974 2.1042 -1.3953 5 1 1.5013 2.6216 0.7978 6 1 3.5941 1.4133 0.5975 7 6 2.0102 -1.2022 0.0005 8 1 3.0436 -1.2289 0.3132 9 7 1.3846 -2.3541 -0.3953 10 6 0.2986 -2.3152 -1.4317 11 6 0.8284 -2.9301 -2.6482 12 6 1.3040 -4.3681 -2.4681 13 6 2.7485 -4.2639 -2.0726 14 6 2.9075 -4.3719 -0.5362 15 1 2.8836 -5.4216 -0.2433 16 7 4.1898 -3.7858 -0.1383 17 6 4.7896 -4.1867 1.0002 18 8 4.2655 -5.0354 1.6980 19 6 6.0716 -3.6001 1.3984 20 6 6.7877 -3.9190 2.5315 21 6 7.9476 -3.1363 2.5355 22 8 9.0838 -2.8412 3.2049 23 6 9.7707 -1.9003 2.5350 24 6 9.0970 -1.5616 1.4218 25 6 7.9189 -2.3438 1.3923 26 7 6.7694 -2.6318 0.7028 27 1 6.4932 -2.2253 -0.1335 28 6 1.7556 -3.6153 0.1709 29 1 -0.4851 0.8400 -0.0004 30 1 0.0155 -1.2820 -1.6324 31 1 -0.5679 -2.8757 -1.0809 32 1 1.6664 -2.3300 -3.0029 33 1 0.0477 -2.9163 -3.4087 34 1 1.2080 -4.9172 -3.4047 35 1 0.7318 -4.8590 -1.6809 36 1 3.1438 -3.3049 -2.4075 37 1 3.3089 -5.0686 -2.5486 38 1 4.6071 -3.1093 -0.6941 39 1 6.5051 -4.6433 3.2811 40 1 10.7162 -1.4796 2.8443 41 1 9.3987 -0.8289 0.6879 42 1 0.8758 -4.2590 0.1708 43 1 2.0461 -3.4464 1.2079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034232521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:08 Heat of formation + Delta-G solvation = 32.267570 kcal Electronic energy + Delta-G solvation = -27031.929387 eV Core-core repulsion = 23272.868550 eV Total energy + Delta-G solvation = -3759.060837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.90686 -41.32369 -40.03491 -39.03869 -35.95814 -35.02084 -33.33644 -32.85260 -32.07191 -31.44083 -29.30605 -27.97601 -26.03238 -25.01810 -24.10388 -22.67916 -21.79886 -21.71582 -20.94238 -20.82085 -19.37862 -18.52484 -18.11387 -17.30314 -17.23185 -16.91504 -16.52275 -16.44623 -15.96846 -15.63879 -15.39327 -15.08773 -14.74517 -14.51913 -14.33919 -14.21005 -13.82202 -13.66560 -13.46357 -13.33668 -13.04139 -12.78421 -12.76105 -12.58194 -12.42934 -12.00253 -11.66296 -11.51404 -11.28102 -11.19777 -11.07139 -11.05348 -10.56445 -10.14330 -9.66113 -8.89883 -8.55205 -7.85930 -5.33678 -0.04130 1.21475 1.42323 1.44472 1.49317 1.51838 1.68970 1.82635 2.25116 2.36046 2.49356 3.24979 3.60143 3.61570 3.74753 3.89507 3.96619 4.10550 4.28345 4.32831 4.45829 4.49902 4.53000 4.59486 4.71306 4.76017 4.76790 4.90298 5.02326 5.03209 5.16884 5.25492 5.26472 5.41556 5.43263 5.48263 5.54143 5.63554 5.66257 5.73157 5.83011 6.13225 6.30344 6.44427 6.52180 7.09227 7.14134 7.87846 8.41796 9.18506 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.004430 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.980946 B = 6318.609248 C = 7777.521217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.046 4.046 3 Si 0.955 3.045 4 H -0.282 1.282 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.589 5.589 10 C 0.151 3.849 11 C -0.125 4.125 12 C -0.105 4.105 13 C -0.102 4.102 14 C 0.127 3.873 15 H 0.084 0.916 16 N -0.696 5.696 17 C 0.587 3.413 18 O -0.567 6.567 19 C -0.003 4.003 20 C -0.095 4.095 21 C -0.074 4.074 22 O -0.184 6.184 23 C 0.029 3.971 24 C -0.216 4.216 25 C 0.009 3.991 26 N -0.521 5.521 27 H 0.431 0.569 28 C 0.153 3.847 29 H 0.248 0.752 30 H 0.067 0.933 31 H 0.009 0.991 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.402 0.598 39 H 0.158 0.842 40 H 0.262 0.738 41 H 0.182 0.818 42 H 0.037 0.963 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.152 -5.200 -4.382 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.242 4.242 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.078 0.922 9 N -0.311 5.311 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.142 4.142 13 C -0.140 4.140 14 C 0.020 3.980 15 H 0.102 0.898 16 N -0.344 5.344 17 C 0.375 3.625 18 O -0.447 6.447 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.125 4.125 22 O -0.083 6.083 23 C -0.038 4.038 24 C -0.237 4.237 25 C -0.105 4.105 26 N -0.126 5.126 27 H 0.271 0.729 28 C 0.023 3.977 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.238 0.762 39 H 0.176 0.824 40 H 0.277 0.723 41 H 0.199 0.801 42 H 0.055 0.945 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 16.621 -5.754 -3.768 17.988 hybrid contribution -0.120 1.727 -0.307 1.758 sum 16.501 -4.027 -4.075 17.468 Atomic orbital electron populations 1.70157 1.06612 1.25599 1.54905 1.25682 0.95749 1.01139 1.01616 0.85444 0.78246 0.80514 0.77392 1.20859 1.22910 1.19742 1.19243 0.93320 0.86208 1.38741 0.92240 1.43996 1.41328 1.01316 1.44414 1.20255 0.88846 1.00397 0.87768 1.20903 1.00735 0.96561 0.98178 1.20941 0.95433 0.96111 1.01756 1.21618 0.97869 1.02318 0.92147 1.22679 0.82315 0.96877 0.96139 0.89768 1.45816 1.22916 1.42361 1.23328 1.16981 0.82705 0.81538 0.81309 1.90815 1.65820 1.34368 1.53661 1.20112 0.96075 0.98906 0.96499 1.19993 0.90950 1.02661 0.98687 1.19367 0.92306 1.05606 0.95261 1.84021 1.27965 1.50448 1.45848 1.25107 0.98611 0.89291 0.90775 1.21013 0.93027 1.06149 1.03556 1.19581 0.92496 1.03139 0.95328 1.41107 1.16291 1.33064 1.22100 0.72875 1.20651 0.95123 0.88022 0.93866 0.94255 0.91507 0.97222 0.93099 0.92547 0.89349 0.92188 0.91692 0.90501 0.76250 0.82435 0.72252 0.80102 0.94499 0.97618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.52 11.25 21.65 0.24 -53.28 16 2 C -0.05 -2.49 4.93 84.86 0.42 -2.07 16 3 Si 0.95 43.63 29.60 68.60 2.03 45.66 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -12.72 9.54 84.03 0.80 -11.92 16 8 H 0.06 3.05 7.90 -2.91 -0.02 3.03 16 9 N -0.59 -27.75 2.56 -708.53 -1.81 -29.56 16 10 C 0.15 6.75 5.36 83.58 0.45 7.20 16 11 C -0.13 -4.26 5.20 28.36 0.15 -4.11 16 12 C -0.10 -2.89 5.76 29.51 0.17 -2.72 16 13 C -0.10 -2.76 5.23 30.30 0.16 -2.60 16 14 C 0.13 4.19 2.92 46.27 0.14 4.33 16 15 H 0.08 2.79 7.57 -2.39 -0.02 2.77 16 16 N -0.70 -21.92 5.08 -440.60 -2.24 -24.15 16 17 C 0.59 20.55 7.63 86.39 0.66 21.21 16 18 O -0.57 -23.54 16.52 -4.45 -0.07 -23.62 16 19 C 0.00 -0.10 7.03 40.19 0.28 0.18 16 20 C -0.09 -2.97 10.58 22.57 0.24 -2.74 16 21 C -0.07 -2.15 8.20 22.90 0.19 -1.96 16 22 O -0.18 -4.50 10.68 -11.59 -0.12 -4.62 16 23 C 0.03 0.44 12.02 66.95 0.80 1.25 16 24 C -0.22 -3.88 10.89 22.19 0.24 -3.64 16 25 C 0.01 0.23 8.11 39.32 0.32 0.55 16 26 N -0.52 -13.43 6.08 -176.19 -1.07 -14.50 16 27 H 0.43 8.85 8.16 -92.71 -0.76 8.09 16 28 C 0.15 6.47 4.76 87.65 0.42 6.89 16 29 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.07 3.46 5.65 -2.39 -0.01 3.45 16 31 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 32 H 0.05 1.80 6.93 -2.39 -0.02 1.78 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.78 6.28 -2.39 -0.02 1.77 16 36 H 0.06 1.87 6.59 -2.39 -0.02 1.86 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.40 10.98 7.53 -92.71 -0.70 10.28 16 39 H 0.16 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.26 0.92 8.06 -2.91 -0.02 0.89 16 41 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.04 1.54 6.88 -2.38 -0.02 1.52 16 43 H 0.01 0.27 7.85 -2.39 -0.02 0.25 16 Total: -1.00 -71.44 347.61 2.00 -69.45 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.39 Total: 24.77 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.43 Total: 9.85 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -4.88 Total: -121.50 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.20 Total: -28.24 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.44 2.00 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034232521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.715 kcal (2) G-P(sol) polarization free energy of solvation -71.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds