Wall clock time and date at job start Tue Mar 31 2020 11:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99993 * 2 1 4 4 H 1.48504 * 109.46761 * 90.00684 * 3 2 1 5 5 H 1.48493 * 109.47507 * 330.00506 * 3 2 1 6 6 H 1.48504 * 109.47197 * 210.00350 * 3 2 1 7 7 C 1.38808 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00365 * 150.02484 * 7 2 1 9 9 N 1.36946 * 119.99858 * 330.02303 * 7 2 1 10 10 C 1.44570 * 118.64289 * 325.32241 * 9 7 2 11 11 C 1.54861 * 109.60423 * 270.70557 * 10 9 7 12 12 C 1.47092 * 110.32121 * 288.73804 * 11 10 9 13 13 C 1.52568 * 114.32960 * 62.79390 * 12 11 10 14 14 C 1.50882 * 109.36232 * 274.99060 * 13 12 11 15 15 H 1.09007 * 109.36506 * 331.69847 * 14 13 12 16 16 N 1.46494 * 109.36937 * 212.07788 * 14 13 12 17 17 C 1.34774 * 120.00104 * 154.99822 * 16 14 13 18 18 O 1.21729 * 120.00188 * 0.02562 * 17 16 14 19 19 C 1.46494 * 120.00104 * 180.02562 * 17 16 14 20 20 C 1.37782 * 125.85644 * 180.02562 * 19 17 16 21 21 C 1.39940 * 107.68312 * 179.97438 * 20 19 17 22 22 O 1.35118 * 145.13945 * 179.97438 * 21 20 19 23 23 C 1.34381 * 109.62553 * 180.02562 * 22 21 20 24 24 C 1.34462 * 109.44729 * 0.02562 * 23 22 21 25 25 C 1.39132 * 107.40597 * 0.02562 * 21 20 19 26 26 N 1.37113 * 108.11000 * 359.75198 * 25 21 20 27 27 H 0.97002 * 125.74568 * 180.24413 * 26 25 21 28 28 C 1.47602 * 118.64162 * 145.05343 * 9 7 2 29 29 H 0.97000 * 120.00266 * 175.10798 * 1 2 3 30 30 H 1.09002 * 109.45189 * 30.74634 * 10 9 7 31 31 H 1.08998 * 109.44922 * 150.69078 * 10 9 7 32 32 H 1.09004 * 109.32896 * 48.99045 * 11 10 9 33 33 H 1.08994 * 109.33503 * 168.64598 * 11 10 9 34 34 H 1.09006 * 108.51724 * 184.05349 * 12 11 10 35 35 H 1.09010 * 108.51133 * 301.69818 * 12 11 10 36 36 H 1.08997 * 109.48810 * 34.96022 * 13 12 11 37 37 H 1.09001 * 109.48797 * 155.02452 * 13 12 11 38 38 H 0.96998 * 119.99733 * 335.00074 * 16 14 13 39 39 H 1.07993 * 126.15786 * 359.95798 * 20 19 17 40 40 H 1.08000 * 125.27523 * 179.97438 * 23 22 21 41 41 H 1.07993 * 126.41589 * 179.97438 * 24 23 22 42 42 H 1.09000 * 108.94607 * 258.57523 * 28 9 7 43 43 H 1.08999 * 108.95016 * 17.20826 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 1.4001 5 1 1.4477 2.6527 -0.6999 6 1 3.5477 1.4402 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 2.9819 -1.2645 -0.4679 9 7 1.4629 -2.3090 0.5916 10 6 0.6551 -2.1326 1.7775 11 6 1.5572 -2.1949 3.0346 12 6 2.0265 -3.5708 3.2590 13 6 2.9003 -4.1274 2.1391 14 6 2.0203 -4.7036 1.0573 15 1 1.0839 -5.0465 1.4976 16 7 2.7024 -5.8373 0.4286 17 6 1.9847 -6.8047 -0.1759 18 8 0.7696 -6.7362 -0.1998 19 6 2.6668 -7.9387 -0.8041 20 6 2.0557 -8.9897 -1.4525 21 6 3.0606 -9.8521 -1.9051 22 8 3.3204 -11.0021 -2.5652 23 6 4.6480 -11.2046 -2.6137 24 6 5.2780 -10.1949 -1.9881 25 6 4.2814 -9.3068 -1.5204 26 7 4.0334 -8.1352 -0.8527 27 1 4.7045 -7.5447 -0.4760 28 6 1.7171 -3.6323 -0.0109 29 1 -0.4850 -0.8370 -0.0716 30 1 0.1564 -1.1642 1.7362 31 1 -0.0927 -2.9240 1.8283 32 1 2.4166 -1.5390 2.8949 33 1 0.9886 -1.8641 3.9036 34 1 2.5969 -3.5949 4.1876 35 1 1.1572 -4.2189 3.3713 36 1 3.5115 -3.3267 1.7226 37 1 3.5469 -4.9095 2.5369 38 1 3.6707 -5.8917 0.4474 39 1 0.9926 -9.1239 -1.5870 40 1 5.1335 -12.0481 -3.0818 41 1 6.3451 -10.0830 -1.8655 42 1 0.8396 -3.9355 -0.5821 43 1 2.5685 -3.5557 -0.6872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034232522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:11 Heat of formation + Delta-G solvation = 25.218004 kcal Electronic energy + Delta-G solvation = -26420.546799 eV Core-core repulsion = 22661.180270 eV Total energy + Delta-G solvation = -3759.366529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.94407 -41.47436 -40.12604 -39.14797 -36.50375 -35.13075 -33.37212 -32.94733 -32.02217 -31.43720 -29.30289 -27.77478 -26.20198 -25.38232 -24.00262 -22.72476 -21.84828 -21.77343 -21.19856 -20.88174 -19.43391 -19.24555 -18.15334 -17.56428 -17.30168 -16.77367 -16.55102 -16.34476 -15.93102 -15.61272 -15.58029 -15.24995 -14.91961 -14.56756 -14.49973 -14.27718 -14.20507 -13.98887 -13.67949 -13.45445 -12.84968 -12.79493 -12.61571 -12.42346 -12.10072 -11.89822 -11.85679 -11.61647 -11.47323 -11.36685 -11.22936 -11.10248 -10.58915 -10.21903 -9.69144 -8.93990 -8.86812 -8.18800 -5.49722 -0.11648 1.16348 1.45368 1.58448 1.65374 1.66789 1.67780 1.82973 2.13662 2.21079 2.66029 3.17516 3.46837 3.58973 3.71150 3.77905 3.91662 3.93405 4.12697 4.24537 4.27876 4.31783 4.44742 4.47348 4.65699 4.68655 4.73955 4.77343 4.91378 4.97017 4.99192 5.01075 5.20737 5.22756 5.30116 5.35609 5.41171 5.49442 5.53018 5.60375 5.91644 6.11224 6.25551 6.36179 6.41497 6.95857 7.12446 7.79878 8.17092 8.92269 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.002819 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.555383 B = 9929.518056 C =10266.446854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.069 4.069 3 Si 1.113 2.887 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.359 4.359 8 H 0.045 0.955 9 N -0.596 5.596 10 C 0.141 3.859 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.105 4.105 14 C 0.150 3.850 15 H 0.067 0.933 16 N -0.702 5.702 17 C 0.589 3.411 18 O -0.565 6.565 19 C -0.004 4.004 20 C -0.093 4.093 21 C -0.077 4.077 22 O -0.187 6.187 23 C 0.029 3.971 24 C -0.214 4.214 25 C 0.017 3.983 26 N -0.516 5.516 27 H 0.435 0.565 28 C 0.145 3.855 29 H 0.251 0.749 30 H 0.044 0.956 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.412 0.588 39 H 0.154 0.846 40 H 0.260 0.740 41 H 0.186 0.814 42 H -0.017 1.017 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.554 -21.175 1.400 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.267 4.267 3 Si 0.937 3.063 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.489 4.489 8 H 0.062 0.938 9 N -0.320 5.320 10 C 0.014 3.986 11 C -0.169 4.169 12 C -0.138 4.138 13 C -0.143 4.143 14 C 0.044 3.956 15 H 0.085 0.915 16 N -0.353 5.353 17 C 0.376 3.624 18 O -0.443 6.443 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.128 4.128 22 O -0.085 6.085 23 C -0.038 4.038 24 C -0.235 4.235 25 C -0.097 4.097 26 N -0.122 5.122 27 H 0.276 0.724 28 C 0.019 3.981 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.249 0.751 39 H 0.172 0.828 40 H 0.276 0.724 41 H 0.203 0.797 42 H 0.001 0.999 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.378 -19.546 1.412 24.306 hybrid contribution 0.264 -1.106 -0.304 1.177 sum 14.642 -20.652 1.108 25.340 Atomic orbital electron populations 1.70875 1.07990 1.29071 1.48661 1.27197 0.96211 1.05069 0.98208 0.82890 0.74138 0.72002 0.77237 1.20557 1.22415 1.19743 1.20081 0.99898 0.90839 1.38046 0.93769 1.43734 1.59927 1.01508 1.26789 1.20923 0.92406 0.99166 0.86119 1.21207 1.00122 0.97822 0.97700 1.20251 0.99278 0.95879 0.98363 1.21203 0.97877 1.00649 0.94542 1.21188 0.96391 0.84677 0.93326 0.91500 1.45812 1.10566 1.22086 1.56880 1.17099 0.86360 0.81159 0.77749 1.90880 1.14610 1.78342 1.60506 1.19847 0.82289 0.99026 1.10465 1.20021 0.98575 0.91774 1.01765 1.19354 0.95954 0.90781 1.06734 1.84034 1.26966 1.35084 1.62425 1.25145 0.78121 1.01024 0.99484 1.21022 1.00279 0.94731 1.07419 1.19543 0.96736 0.90710 1.02749 1.41012 1.05595 1.19047 1.46550 0.72385 1.21584 0.96799 0.85806 0.93919 0.93923 0.93789 0.96046 0.93232 0.91848 0.90101 0.92988 0.91658 0.88687 0.75129 0.82848 0.72399 0.79702 0.99891 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 12.18 21.65 0.26 -56.66 16 2 C -0.07 -3.90 4.68 84.86 0.40 -3.51 16 3 Si 1.11 50.51 30.01 68.60 2.06 52.57 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.36 -19.85 9.17 84.03 0.77 -19.07 16 8 H 0.04 2.46 7.97 -2.91 -0.02 2.44 16 9 N -0.60 -29.85 2.01 -697.71 -1.40 -31.26 16 10 C 0.14 6.66 4.89 87.38 0.43 7.09 16 11 C -0.13 -4.82 5.74 29.39 0.17 -4.65 16 12 C -0.10 -2.96 5.16 28.61 0.15 -2.82 16 13 C -0.10 -2.98 5.07 29.76 0.15 -2.83 16 14 C 0.15 5.05 2.27 44.74 0.10 5.15 16 15 H 0.07 2.54 6.75 -2.38 -0.02 2.53 16 16 N -0.70 -18.69 4.98 -447.85 -2.23 -20.92 16 17 C 0.59 18.32 7.74 86.39 0.67 18.99 16 18 O -0.56 -22.90 16.53 -4.44 -0.07 -22.97 16 19 C 0.00 -0.10 7.03 40.19 0.28 0.19 16 20 C -0.09 -2.55 10.58 22.57 0.24 -2.31 16 21 C -0.08 -1.90 8.20 22.90 0.19 -1.71 16 22 O -0.19 -3.86 10.68 -11.46 -0.12 -3.99 16 23 C 0.03 0.32 12.02 66.96 0.80 1.13 16 24 C -0.21 -2.69 10.89 22.20 0.24 -2.44 16 25 C 0.02 0.34 8.11 39.32 0.32 0.66 16 26 N -0.52 -9.68 6.08 -176.19 -1.07 -10.75 16 27 H 0.43 5.06 8.16 -92.71 -0.76 4.30 16 28 C 0.15 6.44 5.86 86.61 0.51 6.94 16 29 H 0.25 16.06 7.39 -92.71 -0.69 15.38 16 30 H 0.04 2.42 5.28 -2.39 -0.01 2.41 16 31 H 0.02 1.00 8.06 -2.39 -0.02 0.98 16 32 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.05 1.54 7.35 -2.38 -0.02 1.53 16 36 H 0.06 2.14 7.49 -2.39 -0.02 2.12 16 37 H 0.09 1.95 7.94 -2.39 -0.02 1.93 16 38 H 0.41 7.53 7.63 -92.71 -0.71 6.82 16 39 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.26 -0.03 8.06 -2.91 -0.02 -0.05 16 41 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 42 H -0.02 -0.87 8.14 -2.39 -0.02 -0.88 16 43 H 0.05 2.05 7.86 -2.39 -0.02 2.03 16 Total: -1.00 -77.98 349.78 2.52 -75.46 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -0.32 Total: 17.71 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 5.41 Total: 0.80 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -4.44 Total: -119.59 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.20 Total: -26.96 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.06 Total: 52.57 kcal Total: -77.98 2.52 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034232522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.678 kcal (2) G-P(sol) polarization free energy of solvation -77.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds