Wall clock time and date at job start Tue Mar 31 2020 12:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.46130 * 2 1 4 4 C 1.34778 * 119.99649 * 60.02546 * 3 2 1 5 5 O 1.21724 * 120.00061 * 0.02562 * 4 3 2 6 6 C 1.46495 * 120.00011 * 180.02562 * 4 3 2 7 7 C 1.37777 * 125.86068 * 180.02562 * 6 4 3 8 8 C 1.39928 * 107.68887 * 180.02562 * 7 6 4 9 9 O 1.35123 * 145.14248 * 179.97438 * 8 7 6 10 10 C 1.34380 * 109.62662 * 180.02562 * 9 8 7 11 11 C 1.34466 * 109.44532 * 0.23881 * 10 9 8 12 12 C 1.39139 * 107.40538 * 359.97438 * 8 7 6 13 13 N 1.37113 * 108.10810 * 0.02562 * 12 8 7 14 14 H 0.96998 * 125.73935 * 179.97438 * 13 12 8 15 15 C 1.53039 * 109.45185 * 119.96792 * 2 1 3 16 16 C 1.53186 * 109.31495 * 181.37940 * 15 2 1 17 17 N 1.46932 * 108.77647 * 305.36473 * 16 15 2 18 18 C 1.36931 * 120.62865 * 233.63177 * 17 16 15 19 19 H 1.07990 * 120.00525 * 27.65913 * 18 17 16 20 20 C 1.38814 * 119.99839 * 207.65890 * 18 17 16 21 21 N 1.31618 * 119.99895 * 17.36904 * 20 18 17 22 22 Si 1.86803 * 120.00282 * 197.37438 * 20 18 17 23 23 H 1.48504 * 109.46710 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47103 * 119.99775 * 22 20 18 25 25 H 1.48499 * 109.47080 * 239.99871 * 22 20 18 26 26 C 1.46928 * 118.73411 * 53.60836 * 17 16 15 27 27 C 1.53041 * 109.45892 * 240.02918 * 2 1 3 28 28 H 1.09007 * 109.47670 * 59.99975 * 1 2 3 29 29 H 1.09001 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47168 * 299.99784 * 1 2 3 31 31 H 0.96993 * 120.00091 * 240.03208 * 3 2 1 32 32 H 1.07997 * 126.15420 * 0.04220 * 7 6 4 33 33 H 1.08000 * 125.28137 * 179.97438 * 10 9 8 34 34 H 1.07999 * 126.41182 * 179.74970 * 11 10 9 35 35 H 1.09000 * 109.49617 * 301.33243 * 15 2 1 36 36 H 1.09000 * 109.49898 * 61.42491 * 15 2 1 37 37 H 1.09000 * 109.59246 * 185.57885 * 16 15 2 38 38 H 1.09003 * 109.70383 * 65.22201 * 16 15 2 39 39 H 0.97001 * 120.00190 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.58028 * 186.60734 * 26 17 16 41 41 H 1.08994 * 109.70549 * 66.25108 * 26 17 16 42 42 H 1.08994 * 109.49602 * 298.57795 * 27 2 1 43 43 H 1.09003 * 109.49628 * 58.64390 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6927 2.2110 1.0111 5 8 0.9937 1.8124 1.9245 6 6 2.1802 3.5924 1.0109 7 6 1.9235 4.5391 1.9784 8 6 2.5708 5.7204 1.5998 9 8 2.8184 7.0057 1.9355 10 6 3.5922 7.5763 0.9966 11 6 3.8592 6.6796 0.0309 12 6 3.2194 5.4716 0.3943 13 7 2.9763 4.1694 0.0404 14 1 3.3073 3.7278 -0.7573 15 6 2.0396 -0.7208 1.2501 16 6 3.5710 -0.6889 1.2644 17 7 4.0676 -1.2493 0.0002 18 6 4.9752 -2.2746 0.0004 19 1 5.0079 -2.9668 0.8286 20 6 5.8534 -2.4242 -1.0642 21 7 6.0601 -1.4225 -1.8926 22 14 6.7419 -4.0472 -1.3212 23 1 6.3394 -5.0052 -0.2602 24 1 6.3843 -4.6021 -2.6514 25 1 8.2086 -3.8244 -1.2558 26 6 3.5713 -0.6889 -1.2641 27 6 2.0397 -0.7209 -1.2500 28 1 -0.3635 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5752 1.6988 -0.7277 32 1 1.3297 4.3952 2.8690 33 1 3.9415 8.5981 1.0128 34 1 4.4532 6.8492 -0.8550 35 1 1.6569 -0.2207 2.1398 36 1 1.6973 -1.7556 1.2384 37 1 3.9412 -1.2849 2.0986 38 1 3.9162 0.3397 1.3688 39 1 6.6741 -1.5269 -2.6363 40 1 3.9416 -1.2849 -2.0982 41 1 3.9144 0.3403 -1.3697 42 1 1.6975 -1.7556 -1.2383 43 1 1.6568 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045454431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:23 Heat of formation + Delta-G solvation = 51.556028 kcal Electronic energy + Delta-G solvation = -27110.534588 eV Core-core repulsion = 23352.310162 eV Total energy + Delta-G solvation = -3758.224426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.98270 -40.43827 -39.06479 -37.23587 -34.50770 -32.51654 -32.15496 -31.03680 -30.48227 -29.99918 -28.19319 -27.47103 -24.27400 -23.76375 -22.35806 -21.72518 -21.11486 -20.73442 -20.05800 -18.76326 -18.45745 -17.21370 -16.85101 -16.32350 -15.67792 -15.04536 -14.92652 -14.88147 -14.47775 -13.94454 -13.67266 -13.61058 -13.48475 -13.43441 -13.13610 -13.04877 -12.90452 -12.43386 -11.88840 -11.82014 -11.70162 -11.37256 -11.26725 -10.99149 -10.77781 -10.42476 -10.34017 -10.15858 -9.99406 -9.92062 -9.70634 -9.30674 -8.79083 -8.67279 -8.52678 -7.92367 -6.72781 -5.85775 -3.26447 0.96772 2.18793 2.42747 2.60452 2.84559 3.33019 3.38083 3.41708 3.44070 3.46274 4.45446 4.48325 4.67984 4.91069 5.18204 5.21923 5.30348 5.34979 5.41173 5.44238 5.49192 5.55639 5.72074 5.93100 5.99683 6.01253 6.13054 6.19581 6.22969 6.26849 6.36806 6.44808 6.49056 6.64136 6.67211 6.78096 6.88942 6.98728 7.06360 7.20497 7.23431 7.49254 7.71412 7.76264 8.32384 8.38807 9.15512 9.78938 10.35515 11.23093 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003651 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.365271 B = 7667.486534 C = 8741.111087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.185 3.815 3 N -0.705 5.705 4 C 0.590 3.410 5 O -0.523 6.523 6 C 0.016 3.984 7 C -0.086 4.086 8 C -0.040 4.040 9 O -0.170 6.170 10 C 0.006 3.994 11 C -0.200 4.200 12 C 0.009 3.991 13 N -0.529 5.529 14 H 0.422 0.578 15 C -0.143 4.143 16 C 0.149 3.851 17 N -0.591 5.591 18 C -0.249 4.249 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.906 5.906 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.172 3.828 27 C -0.147 4.147 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.395 0.605 32 H 0.160 0.840 33 H 0.211 0.789 34 H 0.153 0.847 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.014 0.986 39 H 0.252 0.748 40 H 0.090 0.910 41 H 0.012 0.988 42 H 0.074 0.926 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 14.375 1.121 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 N -0.356 5.356 4 C 0.376 3.624 5 O -0.400 6.400 6 C -0.097 4.097 7 C -0.114 4.114 8 C -0.092 4.092 9 O -0.068 6.068 10 C -0.062 4.062 11 C -0.222 4.222 12 C -0.105 4.105 13 N -0.133 5.133 14 H 0.260 0.740 15 C -0.183 4.183 16 C 0.023 3.977 17 N -0.313 5.313 18 C -0.378 4.378 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.551 5.551 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.046 3.954 27 C -0.186 4.186 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.229 0.771 32 H 0.177 0.823 33 H 0.227 0.773 34 H 0.171 0.829 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.030 0.970 42 H 0.093 0.907 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.455 14.062 1.787 16.505 hybrid contribution 1.265 -0.739 -1.299 1.958 sum -7.190 13.323 0.488 15.147 Atomic orbital electron populations 1.22237 0.95076 1.02131 1.02482 1.20343 0.92803 0.79349 0.97503 1.46054 1.52679 1.12573 1.24246 1.16774 0.80410 0.82502 0.82731 1.90791 1.38112 1.75425 1.35655 1.20493 1.02512 0.94638 0.92087 1.19850 1.04205 0.86474 1.00868 1.19292 1.07232 0.85516 0.97170 1.84010 1.57717 1.21055 1.43998 1.24003 0.95574 0.99020 0.87599 1.20577 1.07953 0.90159 1.03467 1.19018 1.05805 0.87327 0.98321 1.41230 1.42286 1.08324 1.21462 0.73960 1.22407 0.98948 0.99809 0.97141 1.20847 0.90885 0.96117 0.89846 1.44052 1.48250 1.39664 0.99382 1.19261 1.09651 1.02855 1.06074 0.91588 1.25007 0.97222 0.97507 0.99950 1.70020 1.37928 1.29040 1.18080 0.86232 0.79141 0.83713 0.77769 1.20225 1.21573 1.21772 1.20727 0.86844 0.96867 0.90960 1.22543 1.01411 1.00215 0.94448 0.93285 0.91983 0.90727 0.77061 0.82289 0.77286 0.82927 0.90671 0.91563 0.92958 0.96793 0.93764 0.89142 0.97037 0.90720 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.40 37.15 0.31 -2.03 16 2 C 0.18 3.00 0.66 -131.78 -0.09 2.92 16 3 N -0.71 -10.67 4.10 -48.91 -0.20 -10.88 16 4 C 0.59 9.28 7.20 -12.93 -0.09 9.19 16 5 O -0.52 -9.34 13.08 5.17 0.07 -9.28 16 6 C 0.02 0.22 7.03 -81.86 -0.58 -0.35 16 7 C -0.09 -1.22 10.58 -39.12 -0.41 -1.64 16 8 C -0.04 -0.56 8.20 -38.61 -0.32 -0.88 16 9 O -0.17 -2.10 10.68 3.19 0.03 -2.07 16 10 C 0.01 0.05 12.02 29.40 0.35 0.40 16 11 C -0.20 -2.02 10.89 -39.70 -0.43 -2.45 16 12 C 0.01 0.11 8.11 -83.95 -0.68 -0.57 16 13 N -0.53 -6.66 6.08 -7.04 -0.04 -6.70 16 14 H 0.42 4.44 8.16 -40.82 -0.33 4.11 16 15 C -0.14 -2.61 4.67 -26.61 -0.12 -2.73 16 16 C 0.15 3.18 6.25 -3.71 -0.02 3.15 16 17 N -0.59 -14.21 2.99 -172.32 -0.52 -14.73 16 18 C -0.25 -6.68 9.59 -15.06 -0.14 -6.82 16 19 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 20 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 21 N -0.91 -25.25 11.19 55.49 0.62 -24.63 16 22 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.17 3.75 5.04 -3.71 -0.02 3.73 16 27 C -0.15 -2.53 4.96 -26.61 -0.13 -2.66 16 28 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.17 6.16 -51.93 -0.32 0.85 16 31 H 0.39 5.51 6.36 -40.82 -0.26 5.26 16 32 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.21 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.07 1.39 6.19 -51.93 -0.32 1.07 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 38 H 0.01 0.31 7.74 -51.93 -0.40 -0.09 16 39 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 40 H 0.09 2.26 6.03 -51.93 -0.31 1.94 16 41 H 0.01 0.26 6.94 -51.93 -0.36 -0.10 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -31.53 344.11 -8.00 -39.53 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.65 Total: 8.10 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.46 Total: -0.78 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.14 Total: -56.93 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.10 Total: -11.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.53 -8.00 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045454431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.085 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds