Wall clock time and date at job start Tue Mar 31 2020 11:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 110.89183 * 2 1 4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1 5 5 O 1.21553 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.47860 * 120.00160 * 179.97438 * 4 3 2 7 7 C 1.39708 * 120.07211 * 359.97438 * 6 4 3 8 8 C 1.38055 * 120.14658 * 179.97438 * 7 6 4 9 9 C 1.38101 * 120.29576 * 0.02562 * 8 7 6 10 10 C 1.39678 * 120.14319 * 359.97438 * 9 8 7 11 11 C 1.47857 * 120.07125 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99935 * 0.02562 * 11 10 9 13 13 O 1.21553 * 119.99938 * 179.97438 * 11 10 9 14 14 C 1.39289 * 120.07279 * 179.72422 * 6 4 3 15 15 C 1.55157 * 111.00515 * 123.92556 * 2 1 3 16 16 C 1.54334 * 103.02095 * 153.37497 * 15 2 1 17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 2 18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15 19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16 20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15 27 27 H 1.09002 * 109.47666 * 182.43089 * 1 2 3 28 28 H 1.09008 * 109.47143 * 302.42655 * 1 2 3 29 29 H 1.08999 * 109.47170 * 62.42125 * 1 2 3 30 30 H 0.96991 * 120.00253 * 117.57206 * 3 2 1 31 31 H 1.08004 * 119.92650 * 359.96243 * 7 6 4 32 32 H 1.07996 * 119.85300 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.92963 * 180.02562 * 9 8 7 34 34 H 0.97000 * 119.99878 * 359.97438 * 12 11 10 35 35 H 0.97000 * 119.99812 * 179.97438 * 12 11 10 36 36 H 1.07998 * 120.15184 * 0.02562 * 14 6 4 37 37 H 1.08998 * 110.71770 * 271.93665 * 15 2 1 38 38 H 1.09002 * 110.71853 * 35.03099 * 15 2 1 39 39 H 1.08998 * 109.99457 * 218.65928 * 16 15 2 40 40 H 1.09007 * 109.77698 * 97.49747 * 16 15 2 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09003 * 110.36579 * 143.19056 * 26 17 16 43 43 H 1.08993 * 110.36917 * 265.41008 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 -1.0347 5 8 1.1162 1.7966 -1.9679 6 6 2.3146 3.5725 -1.0345 7 6 3.0862 4.0274 0.0377 8 6 3.5793 5.3169 0.0392 9 6 3.3134 6.1656 -1.0172 10 6 2.5432 5.7236 -2.0955 11 6 2.2590 6.6339 -3.2254 12 7 2.7437 7.8915 -3.2160 13 8 1.5891 6.2477 -4.1633 14 6 2.0470 4.4217 -2.1057 15 6 2.0861 -0.8084 1.2019 16 6 3.4656 -1.2798 0.6953 17 7 3.4270 -1.2429 -0.7738 18 6 4.4639 -1.5663 -1.6079 19 1 4.3330 -1.5113 -2.6785 20 6 5.6830 -1.9647 -1.0772 21 7 5.8424 -2.0322 0.2276 22 14 7.0972 -2.4066 -2.2150 23 1 8.2802 -2.7959 -1.4061 24 1 6.6966 -3.5413 -3.0850 25 1 7.4393 -1.2330 -3.0582 26 6 2.0851 -0.8063 -1.2007 27 1 -0.3634 -1.0267 0.0436 28 1 -0.3634 0.5511 0.8675 29 1 -0.3633 0.4758 -0.9109 30 1 2.5885 1.6831 0.7446 31 1 3.2973 3.3688 0.8672 32 1 4.1749 5.6637 0.8706 33 1 3.7024 7.1731 -1.0101 34 1 3.2786 8.1995 -2.4678 35 1 2.5575 8.4885 -3.9575 36 1 1.4540 4.0739 -2.9386 37 1 2.1921 -0.1708 2.0795 38 1 1.4450 -1.6619 1.4223 39 1 3.6600 -2.2969 1.0357 40 1 4.2424 -0.6090 1.0627 41 1 6.6943 -2.3110 0.5983 42 1 2.1559 -0.1713 -2.0838 43 1 1.4523 -1.6699 -1.4050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046424460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:52 Heat of formation + Delta-G solvation = -16.687295 kcal Electronic energy + Delta-G solvation = -26588.876248 eV Core-core repulsion = 22827.692569 eV Total energy + Delta-G solvation = -3761.183679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56749 -39.70363 -38.22956 -37.02136 -34.15128 -33.99083 -32.31164 -31.23796 -31.00091 -29.74855 -28.64835 -25.65858 -24.52707 -24.17271 -23.33168 -21.43833 -20.54995 -20.09738 -19.01863 -18.64788 -17.35998 -16.81994 -16.49480 -16.19672 -15.59583 -15.03775 -14.79108 -14.66853 -14.59987 -14.50074 -13.95125 -13.77360 -13.71695 -13.23245 -12.81578 -12.63040 -12.22612 -12.01361 -11.89580 -11.76796 -11.64269 -11.51477 -10.88325 -10.85120 -10.41820 -10.35919 -10.32898 -10.09153 -10.01914 -9.99288 -9.63157 -9.35308 -9.25537 -9.20660 -8.63584 -8.52122 -6.77577 -5.68577 -3.00100 0.46425 0.92877 2.46379 3.12671 3.17099 3.43198 3.45599 3.47040 3.48997 3.85675 4.43547 4.49366 4.53603 4.61144 4.87432 4.96543 5.11074 5.18999 5.37338 5.42820 5.49754 5.62731 5.68233 5.73284 5.96345 5.99747 6.05268 6.10924 6.14397 6.17416 6.36034 6.39809 6.43378 6.52922 6.57687 6.69032 6.86275 7.00304 7.13730 7.56252 7.57145 7.81392 7.86980 7.96724 8.28574 8.53525 9.26336 9.86235 10.52161 11.43472 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003804 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.063735 B = 7358.865631 C = 8329.513756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.695 5.695 4 C 0.559 3.441 5 O -0.530 6.530 6 C -0.130 4.130 7 C -0.056 4.056 8 C -0.133 4.133 9 C -0.068 4.068 10 C -0.152 4.152 11 C 0.565 3.435 12 N -0.853 5.853 13 O -0.534 6.534 14 C -0.001 4.001 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.926 5.926 22 Si 0.910 3.090 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.130 3.870 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.396 0.604 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.400 0.600 35 H 0.405 0.595 36 H 0.150 0.850 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.251 0.749 42 H 0.057 0.943 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 18.882 4.624 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.345 5.345 4 C 0.346 3.654 5 O -0.408 6.408 6 C -0.133 4.133 7 C -0.075 4.075 8 C -0.151 4.151 9 C -0.087 4.087 10 C -0.155 4.155 11 C 0.351 3.649 12 N -0.417 5.417 13 O -0.410 6.410 14 C -0.021 4.021 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.574 5.574 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.213 1.213 26 C 0.003 3.997 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.231 0.769 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.230 0.770 35 H 0.236 0.764 36 H 0.168 0.832 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.818 18.064 3.462 19.616 hybrid contribution 1.509 0.323 0.005 1.543 sum -5.309 18.387 3.467 19.449 Atomic orbital electron populations 1.21994 0.94257 1.02084 1.02439 1.21511 0.92589 0.80494 0.98421 1.45704 1.53866 1.12772 1.22145 1.18012 0.80357 0.84498 0.82578 1.90747 1.39199 1.76209 1.34660 1.20096 1.01832 0.95113 0.96262 1.21622 0.93125 0.95838 0.96959 1.21040 1.01213 0.93702 0.99139 1.21412 0.95177 0.99485 0.92636 1.19791 1.04056 0.95398 0.96247 1.18234 0.78722 0.81904 0.85996 1.43730 1.57092 1.14221 1.26674 1.90854 1.38637 1.75670 1.35887 1.21396 0.93417 0.90492 0.96769 1.23238 1.00591 0.98900 0.95790 1.21148 0.89931 0.99849 0.83765 1.44434 1.07830 1.78858 1.01770 1.19033 0.89363 1.37517 0.89014 0.90636 1.24741 0.97691 1.02052 0.95998 1.69937 1.24171 1.54144 1.09155 0.86218 0.81868 0.78323 0.79517 1.21647 1.21190 1.21287 1.21902 0.87536 0.94934 0.95284 0.91756 0.93102 0.90985 0.76880 0.84839 0.84615 0.85366 0.77040 0.76400 0.83214 0.91813 0.90808 0.93858 0.93665 0.93877 0.92514 0.95635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.58 37.15 0.32 -1.96 16 2 C 0.16 2.76 0.82 -129.67 -0.11 2.66 16 3 N -0.69 -11.29 5.13 -46.55 -0.24 -11.53 16 4 C 0.56 9.66 7.16 -12.32 -0.09 9.57 16 5 O -0.53 -10.80 13.14 5.32 0.07 -10.73 16 6 C -0.13 -1.85 5.87 -105.02 -0.62 -2.47 16 7 C -0.06 -0.62 9.54 -39.10 -0.37 -0.99 16 8 C -0.13 -1.14 10.02 -39.70 -0.40 -1.54 16 9 C -0.07 -0.56 9.54 -39.09 -0.37 -0.94 16 10 C -0.15 -1.76 5.87 -105.01 -0.62 -2.37 16 11 C 0.57 6.65 8.05 -12.32 -0.10 6.55 16 12 N -0.85 -5.67 8.82 30.53 0.27 -5.40 16 13 O -0.53 -8.68 17.18 5.32 0.09 -8.58 16 14 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 15 C -0.15 -2.55 5.99 -24.89 -0.15 -2.70 16 16 C 0.18 4.16 5.37 -3.06 -0.02 4.14 16 17 N -0.60 -15.51 3.39 -170.06 -0.58 -16.09 16 18 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 21 N -0.93 -26.89 10.31 55.49 0.57 -26.32 16 22 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.13 2.90 6.10 -2.52 -0.02 2.88 16 27 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 28 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.07 1.21 6.53 -51.93 -0.34 0.87 16 30 H 0.40 5.50 6.52 -40.82 -0.27 5.24 16 31 H 0.13 1.25 6.39 -52.48 -0.34 0.91 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.54 6.39 -52.49 -0.34 0.21 16 34 H 0.40 1.38 6.85 -40.82 -0.28 1.10 16 35 H 0.40 2.17 8.93 -40.82 -0.36 1.81 16 36 H 0.15 2.46 7.23 -52.49 -0.38 2.08 16 37 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 38 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 39 H 0.04 1.13 7.52 -51.93 -0.39 0.74 16 40 H 0.05 1.15 7.37 -51.93 -0.38 0.76 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.38 6.31 -51.93 -0.33 1.05 16 43 H 0.03 0.57 8.04 -51.93 -0.42 0.16 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -36.27 351.24 -8.14 -44.41 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.46 Total: 5.81 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -3.14 Total: 5.64 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.03 Total: -59.34 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.16 Total: -19.31 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.27 -8.14 -44.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046424460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.723 kcal (2) G-P(sol) polarization free energy of solvation -36.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds