Wall clock time and date at job start Tue Mar 31 2020 11:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 110.89183 * 2 1 4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1 5 5 O 1.21553 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.47860 * 120.00160 * 179.97438 * 4 3 2 7 7 C 1.39708 * 120.07211 * 359.97438 * 6 4 3 8 8 C 1.38055 * 120.14658 * 179.97438 * 7 6 4 9 9 C 1.38101 * 120.29576 * 0.02562 * 8 7 6 10 10 C 1.39678 * 120.14319 * 359.97438 * 9 8 7 11 11 C 1.47857 * 120.07125 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99935 * 0.02562 * 11 10 9 13 13 O 1.21553 * 119.99938 * 179.97438 * 11 10 9 14 14 C 1.39289 * 120.07279 * 179.72422 * 6 4 3 15 15 C 1.55157 * 111.00515 * 123.92556 * 2 1 3 16 16 C 1.54334 * 103.02095 * 153.37497 * 15 2 1 17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 2 18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15 19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16 20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15 27 27 H 1.09002 * 109.47666 * 182.43089 * 1 2 3 28 28 H 1.09008 * 109.47143 * 302.42655 * 1 2 3 29 29 H 1.08999 * 109.47170 * 62.42125 * 1 2 3 30 30 H 0.96991 * 120.00253 * 117.57206 * 3 2 1 31 31 H 1.08004 * 119.92650 * 359.96243 * 7 6 4 32 32 H 1.07996 * 119.85300 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.92963 * 180.02562 * 9 8 7 34 34 H 0.97000 * 119.99878 * 359.97438 * 12 11 10 35 35 H 0.97000 * 119.99812 * 179.97438 * 12 11 10 36 36 H 1.07998 * 120.15184 * 0.02562 * 14 6 4 37 37 H 1.08998 * 110.71770 * 271.93665 * 15 2 1 38 38 H 1.09002 * 110.71853 * 35.03099 * 15 2 1 39 39 H 1.08998 * 109.99457 * 218.65928 * 16 15 2 40 40 H 1.09007 * 109.77698 * 97.49747 * 16 15 2 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09003 * 110.36579 * 143.19056 * 26 17 16 43 43 H 1.08993 * 110.36917 * 265.41008 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 -1.0347 5 8 1.1162 1.7966 -1.9679 6 6 2.3146 3.5725 -1.0345 7 6 3.0862 4.0274 0.0377 8 6 3.5793 5.3169 0.0392 9 6 3.3134 6.1656 -1.0172 10 6 2.5432 5.7236 -2.0955 11 6 2.2590 6.6339 -3.2254 12 7 2.7437 7.8915 -3.2160 13 8 1.5891 6.2477 -4.1633 14 6 2.0470 4.4217 -2.1057 15 6 2.0861 -0.8084 1.2019 16 6 3.4656 -1.2798 0.6953 17 7 3.4270 -1.2429 -0.7738 18 6 4.4639 -1.5663 -1.6079 19 1 4.3330 -1.5113 -2.6785 20 6 5.6830 -1.9647 -1.0772 21 7 5.8424 -2.0322 0.2276 22 14 7.0972 -2.4066 -2.2150 23 1 8.2802 -2.7959 -1.4061 24 1 6.6966 -3.5413 -3.0850 25 1 7.4393 -1.2330 -3.0582 26 6 2.0851 -0.8063 -1.2007 27 1 -0.3634 -1.0267 0.0436 28 1 -0.3634 0.5511 0.8675 29 1 -0.3633 0.4758 -0.9109 30 1 2.5885 1.6831 0.7446 31 1 3.2973 3.3688 0.8672 32 1 4.1749 5.6637 0.8706 33 1 3.7024 7.1731 -1.0101 34 1 3.2786 8.1995 -2.4678 35 1 2.5575 8.4885 -3.9575 36 1 1.4540 4.0739 -2.9386 37 1 2.1921 -0.1708 2.0795 38 1 1.4450 -1.6619 1.4223 39 1 3.6600 -2.2969 1.0357 40 1 4.2424 -0.6090 1.0627 41 1 6.6943 -2.3110 0.5983 42 1 2.1559 -0.1713 -2.0838 43 1 1.4523 -1.6699 -1.4050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046424460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:51 Heat of formation + Delta-G solvation = -45.302233 kcal Electronic energy + Delta-G solvation = -26590.117084 eV Core-core repulsion = 22827.692569 eV Total energy + Delta-G solvation = -3762.424516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67454 -40.86454 -39.38642 -38.43306 -35.73902 -34.99430 -33.87090 -32.40651 -32.10741 -31.20561 -30.28435 -27.52907 -25.70375 -25.32376 -24.74531 -22.47885 -22.09349 -21.43678 -20.42289 -19.64812 -18.87936 -18.04493 -17.59922 -17.17291 -16.97622 -16.66896 -16.19067 -15.91002 -15.83660 -15.58356 -15.49565 -15.07668 -14.79753 -14.68008 -14.20506 -13.89312 -13.64655 -13.55524 -13.32320 -13.11880 -12.92077 -12.82567 -12.75895 -12.46895 -12.14331 -12.05886 -11.99082 -11.70769 -11.55723 -11.31064 -10.80048 -10.76021 -10.70683 -10.20518 -10.09401 -9.93860 -8.86566 -7.86391 -5.19823 -0.39817 -0.01758 1.42706 1.45076 1.51724 1.54358 2.02614 2.13994 2.47588 2.48295 2.85952 3.31221 3.49590 3.65369 3.71843 3.76684 3.81970 4.04342 4.04868 4.10378 4.18583 4.35156 4.57377 4.65055 4.68555 4.78064 4.85979 4.87585 4.92932 5.02577 5.07596 5.13414 5.21153 5.25143 5.35623 5.41535 5.62375 5.67774 5.71964 5.77583 5.83462 6.20018 6.37085 6.58884 7.11942 7.23760 7.25048 7.76835 8.41205 9.22999 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003804 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.063735 B = 7358.865631 C = 8329.513756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.689 5.689 4 C 0.552 3.448 5 O -0.574 6.574 6 C -0.155 4.155 7 C -0.056 4.056 8 C -0.120 4.120 9 C -0.044 4.044 10 C -0.161 4.161 11 C 0.561 3.439 12 N -0.822 5.822 13 O -0.593 6.593 14 C -0.028 4.028 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.063 0.937 20 C -0.054 4.054 21 N -0.942 5.942 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.282 1.282 25 H -0.283 1.283 26 C 0.126 3.874 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.409 0.591 31 H 0.151 0.849 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.420 0.580 35 H 0.414 0.586 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.009 0.991 40 H 0.022 0.978 41 H 0.249 0.751 42 H 0.027 0.973 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 21.584 7.213 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 N -0.340 5.340 4 C 0.341 3.659 5 O -0.455 6.455 6 C -0.158 4.158 7 C -0.074 4.074 8 C -0.138 4.138 9 C -0.062 4.062 10 C -0.165 4.165 11 C 0.347 3.653 12 N -0.387 5.387 13 O -0.474 6.474 14 C -0.048 4.048 15 C -0.165 4.165 16 C 0.060 3.940 17 N -0.346 5.346 18 C -0.376 4.376 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.591 5.591 22 Si 0.800 3.200 23 H -0.211 1.211 24 H -0.208 1.208 25 H -0.209 1.209 26 C 0.000 4.000 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.247 0.753 31 H 0.169 0.831 32 H 0.199 0.801 33 H 0.198 0.802 34 H 0.253 0.747 35 H 0.247 0.753 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.027 0.973 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.625 20.828 6.101 22.420 hybrid contribution 1.194 -0.438 -0.822 1.514 sum -4.431 20.390 5.279 21.524 Atomic orbital electron populations 1.21919 0.91977 1.03207 1.02731 1.21378 0.94094 0.80702 0.95933 1.45632 1.53896 1.12015 1.22466 1.18589 0.79613 0.85811 0.81909 1.90717 1.41234 1.77357 1.36231 1.19888 1.04345 0.93508 0.98077 1.21900 0.92027 0.97506 0.96008 1.21574 0.99969 0.92161 1.00071 1.21958 0.92301 1.01547 0.90426 1.19862 1.04864 0.94157 0.97590 1.18397 0.78331 0.83188 0.85345 1.43474 1.55485 1.12324 1.27456 1.90830 1.41553 1.77042 1.38007 1.21206 0.94837 0.92507 0.96285 1.23117 0.96852 1.00019 0.96520 1.20968 0.93018 0.97526 0.82452 1.44668 1.08367 1.78829 1.02777 1.19257 0.90874 1.38237 0.89187 0.91877 1.25458 0.99682 1.02073 0.97521 1.70121 1.24375 1.54312 1.10261 0.85269 0.78932 0.77984 0.77828 1.21052 1.20823 1.20949 1.21990 0.86476 0.95001 0.96523 0.90459 0.90166 0.93059 0.75342 0.83142 0.80124 0.80229 0.74676 0.75298 0.87183 0.87919 0.88933 0.97273 0.96002 0.94180 0.95507 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.58 71.98 0.62 -3.51 16 2 C 0.17 5.80 0.82 5.00 0.00 5.81 16 3 N -0.69 -22.26 5.13 -419.45 -2.15 -24.41 16 4 C 0.55 19.93 7.16 86.79 0.62 20.55 16 5 O -0.57 -25.33 13.14 -3.88 -0.05 -25.38 16 6 C -0.16 -4.52 5.87 -20.12 -0.12 -4.64 16 7 C -0.06 -1.09 9.54 22.58 0.22 -0.87 16 8 C -0.12 -1.48 10.02 22.19 0.22 -1.25 16 9 C -0.04 -0.53 9.54 22.59 0.22 -0.32 16 10 C -0.16 -3.59 5.87 -20.12 -0.12 -3.71 16 11 C 0.56 12.96 8.05 86.79 0.70 13.65 16 12 N -0.82 -8.73 8.82 -175.59 -1.55 -10.28 16 13 O -0.59 -20.39 17.18 -3.88 -0.07 -20.46 16 14 C -0.03 -0.86 9.14 22.79 0.21 -0.65 16 15 C -0.13 -4.18 5.99 31.79 0.19 -3.99 16 16 C 0.18 8.75 5.37 86.73 0.47 9.21 16 17 N -0.62 -33.01 3.39 -691.96 -2.35 -35.36 16 18 C -0.25 -14.60 10.28 84.03 0.86 -13.73 16 19 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.05 -3.10 5.49 84.86 0.47 -2.64 16 21 N -0.94 -55.58 10.31 21.65 0.22 -55.36 16 22 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 26 C 0.13 5.85 6.10 86.86 0.53 6.38 16 27 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.05 1.75 6.53 -2.39 -0.02 1.74 16 30 H 0.41 10.74 6.52 -92.71 -0.60 10.13 16 31 H 0.15 2.35 6.39 -2.91 -0.02 2.33 16 32 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.18 0.28 6.39 -2.91 -0.02 0.26 16 34 H 0.42 0.95 6.85 -92.71 -0.64 0.32 16 35 H 0.41 3.48 8.93 -92.71 -0.83 2.65 16 36 H 0.11 4.16 7.23 -2.91 -0.02 4.14 16 37 H 0.10 2.64 8.05 -2.39 -0.02 2.62 16 38 H 0.09 2.77 8.01 -2.39 -0.02 2.75 16 39 H 0.01 0.49 7.52 -2.39 -0.02 0.47 16 40 H 0.02 1.12 7.37 -2.38 -0.02 1.10 16 41 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.03 1.39 6.31 -2.39 -0.02 1.37 16 43 H 0.02 1.06 8.04 -2.39 -0.02 1.04 16 Total: -1.00 -87.53 351.24 0.18 -87.35 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -0.98 Total: 14.61 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 5.08 Total: 20.28 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.83 Total: -125.41 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.12 Total: -45.83 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -87.53 0.18 -87.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046424460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.049 kcal (2) G-P(sol) polarization free energy of solvation -87.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds