Wall clock time and date at job start Tue Mar 31 2020 11:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21528 * 120.00110 * 359.97438 * 4 3 2 6 6 C 1.48032 * 119.99987 * 179.97438 * 4 3 2 7 7 C 1.39558 * 119.99807 * 359.72929 * 6 4 3 8 8 C 1.37823 * 120.00051 * 179.76613 * 7 6 4 9 9 C 1.39555 * 119.99795 * 0.50534 * 8 7 6 10 10 C 1.48032 * 120.00176 * 179.76616 * 9 8 7 11 11 N 1.34778 * 119.99717 * 359.97438 * 10 9 8 12 12 O 1.21533 * 120.00249 * 179.97438 * 10 9 8 13 13 C 1.39556 * 120.00044 * 359.74863 * 9 8 7 14 14 C 1.37824 * 120.00131 * 359.97438 * 13 9 8 15 15 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 16 16 C 1.54325 * 102.94184 * 206.42607 * 15 2 1 17 17 N 1.47022 * 107.26948 * 22.19107 * 16 15 2 18 18 C 1.36945 * 125.64832 * 181.02381 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47423 * 108.70390 * 1.29074 * 17 16 15 27 27 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 28 28 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 29 29 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 30 30 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 31 31 H 1.08000 * 120.00426 * 359.97438 * 7 6 4 32 32 H 1.07995 * 120.00369 * 180.25054 * 8 7 6 33 33 H 0.96994 * 120.00173 * 359.97438 * 11 10 9 34 34 H 0.97000 * 119.99530 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.00127 * 180.02562 * 13 9 8 36 36 H 1.07994 * 120.00335 * 179.97438 * 14 13 9 37 37 H 1.09000 * 110.72140 * 88.06437 * 15 2 1 38 38 H 1.08998 * 110.72520 * 324.78756 * 15 2 1 39 39 H 1.09002 * 109.88274 * 262.77538 * 16 15 2 40 40 H 1.08996 * 109.88444 * 141.60894 * 16 15 2 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09000 * 110.37068 * 94.48354 * 26 17 16 43 43 H 1.09005 * 110.36651 * 216.80519 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9198 1.8724 1.8420 6 6 2.2144 3.6129 0.9691 7 6 3.0981 4.0222 -0.0305 8 6 3.5868 5.3109 -0.0330 9 6 3.2062 6.2033 0.9701 10 6 3.7351 7.5859 0.9705 11 7 4.5847 7.9826 0.0023 12 8 3.4033 8.3633 1.8438 13 6 2.3267 5.7925 1.9727 14 6 1.8335 4.5055 1.9720 15 6 2.0861 -0.8079 -1.2023 16 6 3.4674 -1.2742 -0.6961 17 7 3.4270 -1.2431 0.7733 18 6 4.4640 -1.5668 1.6072 19 1 4.3332 -1.5120 2.6778 20 6 5.6830 -1.9654 1.0763 21 7 5.8425 -2.0318 -0.2285 22 14 7.0977 -2.4063 2.2138 23 1 8.2800 -2.7972 1.4048 24 1 7.4398 -1.2322 3.0562 25 1 6.6975 -3.5406 3.0847 26 6 2.0835 -0.8120 1.2003 27 1 -0.3634 -1.0252 0.0699 28 1 -0.3633 0.5732 0.8529 29 1 -0.3634 0.4521 -0.9229 30 1 2.6639 1.6542 -0.6973 31 1 3.3964 3.3301 -0.8041 32 1 4.2674 5.6288 -0.8088 33 1 4.8498 7.3621 -0.6945 34 1 4.9309 8.8887 0.0023 35 1 2.0318 6.4833 2.7488 36 1 1.1532 4.1874 2.7481 37 1 2.1922 -0.1699 -2.0797 38 1 1.4467 -1.6632 -1.4210 39 1 4.2426 -0.5999 -1.0600 40 1 3.6649 -2.2894 -1.0401 41 1 6.6945 -2.3100 -0.5994 42 1 1.4523 -1.6782 1.3988 43 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046828484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:54 Heat of formation + Delta-G solvation = -17.202554 kcal Electronic energy + Delta-G solvation = -26430.955690 eV Core-core repulsion = 22669.749668 eV Total energy + Delta-G solvation = -3761.206022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59819 -39.80891 -38.26594 -37.06620 -34.19247 -34.04101 -32.41855 -31.15802 -31.03603 -29.80713 -28.69996 -25.70964 -25.21861 -23.67429 -22.79800 -21.79345 -20.54672 -20.16900 -19.08777 -18.65178 -17.69956 -17.10039 -16.67353 -15.73605 -15.31590 -15.08497 -15.06840 -14.72853 -14.63041 -14.45333 -13.90924 -13.76753 -13.75215 -13.32592 -12.91257 -12.65075 -12.49270 -12.02866 -11.95900 -11.83128 -11.68501 -11.34045 -10.92133 -10.88403 -10.46722 -10.40964 -10.38260 -10.13408 -10.07305 -10.05284 -9.68125 -9.39626 -9.26749 -9.21019 -8.70701 -8.55760 -6.82546 -5.72843 -3.04799 0.29298 1.11612 2.34143 3.13244 3.14271 3.34377 3.40348 3.44388 3.45782 3.80764 4.40171 4.47477 4.49581 4.65393 4.80014 5.06583 5.09765 5.17109 5.35074 5.44243 5.44702 5.59050 5.68789 5.70591 5.91099 5.98431 6.02245 6.08795 6.12567 6.16969 6.32790 6.36639 6.40445 6.49755 6.55061 6.65527 6.77193 6.95461 7.06485 7.51249 7.52937 7.76741 7.81433 7.89236 8.23937 8.44897 9.21683 9.81583 10.47266 11.39084 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.003696 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.453310 B = 7574.458853 C = 8846.515477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 N -0.692 5.692 4 C 0.556 3.444 5 O -0.532 6.532 6 C -0.095 4.095 7 C -0.092 4.092 8 C -0.093 4.093 9 C -0.125 4.125 10 C 0.565 3.435 11 N -0.851 5.851 12 O -0.539 6.539 13 C -0.067 4.067 14 C -0.070 4.070 15 C -0.147 4.147 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.133 3.867 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.398 0.602 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.402 0.598 34 H 0.405 0.595 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.027 0.973 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 15.187 -5.817 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.069 3.931 3 N -0.342 5.342 4 C 0.342 3.658 5 O -0.410 6.410 6 C -0.099 4.099 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.128 4.128 10 C 0.351 3.649 11 N -0.415 5.415 12 O -0.417 6.417 13 C -0.086 4.086 14 C -0.089 4.089 15 C -0.186 4.186 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.573 5.573 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.212 1.212 26 C 0.006 3.994 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.233 0.767 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.232 0.768 34 H 0.236 0.764 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.805 15.177 -4.598 17.256 hybrid contribution 1.630 -0.153 -0.275 1.660 sum -5.175 15.024 -4.873 16.621 Atomic orbital electron populations 1.22045 0.94075 1.02520 1.02550 1.21562 0.92798 0.80415 0.98280 1.45734 1.48100 1.11861 1.28514 1.18148 0.81243 0.84550 0.81864 1.90710 1.35690 1.78116 1.36523 1.20349 0.98394 0.94602 0.96535 1.21312 0.95752 0.95992 0.98059 1.21175 0.99095 0.93254 0.97618 1.20007 1.01093 0.93661 0.98062 1.18345 0.78186 0.87297 0.81113 1.43759 1.49578 1.17908 1.30222 1.90816 1.59062 1.54894 1.36888 1.21252 0.94353 0.95802 0.97197 1.21303 0.98213 0.91918 0.97417 1.23242 1.00549 0.98959 0.95829 1.21160 0.89918 0.99972 0.83715 1.44439 1.07641 1.79065 1.01782 1.19023 0.89387 1.37735 0.88995 0.90636 1.24745 0.97716 1.01927 0.96003 1.69935 1.24207 1.54001 1.09162 0.86219 0.81854 0.78325 0.79516 1.21621 1.21259 1.21183 1.21921 0.87628 0.94884 0.94966 0.91799 0.90273 0.93186 0.76670 0.84683 0.85092 0.76780 0.76379 0.84037 0.83744 0.91754 0.90735 0.93656 0.93793 0.93827 0.95511 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.59 37.16 0.32 -1.97 16 2 C 0.16 2.66 0.82 -129.55 -0.11 2.56 16 3 N -0.69 -10.80 5.14 -46.39 -0.24 -11.04 16 4 C 0.56 8.96 7.16 -12.25 -0.09 8.87 16 5 O -0.53 -9.97 13.17 5.34 0.07 -9.90 16 6 C -0.10 -1.27 5.88 -104.90 -0.62 -1.89 16 7 C -0.09 -0.99 9.53 -39.24 -0.37 -1.37 16 8 C -0.09 -0.83 9.53 -39.24 -0.37 -1.21 16 9 C -0.12 -1.33 5.88 -104.90 -0.62 -1.94 16 10 C 0.56 6.04 8.05 -12.24 -0.10 5.94 16 11 N -0.85 -5.40 8.82 30.57 0.27 -5.13 16 12 O -0.54 -7.79 17.17 5.34 0.09 -7.70 16 13 C -0.07 -0.77 9.58 -39.24 -0.38 -1.15 16 14 C -0.07 -0.87 9.58 -39.24 -0.38 -1.25 16 15 C -0.15 -2.49 5.97 -24.90 -0.15 -2.64 16 16 C 0.18 4.04 5.36 -3.06 -0.02 4.02 16 17 N -0.60 -15.09 3.39 -169.94 -0.58 -15.67 16 18 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.38 10.31 55.49 0.57 -25.80 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 C 0.13 2.85 6.18 -2.41 -0.01 2.84 16 27 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 28 H 0.08 1.29 5.91 -51.93 -0.31 0.99 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.40 5.42 6.53 -40.82 -0.27 5.15 16 31 H 0.14 1.23 6.39 -52.49 -0.34 0.90 16 32 H 0.13 0.70 6.39 -52.49 -0.34 0.37 16 33 H 0.40 1.49 6.85 -40.82 -0.28 1.21 16 34 H 0.41 2.02 8.93 -40.82 -0.36 1.66 16 35 H 0.14 1.54 7.64 -52.49 -0.40 1.14 16 36 H 0.14 1.78 7.64 -52.49 -0.40 1.38 16 37 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 39 H 0.05 1.12 7.38 -51.93 -0.38 0.74 16 40 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.03 0.58 7.99 -51.93 -0.41 0.16 16 43 H 0.05 1.16 6.89 -51.93 -0.36 0.80 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -34.69 351.26 -8.14 -42.83 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.46 Total: 5.94 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -3.14 Total: 4.12 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.03 Total: -57.64 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.16 Total: -17.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.69 -8.14 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.625 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds