Wall clock time and date at job start Tue Mar 31 2020 11:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21528 * 120.00110 * 359.97438 * 4 3 2 6 6 C 1.48032 * 119.99987 * 179.97438 * 4 3 2 7 7 C 1.39558 * 119.99807 * 359.72929 * 6 4 3 8 8 C 1.37823 * 120.00051 * 179.76613 * 7 6 4 9 9 C 1.39555 * 119.99795 * 0.50534 * 8 7 6 10 10 C 1.48032 * 120.00176 * 179.76616 * 9 8 7 11 11 N 1.34778 * 119.99717 * 359.97438 * 10 9 8 12 12 O 1.21533 * 120.00249 * 179.97438 * 10 9 8 13 13 C 1.39556 * 120.00044 * 359.74863 * 9 8 7 14 14 C 1.37824 * 120.00131 * 359.97438 * 13 9 8 15 15 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 16 16 C 1.54325 * 102.94184 * 206.42607 * 15 2 1 17 17 N 1.47022 * 107.26948 * 22.19107 * 16 15 2 18 18 C 1.36945 * 125.64832 * 181.02381 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47423 * 108.70390 * 1.29074 * 17 16 15 27 27 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 28 28 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 29 29 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 30 30 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 31 31 H 1.08000 * 120.00426 * 359.97438 * 7 6 4 32 32 H 1.07995 * 120.00369 * 180.25054 * 8 7 6 33 33 H 0.96994 * 120.00173 * 359.97438 * 11 10 9 34 34 H 0.97000 * 119.99530 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.00127 * 180.02562 * 13 9 8 36 36 H 1.07994 * 120.00335 * 179.97438 * 14 13 9 37 37 H 1.09000 * 110.72140 * 88.06437 * 15 2 1 38 38 H 1.08998 * 110.72520 * 324.78756 * 15 2 1 39 39 H 1.09002 * 109.88274 * 262.77538 * 16 15 2 40 40 H 1.08996 * 109.88444 * 141.60894 * 16 15 2 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09000 * 110.37068 * 94.48354 * 26 17 16 43 43 H 1.09005 * 110.36651 * 216.80519 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9198 1.8724 1.8420 6 6 2.2144 3.6129 0.9691 7 6 3.0981 4.0222 -0.0305 8 6 3.5868 5.3109 -0.0330 9 6 3.2062 6.2033 0.9701 10 6 3.7351 7.5859 0.9705 11 7 4.5847 7.9826 0.0023 12 8 3.4033 8.3633 1.8438 13 6 2.3267 5.7925 1.9727 14 6 1.8335 4.5055 1.9720 15 6 2.0861 -0.8079 -1.2023 16 6 3.4674 -1.2742 -0.6961 17 7 3.4270 -1.2431 0.7733 18 6 4.4640 -1.5668 1.6072 19 1 4.3332 -1.5120 2.6778 20 6 5.6830 -1.9654 1.0763 21 7 5.8425 -2.0318 -0.2285 22 14 7.0977 -2.4063 2.2138 23 1 8.2800 -2.7972 1.4048 24 1 7.4398 -1.2322 3.0562 25 1 6.6975 -3.5406 3.0847 26 6 2.0835 -0.8120 1.2003 27 1 -0.3634 -1.0252 0.0699 28 1 -0.3633 0.5732 0.8529 29 1 -0.3634 0.4521 -0.9229 30 1 2.6639 1.6542 -0.6973 31 1 3.3964 3.3301 -0.8041 32 1 4.2674 5.6288 -0.8088 33 1 4.8498 7.3621 -0.6945 34 1 4.9309 8.8887 0.0023 35 1 2.0318 6.4833 2.7488 36 1 1.1532 4.1874 2.7481 37 1 2.1922 -0.1699 -2.0797 38 1 1.4467 -1.6632 -1.4210 39 1 4.2426 -0.5999 -1.0600 40 1 3.6649 -2.2894 -1.0401 41 1 6.6945 -2.3100 -0.5994 42 1 1.4523 -1.6782 1.3988 43 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046828484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:53 Heat of formation + Delta-G solvation = -43.278744 kcal Electronic energy + Delta-G solvation = -26432.086438 eV Core-core repulsion = 22669.749668 eV Total energy + Delta-G solvation = -3762.336771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66141 -40.88393 -39.41175 -38.41018 -35.70722 -34.95212 -33.91670 -32.49287 -31.94776 -31.24456 -30.28491 -27.50306 -26.25673 -25.32357 -23.68346 -22.90181 -22.05749 -21.40989 -20.44112 -19.56384 -18.96570 -18.42493 -17.82018 -17.11121 -16.66647 -16.22137 -16.15414 -16.11111 -15.85472 -15.58226 -15.41775 -15.13513 -14.71504 -14.56016 -14.23327 -13.89080 -13.65816 -13.52853 -13.46658 -13.32507 -13.04996 -12.80813 -12.74225 -12.19592 -12.12020 -12.04564 -11.97018 -11.69098 -11.57699 -11.31720 -10.77799 -10.72737 -10.68071 -10.20562 -10.11618 -9.94568 -8.85133 -7.84965 -5.18362 -0.63429 0.26946 1.38707 1.44880 1.46609 1.53123 2.06544 2.18460 2.44074 2.48900 2.84234 3.33104 3.49112 3.64903 3.67909 3.74354 3.84387 3.96278 4.05208 4.20363 4.21510 4.29660 4.57217 4.66056 4.71023 4.78568 4.87492 4.88369 4.93923 5.03425 5.07436 5.09821 5.17737 5.23525 5.40209 5.43836 5.62166 5.66679 5.71036 5.79141 5.83458 6.21205 6.35424 6.59230 7.13182 7.22274 7.22908 7.78329 8.42396 9.24358 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.003696 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.453310 B = 7574.458853 C = 8846.515477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.167 3.833 3 N -0.689 5.689 4 C 0.552 3.448 5 O -0.566 6.566 6 C -0.116 4.116 7 C -0.090 4.090 8 C -0.077 4.077 9 C -0.126 4.126 10 C 0.563 3.437 11 N -0.825 5.825 12 O -0.584 6.584 13 C -0.075 4.075 14 C -0.079 4.079 15 C -0.128 4.128 16 C 0.184 3.816 17 N -0.620 5.620 18 C -0.245 4.245 19 H 0.066 0.934 20 C -0.053 4.053 21 N -0.942 5.942 22 Si 0.970 3.030 23 H -0.288 1.288 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.129 3.871 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.155 0.845 32 H 0.176 0.824 33 H 0.419 0.581 34 H 0.415 0.585 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.023 0.977 40 H 0.008 0.992 41 H 0.248 0.752 42 H 0.025 0.975 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 16.367 -7.902 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.080 3.920 3 N -0.340 5.340 4 C 0.340 3.660 5 O -0.447 6.447 6 C -0.119 4.119 7 C -0.108 4.108 8 C -0.095 4.095 9 C -0.129 4.129 10 C 0.349 3.651 11 N -0.390 5.390 12 O -0.465 6.465 13 C -0.094 4.094 14 C -0.098 4.098 15 C -0.166 4.166 16 C 0.060 3.940 17 N -0.347 5.347 18 C -0.374 4.374 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.591 5.591 22 Si 0.799 3.201 23 H -0.214 1.214 24 H -0.208 1.208 25 H -0.209 1.209 26 C 0.003 3.997 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.246 0.754 31 H 0.172 0.828 32 H 0.193 0.807 33 H 0.251 0.749 34 H 0.248 0.752 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.041 0.959 40 H 0.026 0.974 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.262 16.368 -6.739 18.776 hybrid contribution 1.500 -0.495 0.389 1.626 sum -4.762 15.873 -6.350 17.747 Atomic orbital electron populations 1.21970 0.91889 1.03187 1.03241 1.21410 0.94197 0.80637 0.95796 1.45679 1.48282 1.11145 1.28858 1.18598 0.80611 0.85587 0.81188 1.90690 1.37271 1.79000 1.37739 1.20235 1.00239 0.93188 0.98245 1.21555 0.94693 0.97077 0.97502 1.21569 0.98418 0.91906 0.97591 1.20168 1.00552 0.94145 0.98060 1.18372 0.78541 0.86864 0.81340 1.43571 1.47589 1.18750 1.29088 1.90805 1.60934 1.55894 1.38886 1.21279 0.94925 0.95314 0.97887 1.21244 0.98638 0.92422 0.97455 1.23118 0.96860 1.00042 0.96626 1.20973 0.92964 0.97580 0.82527 1.44670 1.08259 1.79012 1.02709 1.19267 0.90765 1.38103 0.89272 0.91581 1.25444 0.99722 1.02121 0.97435 1.70119 1.24331 1.54367 1.10275 0.85285 0.78969 0.78006 0.77846 1.21352 1.20843 1.20873 1.22029 0.86432 0.95057 0.96193 0.90840 0.91942 0.90427 0.75387 0.82771 0.80664 0.74859 0.75222 0.84166 0.84717 0.88080 0.89043 0.95921 0.97357 0.94246 0.95683 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.59 71.98 0.62 -3.40 16 2 C 0.17 5.47 0.82 5.07 0.00 5.48 16 3 N -0.69 -20.63 5.14 -418.96 -2.15 -22.78 16 4 C 0.55 17.73 7.16 86.84 0.62 18.35 16 5 O -0.57 -21.80 13.17 -3.80 -0.05 -21.85 16 6 C -0.12 -3.01 5.88 -20.04 -0.12 -3.13 16 7 C -0.09 -1.70 9.53 22.49 0.21 -1.48 16 8 C -0.08 -1.11 9.53 22.49 0.21 -0.90 16 9 C -0.13 -2.44 5.88 -20.04 -0.12 -2.55 16 10 C 0.56 10.94 8.05 86.84 0.70 11.64 16 11 N -0.83 -7.77 8.82 -175.47 -1.55 -9.31 16 12 O -0.58 -16.51 17.17 -3.82 -0.07 -16.57 16 13 C -0.08 -1.72 9.58 22.49 0.22 -1.51 16 14 C -0.08 -2.01 9.58 22.49 0.22 -1.79 16 15 C -0.13 -4.05 5.97 31.78 0.19 -3.86 16 16 C 0.18 8.40 5.36 86.73 0.47 8.86 16 17 N -0.62 -31.60 3.39 -691.55 -2.35 -33.95 16 18 C -0.24 -13.96 10.28 84.03 0.86 -13.10 16 19 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.05 -3.01 5.49 84.86 0.47 -2.54 16 21 N -0.94 -54.33 10.31 21.65 0.22 -54.11 16 22 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 C 0.13 5.62 6.18 86.93 0.54 6.16 16 27 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 28 H 0.06 1.99 5.91 -2.39 -0.01 1.98 16 29 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.41 10.22 6.53 -92.71 -0.61 9.61 16 31 H 0.15 2.29 6.39 -2.91 -0.02 2.27 16 32 H 0.18 0.92 6.39 -2.91 -0.02 0.90 16 33 H 0.42 1.21 6.85 -92.71 -0.64 0.58 16 34 H 0.42 2.88 8.93 -92.71 -0.83 2.05 16 35 H 0.14 3.17 7.64 -2.91 -0.02 3.15 16 36 H 0.13 3.58 7.64 -2.91 -0.02 3.55 16 37 H 0.10 2.50 8.09 -2.39 -0.02 2.48 16 38 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 39 H 0.02 1.12 7.38 -2.39 -0.02 1.10 16 40 H 0.01 0.43 7.51 -2.39 -0.02 0.41 16 41 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.03 1.10 7.99 -2.39 -0.02 1.08 16 43 H 0.02 1.18 6.89 -2.38 -0.02 1.16 16 Total: -1.00 -78.67 351.26 0.19 -78.48 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.99 Total: 16.11 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.09 Total: 16.23 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -5.82 Total: -120.15 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.12 Total: -38.42 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -78.67 0.19 -78.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.201 kcal (2) G-P(sol) polarization free energy of solvation -78.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds