Wall clock time and date at job start Tue Mar 31 2020 11:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 110.64052 * 2 1 4 4 C 1.34777 * 120.00258 * 300.70720 * 3 2 1 5 5 O 1.21521 * 120.00062 * 359.97438 * 4 3 2 6 6 C 1.48036 * 119.99902 * 180.02562 * 4 3 2 7 7 C 1.39554 * 120.00209 * 359.71590 * 6 4 3 8 8 C 1.37819 * 120.00236 * 179.73760 * 7 6 4 9 9 C 1.39556 * 119.99451 * 0.52453 * 8 7 6 10 10 C 1.48036 * 119.99634 * 179.73762 * 9 8 7 11 11 N 1.34782 * 120.00341 * 0.02562 * 10 9 8 12 12 O 1.21530 * 119.99844 * 180.02562 * 10 9 8 13 13 C 1.39555 * 120.00484 * 359.75520 * 9 8 7 14 14 C 1.37815 * 119.99833 * 359.97438 * 13 9 8 15 15 C 1.55152 * 110.72039 * 123.14740 * 2 1 3 16 16 C 1.55393 * 101.36426 * 153.94830 * 15 2 1 17 17 N 1.47424 * 104.87465 * 323.01385 * 16 15 2 18 18 C 1.36933 * 125.64929 * 204.10099 * 17 16 15 19 19 H 1.08006 * 120.00160 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00183 * 0.03756 * 18 17 16 21 21 N 1.31621 * 119.99681 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46896 * 90.00263 * 22 20 18 24 24 H 1.48503 * 109.46998 * 210.00208 * 22 20 18 25 25 H 1.48496 * 109.47134 * 329.99949 * 22 20 18 26 26 C 1.47023 * 108.70012 * 24.13409 * 17 16 15 27 27 H 1.09003 * 109.47594 * 59.29895 * 1 2 3 28 28 H 1.09007 * 109.47286 * 179.29612 * 1 2 3 29 29 H 1.08998 * 109.47035 * 299.29129 * 1 2 3 30 30 H 0.96999 * 119.99694 * 120.70110 * 3 2 1 31 31 H 1.08004 * 119.99678 * 359.97438 * 7 6 4 32 32 H 1.07999 * 120.00175 * 180.23437 * 8 7 6 33 33 H 0.96996 * 119.99516 * 0.02562 * 11 10 9 34 34 H 0.96990 * 119.99934 * 179.97438 * 11 10 9 35 35 H 1.07997 * 119.99968 * 179.97438 * 13 9 8 36 36 H 1.08000 * 120.00008 * 179.97438 * 14 13 9 37 37 H 1.09003 * 111.00374 * 272.11479 * 15 2 1 38 38 H 1.08998 * 111.00924 * 35.96836 * 15 2 1 39 39 H 1.09007 * 110.34198 * 204.16536 * 16 15 2 40 40 H 1.09000 * 110.35023 * 81.87143 * 16 15 2 41 41 H 0.97006 * 119.99833 * 179.97438 * 21 20 18 42 42 H 1.09006 * 109.88292 * 239.52442 * 26 17 16 43 43 H 1.09000 * 109.88169 * 118.36390 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7262 2.2117 -1.0035 5 8 1.0095 1.8325 -1.9086 6 6 2.2485 3.5968 -1.0037 7 6 3.0676 4.0339 0.0382 8 6 3.5583 5.3218 0.0352 9 6 3.2271 6.1922 -1.0042 10 6 3.7495 7.5773 -1.0044 11 7 4.5453 7.9977 -0.0011 12 8 3.4607 8.3355 -1.9092 13 6 2.4033 5.7570 -2.0431 14 6 1.9171 4.4674 -2.0430 15 6 2.0789 -0.7935 1.2150 16 6 3.4674 -1.2455 0.6835 17 7 3.2471 -1.5460 -0.7429 18 6 4.0077 -2.3899 -1.5074 19 1 3.7633 -2.5436 -2.5481 20 6 5.0927 -3.0480 -0.9448 21 7 5.3901 -2.8612 0.3237 22 14 6.1306 -4.1986 -1.9880 23 1 7.2373 -3.4337 -2.6168 24 1 6.6952 -5.2710 -1.1297 25 1 5.2845 -4.8058 -3.0465 26 6 2.0760 -0.7890 -1.2087 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5028 0.8963 30 1 2.6187 1.6736 0.7223 31 1 3.3201 3.3616 0.8449 32 1 4.1953 5.6588 0.8396 33 1 4.7761 7.3924 0.7209 34 1 4.8878 8.9051 -0.0015 35 1 2.1467 6.4307 -2.8472 36 1 1.2792 4.1307 -2.8468 37 1 2.1820 -0.1491 2.0881 38 1 1.4469 -1.6530 1.4382 39 1 3.8032 -2.1379 1.2118 40 1 4.1955 -0.4419 0.7939 41 1 6.1481 -3.3214 0.7170 42 1 1.3139 -1.4753 -1.5782 43 1 2.3711 -0.0990 -1.9992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046828485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:56 Heat of formation + Delta-G solvation = -15.688213 kcal Electronic energy + Delta-G solvation = -26236.322522 eV Core-core repulsion = 22475.182167 eV Total energy + Delta-G solvation = -3761.140355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66405 -39.87098 -38.31181 -37.08430 -34.24086 -34.12976 -32.44002 -31.19799 -31.08093 -29.80019 -28.68031 -25.73696 -25.26683 -23.66630 -22.85389 -21.81202 -20.55039 -20.32967 -19.06884 -18.69680 -17.73589 -17.13815 -16.73499 -15.81296 -15.37537 -15.13320 -15.08923 -14.75701 -14.70892 -14.50054 -13.91922 -13.81514 -13.72384 -13.21573 -12.90579 -12.67950 -12.55168 -12.26167 -11.99862 -11.76501 -11.60854 -11.39847 -10.96019 -10.87577 -10.49665 -10.44531 -10.38763 -10.11762 -10.10270 -10.01385 -9.69917 -9.39737 -9.33312 -9.27620 -8.71602 -8.65493 -6.83393 -5.67137 -3.07383 0.23128 1.05003 2.28682 3.08173 3.08985 3.27403 3.39906 3.45152 3.46978 3.74222 4.34297 4.40802 4.48582 4.58897 4.75287 5.00078 5.08305 5.14224 5.35342 5.38014 5.46683 5.53475 5.63308 5.70028 5.85214 5.95222 5.99063 6.08044 6.13642 6.18867 6.29900 6.35975 6.40938 6.46701 6.49383 6.65632 6.79907 6.90730 7.08022 7.40785 7.61454 7.71661 7.81357 7.84648 8.32493 8.39156 9.21496 9.82077 10.46561 11.37256 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003112 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.594926 B = 8993.901261 C = 9770.392857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 N -0.700 5.700 4 C 0.554 3.446 5 O -0.528 6.528 6 C -0.096 4.096 7 C -0.094 4.094 8 C -0.093 4.093 9 C -0.124 4.124 10 C 0.564 3.436 11 N -0.850 5.850 12 O -0.538 6.538 13 C -0.066 4.066 14 C -0.069 4.069 15 C -0.147 4.147 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.217 4.217 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.137 3.863 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.397 0.603 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.405 0.595 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.010 0.990 41 H 0.251 0.749 42 H 0.032 0.968 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 17.641 5.784 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.073 3.927 3 N -0.351 5.351 4 C 0.340 3.660 5 O -0.405 6.405 6 C -0.100 4.100 7 C -0.113 4.113 8 C -0.111 4.111 9 C -0.128 4.128 10 C 0.350 3.650 11 N -0.415 5.415 12 O -0.416 6.416 13 C -0.085 4.085 14 C -0.088 4.088 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.010 3.990 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.232 0.768 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.232 0.768 34 H 0.237 0.763 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.491 17.533 4.496 18.915 hybrid contribution 1.327 -0.311 0.296 1.395 sum -4.164 17.222 4.791 18.355 Atomic orbital electron populations 1.22057 0.94086 1.02414 1.02387 1.21400 0.93120 0.80001 0.98181 1.45929 1.51363 1.12506 1.25255 1.18177 0.80856 0.84620 0.82334 1.90740 1.37228 1.77082 1.35500 1.20359 0.98842 0.94613 0.96164 1.21302 0.96125 0.95916 0.97951 1.21175 0.99033 0.93417 0.97516 1.20019 1.01518 0.93722 0.97517 1.18341 0.77899 0.87174 0.81569 1.43756 1.52878 1.18143 1.26682 1.90820 1.58601 1.56190 1.35949 1.21262 0.94375 0.95596 0.97299 1.21318 0.97840 0.92049 0.97610 1.23452 1.01363 0.98876 0.94940 1.22026 0.89216 1.00636 0.85311 1.44495 1.30515 1.50557 1.07430 1.19098 1.05919 1.16589 0.92947 0.90527 1.24755 0.98769 1.00775 0.96471 1.69770 1.30032 1.46675 1.10960 0.86066 0.80239 0.80218 0.78981 1.21701 1.21669 1.20678 1.21607 0.90320 0.93181 0.93863 0.90765 0.91642 0.93120 0.76802 0.84706 0.85061 0.76801 0.76349 0.83981 0.83695 0.91873 0.90378 0.87389 0.97222 0.93816 0.95060 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.41 37.16 0.31 -1.99 16 2 C 0.16 2.73 0.80 -129.99 -0.10 2.63 16 3 N -0.70 -10.54 5.10 -46.79 -0.24 -10.78 16 4 C 0.55 8.67 6.99 -12.24 -0.09 8.58 16 5 O -0.53 -9.83 13.28 5.35 0.07 -9.75 16 6 C -0.10 -1.22 5.88 -104.89 -0.62 -1.83 16 7 C -0.09 -0.92 9.53 -39.24 -0.37 -1.30 16 8 C -0.09 -0.76 9.53 -39.24 -0.37 -1.13 16 9 C -0.12 -1.24 5.88 -104.90 -0.62 -1.86 16 10 C 0.56 5.70 8.05 -12.24 -0.10 5.60 16 11 N -0.85 -4.88 8.82 30.57 0.27 -4.61 16 12 O -0.54 -7.50 17.17 5.34 0.09 -7.41 16 13 C -0.07 -0.73 9.58 -39.25 -0.38 -1.10 16 14 C -0.07 -0.83 9.58 -39.24 -0.38 -1.21 16 15 C -0.15 -2.55 6.11 -24.32 -0.15 -2.70 16 16 C 0.15 3.52 5.88 -2.27 -0.01 3.50 16 17 N -0.60 -15.39 3.40 -169.76 -0.58 -15.96 16 18 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 21 N -0.93 -26.39 10.09 55.49 0.56 -25.83 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 3.00 6.16 -3.06 -0.02 2.98 16 27 H 0.07 1.23 6.20 -51.93 -0.32 0.90 16 28 H 0.06 0.96 8.12 -51.92 -0.42 0.54 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.40 4.97 6.50 -40.82 -0.27 4.71 16 31 H 0.14 1.07 6.39 -52.48 -0.34 0.73 16 32 H 0.13 0.59 6.39 -52.49 -0.34 0.25 16 33 H 0.40 1.22 6.85 -40.82 -0.28 0.94 16 34 H 0.41 1.81 8.93 -40.82 -0.36 1.44 16 35 H 0.14 1.48 7.64 -52.49 -0.40 1.08 16 36 H 0.15 1.73 7.64 -52.49 -0.40 1.33 16 37 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 38 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 39 H 0.11 2.82 5.87 -51.92 -0.30 2.51 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.03 0.70 7.80 -51.93 -0.41 0.30 16 43 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -34.95 350.39 -8.12 -43.07 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.41 Total: 5.42 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -3.14 Total: 3.48 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.01 Total: -57.18 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.16 Total: -17.16 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.95 -8.12 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.380 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds