Wall clock time and date at job start Tue Mar 31 2020 11:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 110.64052 * 2 1 4 4 C 1.34777 * 120.00258 * 300.70720 * 3 2 1 5 5 O 1.21521 * 120.00062 * 359.97438 * 4 3 2 6 6 C 1.48036 * 119.99902 * 180.02562 * 4 3 2 7 7 C 1.39554 * 120.00209 * 359.71590 * 6 4 3 8 8 C 1.37819 * 120.00236 * 179.73760 * 7 6 4 9 9 C 1.39556 * 119.99451 * 0.52453 * 8 7 6 10 10 C 1.48036 * 119.99634 * 179.73762 * 9 8 7 11 11 N 1.34782 * 120.00341 * 0.02562 * 10 9 8 12 12 O 1.21530 * 119.99844 * 180.02562 * 10 9 8 13 13 C 1.39555 * 120.00484 * 359.75520 * 9 8 7 14 14 C 1.37815 * 119.99833 * 359.97438 * 13 9 8 15 15 C 1.55152 * 110.72039 * 123.14740 * 2 1 3 16 16 C 1.55393 * 101.36426 * 153.94830 * 15 2 1 17 17 N 1.47424 * 104.87465 * 323.01385 * 16 15 2 18 18 C 1.36933 * 125.64929 * 204.10099 * 17 16 15 19 19 H 1.08006 * 120.00160 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00183 * 0.03756 * 18 17 16 21 21 N 1.31621 * 119.99681 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46896 * 90.00263 * 22 20 18 24 24 H 1.48503 * 109.46998 * 210.00208 * 22 20 18 25 25 H 1.48496 * 109.47134 * 329.99949 * 22 20 18 26 26 C 1.47023 * 108.70012 * 24.13409 * 17 16 15 27 27 H 1.09003 * 109.47594 * 59.29895 * 1 2 3 28 28 H 1.09007 * 109.47286 * 179.29612 * 1 2 3 29 29 H 1.08998 * 109.47035 * 299.29129 * 1 2 3 30 30 H 0.96999 * 119.99694 * 120.70110 * 3 2 1 31 31 H 1.08004 * 119.99678 * 359.97438 * 7 6 4 32 32 H 1.07999 * 120.00175 * 180.23437 * 8 7 6 33 33 H 0.96996 * 119.99516 * 0.02562 * 11 10 9 34 34 H 0.96990 * 119.99934 * 179.97438 * 11 10 9 35 35 H 1.07997 * 119.99968 * 179.97438 * 13 9 8 36 36 H 1.08000 * 120.00008 * 179.97438 * 14 13 9 37 37 H 1.09003 * 111.00374 * 272.11479 * 15 2 1 38 38 H 1.08998 * 111.00924 * 35.96836 * 15 2 1 39 39 H 1.09007 * 110.34198 * 204.16536 * 16 15 2 40 40 H 1.09000 * 110.35023 * 81.87143 * 16 15 2 41 41 H 0.97006 * 119.99833 * 179.97438 * 21 20 18 42 42 H 1.09006 * 109.88292 * 239.52442 * 26 17 16 43 43 H 1.09000 * 109.88169 * 118.36390 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7262 2.2117 -1.0035 5 8 1.0095 1.8325 -1.9086 6 6 2.2485 3.5968 -1.0037 7 6 3.0676 4.0339 0.0382 8 6 3.5583 5.3218 0.0352 9 6 3.2271 6.1922 -1.0042 10 6 3.7495 7.5773 -1.0044 11 7 4.5453 7.9977 -0.0011 12 8 3.4607 8.3355 -1.9092 13 6 2.4033 5.7570 -2.0431 14 6 1.9171 4.4674 -2.0430 15 6 2.0789 -0.7935 1.2150 16 6 3.4674 -1.2455 0.6835 17 7 3.2471 -1.5460 -0.7429 18 6 4.0077 -2.3899 -1.5074 19 1 3.7633 -2.5436 -2.5481 20 6 5.0927 -3.0480 -0.9448 21 7 5.3901 -2.8612 0.3237 22 14 6.1306 -4.1986 -1.9880 23 1 7.2373 -3.4337 -2.6168 24 1 6.6952 -5.2710 -1.1297 25 1 5.2845 -4.8058 -3.0465 26 6 2.0760 -0.7890 -1.2087 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5028 0.8963 30 1 2.6187 1.6736 0.7223 31 1 3.3201 3.3616 0.8449 32 1 4.1953 5.6588 0.8396 33 1 4.7761 7.3924 0.7209 34 1 4.8878 8.9051 -0.0015 35 1 2.1467 6.4307 -2.8472 36 1 1.2792 4.1307 -2.8468 37 1 2.1820 -0.1491 2.0881 38 1 1.4469 -1.6530 1.4382 39 1 3.8032 -2.1379 1.2118 40 1 4.1955 -0.4419 0.7939 41 1 6.1481 -3.3214 0.7170 42 1 1.3139 -1.4753 -1.5782 43 1 2.3711 -0.0990 -1.9992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046828485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:56 Heat of formation + Delta-G solvation = -42.136616 kcal Electronic energy + Delta-G solvation = -26237.469411 eV Core-core repulsion = 22475.182167 eV Total energy + Delta-G solvation = -3762.287244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69990 -40.90317 -39.41887 -38.41709 -35.79207 -34.95198 -33.91900 -32.50150 -31.95382 -31.21908 -30.29031 -27.54583 -26.27858 -25.30291 -23.68196 -22.87004 -22.18221 -21.42657 -20.43760 -19.55866 -18.98052 -18.47641 -17.81827 -17.19085 -16.71092 -16.20507 -16.14021 -16.12879 -15.85012 -15.58858 -15.41791 -15.02275 -14.61702 -14.56943 -14.32236 -14.04062 -13.72469 -13.52816 -13.42556 -13.30411 -13.09172 -12.83647 -12.76312 -12.19724 -12.09551 -12.02789 -11.96147 -11.68897 -11.56061 -11.31491 -10.77513 -10.76808 -10.74066 -10.22821 -10.12178 -9.97230 -8.87796 -7.78608 -5.21612 -0.64357 0.26461 1.37810 1.45864 1.46634 1.55734 2.04512 2.14722 2.43996 2.48524 2.83343 3.30529 3.48891 3.65868 3.70445 3.71915 3.84023 3.95641 4.02066 4.17760 4.20920 4.29144 4.56739 4.63948 4.68889 4.79498 4.86286 4.87793 4.91429 5.02585 5.06873 5.10153 5.17616 5.22832 5.35802 5.43372 5.60190 5.64815 5.68705 5.81702 5.83775 6.32319 6.36126 6.56285 7.11900 7.21048 7.22907 7.77745 8.40867 9.22461 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003112 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.594926 B = 8993.901261 C = 9770.392857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 N -0.693 5.693 4 C 0.551 3.449 5 O -0.566 6.566 6 C -0.116 4.116 7 C -0.089 4.089 8 C -0.076 4.076 9 C -0.125 4.125 10 C 0.562 3.438 11 N -0.825 5.825 12 O -0.585 6.585 13 C -0.076 4.076 14 C -0.080 4.080 15 C -0.127 4.127 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.067 0.933 20 C -0.058 4.058 21 N -0.941 5.941 22 Si 0.976 3.024 23 H -0.288 1.288 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.136 3.864 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.411 0.589 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.419 0.581 34 H 0.415 0.585 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.076 0.924 40 H -0.003 1.003 41 H 0.249 0.751 42 H 0.021 0.979 43 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 18.819 8.214 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 N -0.345 5.345 4 C 0.339 3.661 5 O -0.447 6.447 6 C -0.119 4.119 7 C -0.107 4.107 8 C -0.094 4.094 9 C -0.129 4.129 10 C 0.348 3.652 11 N -0.390 5.390 12 O -0.466 6.466 13 C -0.094 4.094 14 C -0.099 4.099 15 C -0.166 4.166 16 C 0.030 3.970 17 N -0.349 5.349 18 C -0.372 4.372 19 H 0.085 0.915 20 C -0.251 4.251 21 N -0.591 5.591 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.009 3.991 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.249 0.751 31 H 0.177 0.823 32 H 0.195 0.805 33 H 0.252 0.748 34 H 0.248 0.752 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.015 0.985 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -4.813 18.731 6.994 20.566 hybrid contribution 1.179 -0.628 -0.465 1.415 sum -3.634 18.103 6.529 19.585 Atomic orbital electron populations 1.21981 0.92132 1.02882 1.03090 1.21191 0.94363 0.80542 0.95589 1.45796 1.51527 1.11450 1.25748 1.18657 0.80119 0.85720 0.81601 1.90719 1.39007 1.78066 1.36874 1.20209 1.00820 0.93000 0.97895 1.21581 0.94802 0.96944 0.97368 1.21589 0.98098 0.92098 0.97596 1.20178 1.00937 0.94175 0.97589 1.18385 0.78181 0.86801 0.81811 1.43567 1.50835 1.18922 1.25639 1.90808 1.60564 1.57222 1.37968 1.21268 0.95041 0.95085 0.98053 1.21242 0.98373 0.92610 0.97636 1.23306 0.97468 0.99755 0.96025 1.21869 0.92313 0.98853 0.83992 1.44770 1.31053 1.50533 1.08568 1.19344 1.06949 1.17685 0.93185 0.91466 1.25500 0.99759 1.02158 0.97724 1.69995 1.30085 1.47099 1.11914 0.85122 0.78525 0.78287 0.77644 1.21514 1.21312 1.20084 1.21682 0.89103 0.92726 0.95546 0.92358 0.91266 0.90129 0.75095 0.82301 0.80473 0.74822 0.75236 0.84286 0.84910 0.87584 0.89780 0.90580 0.98529 0.94128 0.96109 0.97563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.41 71.98 0.61 -3.49 16 2 C 0.17 5.65 0.80 4.79 0.00 5.65 16 3 N -0.69 -19.82 5.10 -420.24 -2.14 -21.96 16 4 C 0.55 17.14 6.99 86.84 0.61 17.75 16 5 O -0.57 -21.79 13.28 -3.78 -0.05 -21.84 16 6 C -0.12 -2.84 5.88 -20.04 -0.12 -2.95 16 7 C -0.09 -1.47 9.53 22.49 0.21 -1.25 16 8 C -0.08 -0.95 9.53 22.49 0.21 -0.73 16 9 C -0.13 -2.25 5.88 -20.04 -0.12 -2.37 16 10 C 0.56 10.25 8.05 86.84 0.70 10.95 16 11 N -0.82 -6.68 8.82 -175.47 -1.55 -8.23 16 12 O -0.58 -15.97 17.17 -3.81 -0.07 -16.04 16 13 C -0.08 -1.65 9.58 22.49 0.22 -1.44 16 14 C -0.08 -1.95 9.58 22.49 0.22 -1.74 16 15 C -0.13 -4.11 6.11 32.15 0.20 -3.91 16 16 C 0.15 7.06 5.88 87.03 0.51 7.57 16 17 N -0.62 -32.39 3.40 -691.00 -2.35 -34.74 16 18 C -0.24 -13.96 10.27 84.03 0.86 -13.10 16 19 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 20 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 21 N -0.94 -54.24 10.09 21.65 0.22 -54.02 16 22 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 C 0.14 6.10 6.16 86.73 0.53 6.63 16 27 H 0.06 1.90 6.20 -2.39 -0.01 1.88 16 28 H 0.07 1.93 8.12 -2.38 -0.02 1.91 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.41 9.12 6.50 -92.71 -0.60 8.52 16 31 H 0.16 1.83 6.39 -2.91 -0.02 1.81 16 32 H 0.18 0.53 6.39 -2.91 -0.02 0.51 16 33 H 0.42 0.56 6.85 -92.71 -0.64 -0.08 16 34 H 0.42 2.41 8.93 -92.72 -0.83 1.59 16 35 H 0.14 3.04 7.64 -2.91 -0.02 3.02 16 36 H 0.13 3.45 7.64 -2.91 -0.02 3.43 16 37 H 0.11 2.56 8.06 -2.39 -0.02 2.54 16 38 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 39 H 0.08 4.01 5.87 -2.38 -0.01 3.99 16 40 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 42 H 0.02 0.97 7.80 -2.38 -0.02 0.95 16 43 H 0.01 0.32 6.68 -2.39 -0.02 0.30 16 Total: -1.00 -79.95 350.39 0.22 -79.73 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.98 Total: 14.49 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.11 Total: 14.74 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -5.82 Total: -118.95 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.12 Total: -37.88 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -79.95 0.22 -79.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.589 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds