Wall clock time and date at job start Tue Mar 31 2020 11:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47138 * 239.99962 * 3 2 1 5 5 H 1.48507 * 109.46990 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47380 * 119.99752 * 3 2 1 7 7 C 1.38818 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00520 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99386 * 0.02562 * 7 2 1 10 10 C 1.46635 * 125.33218 * 0.02593 * 9 7 2 11 11 C 1.53689 * 108.01008 * 180.81172 * 10 9 7 12 12 H 1.08994 * 113.05816 * 253.81024 * 11 10 9 13 13 C 1.53725 * 109.34273 * 127.55409 * 11 10 9 14 14 N 1.46668 * 107.94727 * 266.25739 * 13 11 10 15 15 C 1.34773 * 125.34209 * 180.54403 * 14 13 11 16 16 O 1.21684 * 119.99807 * 359.97438 * 15 14 13 17 17 C 1.46724 * 120.00256 * 179.97438 * 15 14 13 18 18 O 1.35345 * 126.64112 * 0.14106 * 17 15 14 19 19 C 1.33671 * 107.68297 * 180.26523 * 18 17 15 20 20 N 1.30618 * 109.15022 * 359.75759 * 19 18 17 21 21 C 1.33692 * 108.99768 * 359.97438 * 20 19 18 22 22 C 1.50701 * 126.27120 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.51956 * 351.31409 * 22 21 20 24 24 C 1.52999 * 60.00190 * 107.47765 * 23 22 21 25 25 C 1.46780 * 109.32004 * 0.80532 * 14 13 11 26 26 C 1.54159 * 106.52816 * 341.09349 * 25 14 13 27 27 H 1.09006 * 113.82888 * 265.68319 * 26 25 14 28 28 C 1.46746 * 125.32377 * 179.97438 * 9 7 2 29 29 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.76098 * 61.17443 * 10 9 7 31 31 H 1.08996 * 109.76189 * 300.45379 * 10 9 7 32 32 H 1.08994 * 109.77602 * 146.63213 * 13 11 10 33 33 H 1.09005 * 109.76965 * 25.87513 * 13 11 10 34 34 H 1.07994 * 125.41994 * 179.73483 * 19 18 17 35 35 H 1.09002 * 115.55088 * 205.61018 * 22 21 20 36 36 H 1.09001 * 117.49733 * 214.97195 * 23 22 21 37 37 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 38 38 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 39 39 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 40 40 H 1.09004 * 110.02624 * 100.51139 * 25 14 13 41 41 H 1.08999 * 110.02905 * 221.92675 * 25 14 13 42 42 H 1.08997 * 110.00959 * 42.37363 * 28 9 7 43 43 H 1.08993 * 110.01077 * 281.00082 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1346 -2.5242 -0.0005 11 6 -0.4720 -4.0235 0.0206 12 1 -0.8365 -4.3925 -0.9380 13 6 -1.4487 -4.3094 1.1727 14 7 -0.6617 -4.7116 2.3431 15 6 -1.1692 -5.0526 3.5442 16 8 -2.3730 -5.0409 3.7215 17 6 -0.2703 -5.4380 4.6379 18 8 1.0811 -5.4950 4.5907 19 6 1.5128 -5.8947 5.7910 20 7 0.4854 -6.0809 6.5757 21 6 -0.6344 -5.8049 5.8995 22 6 -2.0416 -5.8909 6.4319 23 6 -2.2385 -6.5262 7.8098 24 6 -2.3966 -5.0145 7.6348 25 6 0.7658 -4.6784 2.0031 26 6 0.8509 -4.7081 0.4642 27 1 0.9781 -5.7080 0.0493 28 6 1.9380 -3.7216 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5467 -2.0664 -0.8998 31 1 -0.5505 -2.0404 0.8832 32 1 -2.1269 -5.1144 0.8901 33 1 -2.0197 -3.4100 1.4038 34 1 2.5465 -6.0407 6.0676 35 1 -2.8175 -6.0586 5.6849 36 1 -3.1439 -7.1119 7.9692 37 1 -1.3501 -6.8825 8.3312 38 1 -1.6121 -4.3760 8.0412 39 1 -3.4060 -4.6056 7.6791 40 1 1.2199 -3.7650 2.3874 41 1 1.2694 -5.5503 2.4207 42 1 2.7812 -3.7447 0.6908 43 1 2.2713 -3.9789 -1.0048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049055853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:39 Heat of formation + Delta-G solvation = 54.952520 kcal Electronic energy + Delta-G solvation = -27083.648016 eV Core-core repulsion = 23325.570873 eV Total energy + Delta-G solvation = -3758.077143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.54472 -40.12393 -38.30915 -37.43944 -35.07433 -34.45322 -32.35720 -31.02992 -29.97248 -29.47728 -26.00281 -25.55815 -24.38147 -23.79385 -22.65695 -22.32820 -20.82560 -20.15521 -19.84245 -19.36180 -17.56711 -17.01928 -16.97335 -16.70742 -16.05830 -15.44254 -15.34407 -14.77522 -14.69284 -14.33653 -13.86952 -13.66698 -13.25914 -12.94804 -12.81737 -12.16901 -12.12359 -12.04551 -11.89424 -11.57867 -11.53766 -11.49729 -11.00819 -10.94080 -10.82877 -10.67036 -10.55150 -10.45211 -10.15335 -10.14818 -9.94548 -9.89114 -9.67942 -8.97058 -8.64356 -8.39697 -6.88556 -5.76502 -3.10604 0.75894 2.27496 2.38056 3.07787 3.16731 3.37506 3.41985 3.43505 3.79707 3.90327 4.36727 4.45514 4.50455 4.77070 4.86790 4.94289 5.01299 5.21102 5.25148 5.35642 5.45721 5.46562 5.53184 5.56829 5.59957 5.68086 5.74024 5.85319 5.93190 6.05508 6.06066 6.12590 6.15621 6.22558 6.31462 6.43936 6.51525 6.56380 6.75771 7.37414 7.50346 7.51857 7.59452 7.76546 8.08026 8.21926 9.17349 9.77873 10.41065 11.34882 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.003589 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.169327 B = 7798.821593 C = 8031.268046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.093 0.907 13 C 0.121 3.879 14 N -0.595 5.595 15 C 0.617 3.383 16 O -0.521 6.521 17 C -0.093 4.093 18 O -0.183 6.183 19 C 0.195 3.805 20 N -0.492 5.492 21 C 0.103 3.897 22 C -0.089 4.089 23 C -0.163 4.163 24 C -0.158 4.158 25 C 0.112 3.888 26 C -0.111 4.111 27 H 0.091 0.909 28 C 0.146 3.854 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.255 0.745 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -14.401 9.625 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.059 3.941 11 C -0.143 4.143 12 H 0.112 0.888 13 C 0.000 4.000 14 N -0.326 5.326 15 C 0.404 3.596 16 O -0.400 6.400 17 C -0.148 4.148 18 O -0.068 6.068 19 C -0.030 4.030 20 N -0.221 5.221 21 C -0.020 4.020 22 C -0.107 4.107 23 C -0.200 4.200 24 C -0.196 4.196 25 C -0.010 4.010 26 C -0.131 4.131 27 H 0.109 0.891 28 C 0.019 3.981 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.271 0.729 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.804 -14.336 10.326 17.686 hybrid contribution 0.808 1.155 -0.684 1.567 sum 0.004 -13.181 9.642 16.331 Atomic orbital electron populations 1.69935 1.04882 1.25282 1.56659 1.24800 0.95712 0.97718 1.01955 0.86199 0.78472 0.83176 0.77889 1.21127 1.21568 1.21179 1.18981 0.90412 0.82288 1.44406 0.90414 1.44201 1.01456 0.99932 1.87299 1.21125 0.84624 0.86679 1.01628 1.23185 0.93747 1.00609 0.96758 0.88830 1.21917 0.93901 1.00195 0.84036 1.48125 1.09160 1.64602 1.10686 1.15880 0.85803 0.78220 0.79687 1.90833 1.12828 1.55175 1.81141 1.22818 0.80365 1.13117 0.98527 1.84651 1.21153 1.64991 1.35993 1.28288 1.00958 0.95574 0.78198 1.70217 0.97753 1.20671 1.33454 1.20948 0.94491 0.97691 0.88901 1.20524 0.90551 1.07257 0.92411 1.22979 1.03550 0.95641 0.97860 1.22954 1.02942 0.93768 0.99921 1.22243 0.80605 1.02359 0.95823 1.22958 0.97358 0.99269 0.93486 0.89091 1.21161 0.93672 0.85694 0.97559 0.93605 0.93607 0.93066 0.91776 0.90351 0.72920 0.84354 0.88373 0.87889 0.88723 0.88003 0.90000 0.91119 0.94400 0.96109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.25 55.49 0.57 -25.91 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.27 10.25 -15.05 -0.15 -6.42 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.59 3.37 -171.93 -0.58 -15.17 16 10 C 0.18 4.24 4.75 -3.61 -0.02 4.22 16 11 C -0.12 -2.14 4.02 -88.60 -0.36 -2.50 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 13 C 0.12 2.04 6.23 -3.57 -0.02 2.02 16 14 N -0.59 -10.10 3.31 -173.69 -0.58 -10.67 16 15 C 0.62 10.71 7.81 -12.83 -0.10 10.61 16 16 O -0.52 -9.84 15.17 5.20 0.08 -9.76 16 17 C -0.09 -1.44 6.95 -36.84 -0.26 -1.69 16 18 O -0.18 -2.42 8.15 4.40 0.04 -2.38 16 19 C 0.20 2.02 13.21 52.25 0.69 2.71 16 20 N -0.49 -6.35 10.89 -10.89 -0.12 -6.47 16 21 C 0.10 1.50 6.67 -82.47 -0.55 0.95 16 22 C -0.09 -1.17 5.61 -91.77 -0.51 -1.69 16 23 C -0.16 -1.71 10.15 -26.73 -0.27 -1.99 16 24 C -0.16 -1.80 10.23 -26.73 -0.27 -2.07 16 25 C 0.11 1.79 5.24 -3.28 -0.02 1.78 16 26 C -0.11 -1.76 4.19 -88.24 -0.37 -2.13 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.15 2.78 6.37 -3.42 -0.02 2.75 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.18 7.46 -51.93 -0.39 0.79 16 31 H 0.05 1.34 6.50 -51.93 -0.34 1.00 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.45 7.44 -51.93 -0.39 1.07 16 34 H 0.26 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.14 1.95 6.63 -51.93 -0.34 1.60 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.53 7.72 -51.93 -0.40 1.13 16 41 H 0.07 0.98 6.53 -51.93 -0.34 0.65 16 42 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -32.19 348.51 -8.64 -40.83 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.95 Total: 1.23 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -2.33 Total: 6.32 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.70 Total: -58.23 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.11 Total: -12.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.19 -8.64 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049055853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.785 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds