Wall clock time and date at job start Tue Mar 31 2020 11:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47138 * 239.99962 * 3 2 1 5 5 H 1.48507 * 109.46990 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47380 * 119.99752 * 3 2 1 7 7 C 1.38818 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00520 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99386 * 0.02562 * 7 2 1 10 10 C 1.46635 * 125.33218 * 0.02593 * 9 7 2 11 11 C 1.53689 * 108.01008 * 180.81172 * 10 9 7 12 12 H 1.08994 * 113.05816 * 253.81024 * 11 10 9 13 13 C 1.53725 * 109.34273 * 127.55409 * 11 10 9 14 14 N 1.46668 * 107.94727 * 266.25739 * 13 11 10 15 15 C 1.34773 * 125.34209 * 180.54403 * 14 13 11 16 16 O 1.21684 * 119.99807 * 359.97438 * 15 14 13 17 17 C 1.46724 * 120.00256 * 179.97438 * 15 14 13 18 18 O 1.35345 * 126.64112 * 0.14106 * 17 15 14 19 19 C 1.33671 * 107.68297 * 180.26523 * 18 17 15 20 20 N 1.30618 * 109.15022 * 359.75759 * 19 18 17 21 21 C 1.33692 * 108.99768 * 359.97438 * 20 19 18 22 22 C 1.50701 * 126.27120 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.51956 * 351.31409 * 22 21 20 24 24 C 1.52999 * 60.00190 * 107.47765 * 23 22 21 25 25 C 1.46780 * 109.32004 * 0.80532 * 14 13 11 26 26 C 1.54159 * 106.52816 * 341.09349 * 25 14 13 27 27 H 1.09006 * 113.82888 * 265.68319 * 26 25 14 28 28 C 1.46746 * 125.32377 * 179.97438 * 9 7 2 29 29 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.76098 * 61.17443 * 10 9 7 31 31 H 1.08996 * 109.76189 * 300.45379 * 10 9 7 32 32 H 1.08994 * 109.77602 * 146.63213 * 13 11 10 33 33 H 1.09005 * 109.76965 * 25.87513 * 13 11 10 34 34 H 1.07994 * 125.41994 * 179.73483 * 19 18 17 35 35 H 1.09002 * 115.55088 * 205.61018 * 22 21 20 36 36 H 1.09001 * 117.49733 * 214.97195 * 23 22 21 37 37 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 38 38 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 39 39 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 40 40 H 1.09004 * 110.02624 * 100.51139 * 25 14 13 41 41 H 1.08999 * 110.02905 * 221.92675 * 25 14 13 42 42 H 1.08997 * 110.00959 * 42.37363 * 28 9 7 43 43 H 1.08993 * 110.01077 * 281.00082 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1346 -2.5242 -0.0005 11 6 -0.4720 -4.0235 0.0206 12 1 -0.8365 -4.3925 -0.9380 13 6 -1.4487 -4.3094 1.1727 14 7 -0.6617 -4.7116 2.3431 15 6 -1.1692 -5.0526 3.5442 16 8 -2.3730 -5.0409 3.7215 17 6 -0.2703 -5.4380 4.6379 18 8 1.0811 -5.4950 4.5907 19 6 1.5128 -5.8947 5.7910 20 7 0.4854 -6.0809 6.5757 21 6 -0.6344 -5.8049 5.8995 22 6 -2.0416 -5.8909 6.4319 23 6 -2.2385 -6.5262 7.8098 24 6 -2.3966 -5.0145 7.6348 25 6 0.7658 -4.6784 2.0031 26 6 0.8509 -4.7081 0.4642 27 1 0.9781 -5.7080 0.0493 28 6 1.9380 -3.7216 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5467 -2.0664 -0.8998 31 1 -0.5505 -2.0404 0.8832 32 1 -2.1269 -5.1144 0.8901 33 1 -2.0197 -3.4100 1.4038 34 1 2.5465 -6.0407 6.0676 35 1 -2.8175 -6.0586 5.6849 36 1 -3.1439 -7.1119 7.9692 37 1 -1.3501 -6.8825 8.3312 38 1 -1.6121 -4.3760 8.0412 39 1 -3.4060 -4.6056 7.6791 40 1 1.2199 -3.7650 2.3874 41 1 1.2694 -5.5503 2.4207 42 1 2.7812 -3.7447 0.6908 43 1 2.2713 -3.9789 -1.0048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049055853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:38 Heat of formation + Delta-G solvation = 32.692117 kcal Electronic energy + Delta-G solvation = -27084.613300 eV Core-core repulsion = 23325.570873 eV Total energy + Delta-G solvation = -3759.042427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.53116 -41.50754 -39.70547 -38.41774 -36.65615 -35.47268 -34.15491 -32.38592 -31.23236 -31.13618 -27.64723 -27.09319 -25.78925 -24.78332 -23.93976 -23.24886 -21.93699 -21.81842 -20.99448 -20.79377 -19.03378 -18.48236 -18.09049 -17.92150 -17.37963 -16.68426 -16.55672 -16.36104 -15.87275 -15.62238 -15.52900 -14.82514 -14.72248 -14.43026 -14.33999 -13.65382 -13.56731 -13.28954 -13.12819 -13.04454 -12.91731 -12.75244 -12.67345 -12.42894 -12.07343 -12.02980 -11.90997 -11.87678 -11.68433 -11.53836 -11.48749 -11.36892 -11.10470 -10.68705 -10.09883 -9.66499 -8.87205 -7.85085 -5.19909 -0.30348 1.31779 1.34014 1.45115 1.47724 1.54037 1.84550 1.97862 2.49408 2.91419 3.02426 3.22561 3.32953 3.44240 3.50274 3.64974 3.82019 3.91507 3.95097 4.08442 4.21547 4.25737 4.26614 4.40536 4.45805 4.50391 4.61318 4.69451 4.72443 4.81249 4.88708 4.90549 5.02703 5.06392 5.08863 5.16608 5.21156 5.26461 5.36792 5.48032 5.62918 5.77070 6.20385 6.21903 6.46738 6.78735 7.11361 7.80836 8.41730 9.24683 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.003589 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.169327 B = 7798.821593 C = 8031.268046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.086 0.914 9 N -0.624 5.624 10 C 0.197 3.803 11 C -0.111 4.111 12 H 0.122 0.878 13 C 0.125 3.875 14 N -0.600 5.600 15 C 0.613 3.387 16 O -0.548 6.548 17 C -0.130 4.130 18 O -0.189 6.189 19 C 0.226 3.774 20 N -0.515 5.515 21 C 0.110 3.890 22 C -0.118 4.118 23 C -0.139 4.139 24 C -0.157 4.157 25 C 0.120 3.880 26 C -0.093 4.093 27 H 0.138 0.862 28 C 0.140 3.860 29 H 0.244 0.756 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.310 0.690 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -16.752 10.473 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.104 0.896 9 N -0.350 5.350 10 C 0.072 3.928 11 C -0.131 4.131 12 H 0.140 0.860 13 C 0.003 3.997 14 N -0.331 5.331 15 C 0.402 3.598 16 O -0.429 6.429 17 C -0.185 4.185 18 O -0.076 6.076 19 C 0.002 3.998 20 N -0.243 5.243 21 C -0.014 4.014 22 C -0.137 4.137 23 C -0.176 4.176 24 C -0.194 4.194 25 C -0.003 4.003 26 C -0.112 4.112 27 H 0.156 0.844 28 C 0.014 3.986 29 H 0.053 0.947 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.325 0.675 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.164 -16.724 11.175 20.148 hybrid contribution 0.298 1.857 -0.857 2.067 sum 1.463 -14.866 10.318 18.155 Atomic orbital electron populations 1.70185 1.06314 1.25128 1.58389 1.25621 0.96505 1.01017 1.02762 0.85202 0.77136 0.79040 0.78272 1.20047 1.22501 1.20419 1.19415 0.91086 0.83622 1.42762 0.89633 1.44502 1.02147 1.01349 1.87015 1.20776 0.84129 0.90260 0.97660 1.23043 0.95116 0.96542 0.98387 0.86028 1.21816 0.94003 0.99832 0.84057 1.48192 1.09513 1.64629 1.10748 1.16155 0.85941 0.77677 0.80029 1.90801 1.14053 1.56375 1.81673 1.22410 0.81225 1.16394 0.98449 1.84624 1.20050 1.65622 1.37298 1.29629 1.02432 0.91273 0.76499 1.70274 0.97839 1.22275 1.33928 1.21204 0.95427 0.96039 0.88698 1.20566 0.89960 1.09887 0.93247 1.23045 1.04395 0.95064 0.95071 1.23018 1.03357 0.94518 0.98546 1.22164 0.80092 1.01959 0.96036 1.23018 0.94606 1.00392 0.93172 0.84447 1.21388 0.94771 0.83907 0.98493 0.94653 0.97472 0.97535 0.89312 0.93337 0.67535 0.85851 0.86223 0.87824 0.89299 0.86844 0.93340 0.88288 0.93494 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.47 10.25 21.65 0.22 -57.25 16 2 C -0.07 -3.74 5.48 84.86 0.47 -3.27 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.09 10.25 84.03 0.86 -12.23 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -30.57 3.37 -697.87 -2.35 -32.92 16 10 C 0.20 9.44 4.75 86.59 0.41 9.85 16 11 C -0.11 -3.78 4.02 -9.49 -0.04 -3.81 16 12 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 13 C 0.13 4.24 6.23 86.59 0.54 4.78 16 14 N -0.60 -20.30 3.31 -821.66 -2.72 -23.02 16 15 C 0.61 21.58 7.81 86.46 0.68 22.26 16 16 O -0.55 -21.43 15.17 -4.30 -0.07 -21.49 16 17 C -0.13 -3.96 6.95 24.04 0.17 -3.79 16 18 O -0.19 -4.64 8.15 -7.16 -0.06 -4.70 16 19 C 0.23 3.95 13.21 130.42 1.72 5.67 16 20 N -0.51 -12.20 10.89 -303.12 -3.30 -15.50 16 21 C 0.11 3.10 6.67 41.83 0.28 3.38 16 22 C -0.12 -3.08 5.61 -11.54 -0.06 -3.14 16 23 C -0.14 -2.69 10.15 30.59 0.31 -2.38 16 24 C -0.16 -3.45 10.23 30.60 0.31 -3.13 16 25 C 0.12 3.66 5.24 86.72 0.45 4.11 16 26 C -0.09 -2.69 4.19 -9.25 -0.04 -2.73 16 27 H 0.14 2.88 8.14 -2.38 -0.02 2.86 16 28 C 0.14 5.06 6.37 86.65 0.55 5.61 16 29 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.01 0.39 7.46 -2.39 -0.02 0.37 16 31 H 0.01 0.36 6.50 -2.39 -0.02 0.35 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.05 1.92 7.44 -2.38 -0.02 1.90 16 34 H 0.31 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.12 3.58 6.63 -2.39 -0.02 3.56 16 36 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 2.02 7.92 -2.39 -0.02 2.00 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.05 1.81 7.72 -2.38 -0.02 1.79 16 41 H 0.10 2.47 6.53 -2.39 -0.02 2.46 16 42 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.00 348.51 1.39 -73.61 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.03 Total: 12.45 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 6.61 Total: 21.17 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -8.15 Total: -128.70 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.12 Total: -26.20 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.00 1.39 -73.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049055853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.302 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds