Wall clock time and date at job start Tue Mar 31 2020 11:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99805 * 2 1 4 4 H 1.48501 * 109.47331 * 239.99872 * 3 2 1 5 5 H 1.48500 * 109.47636 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46957 * 120.00018 * 3 2 1 7 7 C 1.38806 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.46641 * 125.33037 * 0.02562 * 9 7 2 11 11 C 1.53690 * 108.01032 * 180.81812 * 10 9 7 12 12 H 1.09008 * 113.05750 * 253.80521 * 11 10 9 13 13 C 1.53725 * 109.34253 * 127.55803 * 11 10 9 14 14 N 1.46658 * 107.94527 * 266.25445 * 13 11 10 15 15 C 1.34782 * 125.34274 * 180.54164 * 14 13 11 16 16 O 1.21580 * 119.99378 * 0.02562 * 15 14 13 17 17 C 1.47504 * 120.00208 * 179.97438 * 15 14 13 18 18 C 1.36825 * 126.94269 * 180.02562 * 17 15 14 19 19 C 1.41266 * 103.84880 * 179.73669 * 18 17 15 20 20 C 1.50697 * 126.70936 * 180.23817 * 19 18 17 21 21 C 1.52997 * 117.49535 * 343.62539 * 20 19 18 22 22 C 1.52995 * 60.00118 * 252.50804 * 21 20 19 23 23 N 1.30135 * 106.58820 * 0.26307 * 19 18 17 24 24 O 1.20887 * 111.98131 * 359.97438 * 23 19 18 25 25 C 1.46777 * 109.32466 * 0.80605 * 14 13 11 26 26 C 1.54164 * 106.52412 * 341.09130 * 25 14 13 27 27 H 1.08994 * 113.83272 * 265.67959 * 26 25 14 28 28 C 1.46746 * 125.33054 * 180.02562 * 9 7 2 29 29 H 0.97008 * 119.99516 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.76059 * 61.18070 * 10 9 7 31 31 H 1.08996 * 109.76535 * 300.46301 * 10 9 7 32 32 H 1.08997 * 109.77347 * 146.62536 * 13 11 10 33 33 H 1.09006 * 109.77205 * 25.87563 * 13 11 10 34 34 H 1.08002 * 128.07958 * 0.02562 * 18 17 15 35 35 H 1.09003 * 115.55140 * 129.32943 * 20 19 18 36 36 H 1.09000 * 117.50366 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49832 * 145.01771 * 21 20 19 38 38 H 1.08996 * 117.50036 * 252.51286 * 22 21 20 39 39 H 1.09004 * 117.51656 * 107.48059 * 22 21 20 40 40 H 1.09000 * 110.02701 * 100.50804 * 25 14 13 41 41 H 1.08997 * 110.02988 * 221.93099 * 25 14 13 42 42 H 1.08999 * 110.01340 * 42.35849 * 28 9 7 43 43 H 1.09005 * 110.00671 * 280.99235 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1345 -2.5242 -0.0028 11 6 -0.4718 -4.0235 0.0171 12 1 -0.8365 -4.3918 -0.9418 13 6 -1.4486 -4.3103 1.1690 14 7 -0.6616 -4.7134 2.3391 15 6 -1.1692 -5.0554 3.5399 16 8 -2.3721 -5.0447 3.7167 17 6 -0.2655 -5.4437 4.6391 18 6 -0.6241 -5.8148 5.9063 19 6 0.6086 -6.0845 6.5413 20 6 0.8084 -6.5419 7.9632 21 6 -0.3657 -6.3763 8.9300 22 6 0.8586 -5.4669 9.0507 23 7 1.5381 -5.8603 5.6585 24 8 1.0791 -5.5019 4.5992 25 6 0.7659 -4.6800 1.9992 26 6 0.8510 -4.7084 0.4602 27 1 0.9783 -5.7079 0.0446 28 6 1.9381 -3.7215 -0.0017 29 1 -0.4850 0.8402 -0.0004 30 1 -0.5466 -2.0657 -0.9017 31 1 -0.5505 -2.0410 0.8813 32 1 -2.1268 -5.1151 0.8856 33 1 -2.0197 -3.4112 1.4007 34 1 -1.6180 -5.8892 6.3225 35 1 1.4461 -7.4167 8.0905 36 1 -1.2828 -5.9370 8.5376 37 1 -0.5008 -7.1425 9.6936 38 1 1.5291 -5.6346 9.8935 39 1 0.7476 -4.4287 8.7376 40 1 1.2199 -3.7669 2.3842 41 1 1.2694 -5.5522 2.4160 42 1 2.7810 -3.7449 0.6890 43 1 2.2720 -3.9784 -1.0071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049088769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:11 Heat of formation + Delta-G solvation = 93.175278 kcal Electronic energy + Delta-G solvation = -26749.612681 eV Core-core repulsion = 22993.193001 eV Total energy + Delta-G solvation = -3756.419680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.10602 -40.21453 -38.32527 -37.89626 -35.08618 -33.47551 -32.54524 -31.95025 -30.26950 -29.48183 -26.01380 -25.56642 -24.88588 -24.18048 -22.98986 -22.32033 -21.61701 -20.12491 -19.57116 -19.33391 -17.91368 -17.70495 -16.86902 -16.48755 -16.24131 -15.60753 -15.31874 -14.76930 -14.71855 -14.35946 -13.96796 -13.67447 -13.23261 -12.99289 -12.81715 -12.45165 -12.22955 -12.00697 -11.95977 -11.86599 -11.52638 -11.48338 -11.42428 -10.92587 -10.82018 -10.78752 -10.51251 -10.20702 -10.13335 -10.10784 -10.05200 -9.88635 -9.76925 -9.65918 -8.62956 -8.49276 -6.86153 -5.74453 -3.08214 0.74710 1.84783 2.53200 3.00151 3.15289 3.31479 3.39672 3.44268 3.45312 3.76093 4.26318 4.45019 4.47914 4.55714 4.71119 4.75214 4.81547 4.98449 5.06918 5.18282 5.25655 5.28693 5.47534 5.48460 5.52373 5.60835 5.65938 5.69032 5.73367 5.74977 5.85013 5.94680 6.12929 6.23107 6.31082 6.39605 6.53673 6.60059 6.78133 7.43416 7.53507 7.56015 7.78558 7.85350 8.07566 8.24101 9.19726 9.80198 10.43266 11.36991 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.003469 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.801674 B = 8068.481373 C = 8833.241097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.123 4.123 12 H 0.094 0.906 13 C 0.121 3.879 14 N -0.590 5.590 15 C 0.612 3.388 16 O -0.521 6.521 17 C -0.067 4.067 18 C -0.155 4.155 19 C 0.040 3.960 20 C -0.087 4.087 21 C -0.163 4.163 22 C -0.162 4.162 23 N -0.342 5.342 24 O 0.124 5.876 25 C 0.106 3.894 26 C -0.109 4.109 27 H 0.092 0.908 28 C 0.145 3.855 29 H 0.253 0.747 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 -14.771 11.840 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.059 3.941 11 C -0.143 4.143 12 H 0.113 0.887 13 C -0.001 4.001 14 N -0.321 5.321 15 C 0.398 3.602 16 O -0.399 6.399 17 C -0.133 4.133 18 C -0.177 4.177 19 C -0.118 4.118 20 C -0.106 4.106 21 C -0.200 4.200 22 C -0.200 4.200 23 N -0.041 5.041 24 O 0.051 5.949 25 C -0.016 4.016 26 C -0.129 4.129 27 H 0.111 0.889 28 C 0.018 3.982 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.199 0.801 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.373 -14.615 12.010 18.920 hybrid contribution -0.250 0.912 0.144 0.957 sum -0.623 -13.702 12.154 18.326 Atomic orbital electron populations 1.69941 1.04861 1.25229 1.56841 1.24794 0.95719 0.97703 1.02040 0.86199 0.78464 0.83181 0.77905 1.21142 1.21610 1.21176 1.18986 0.90439 0.82279 1.44173 0.90388 1.44199 1.01439 0.99956 1.87292 1.21135 0.84673 0.86661 1.01665 1.23192 0.93727 1.00640 0.96725 0.88745 1.21957 0.93931 1.00288 0.83944 1.48157 1.09433 1.63949 1.10591 1.16076 0.85752 0.78537 0.79874 1.90852 1.12953 1.54865 1.81206 1.24205 0.84231 1.07008 0.97875 1.22716 1.00621 1.02441 0.91929 1.22628 0.88924 1.03246 0.96989 1.20096 1.04680 1.01808 0.83992 1.23061 0.93095 1.02933 1.00959 1.23048 1.01057 0.96469 0.99451 1.73714 1.23266 1.14293 0.92876 1.85123 1.19150 1.62331 1.28292 1.22349 0.80285 1.02794 0.96190 1.22945 0.97311 0.99375 0.93308 0.88939 1.21175 0.93740 0.85618 0.97658 0.93648 0.93586 0.93033 0.91614 0.90211 0.80115 0.85707 0.88041 0.87655 0.87764 0.88312 0.89567 0.90797 0.94212 0.96058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.25 55.49 0.57 -25.89 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.22 10.25 -15.06 -0.15 -6.37 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.56 3.37 -171.94 -0.58 -15.14 16 10 C 0.18 4.18 4.75 -3.61 -0.02 4.17 16 11 C -0.12 -2.10 4.02 -88.60 -0.36 -2.45 16 12 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 13 C 0.12 1.97 6.23 -3.58 -0.02 1.95 16 14 N -0.59 -9.70 3.31 -173.41 -0.57 -10.28 16 15 C 0.61 10.18 7.84 -12.48 -0.10 10.09 16 16 O -0.52 -9.71 17.22 5.30 0.09 -9.62 16 17 C -0.07 -0.99 7.06 -36.32 -0.26 -1.25 16 18 C -0.15 -1.96 10.26 -38.94 -0.40 -2.36 16 19 C 0.04 0.49 6.94 -82.16 -0.57 -0.08 16 20 C -0.09 -0.79 6.33 -91.78 -0.58 -1.37 16 21 C -0.16 -1.13 10.04 -26.74 -0.27 -1.40 16 22 C -0.16 -1.27 10.23 -26.73 -0.27 -1.54 16 23 N -0.34 -4.95 12.04 33.52 0.40 -4.55 16 24 O 0.12 1.85 8.66 15.54 0.13 1.99 16 25 C 0.11 1.68 5.25 -3.28 -0.02 1.66 16 26 C -0.11 -1.72 4.19 -88.25 -0.37 -2.09 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.14 2.76 6.37 -3.43 -0.02 2.74 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.05 1.18 7.46 -51.93 -0.39 0.79 16 31 H 0.05 1.33 6.50 -51.93 -0.34 1.00 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.43 7.44 -51.93 -0.39 1.05 16 34 H 0.18 1.91 7.62 -52.49 -0.40 1.51 16 35 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.70 7.34 -51.93 -0.38 0.32 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.59 7.72 -51.93 -0.40 1.19 16 41 H 0.07 1.02 6.56 -51.93 -0.34 0.68 16 42 H 0.04 0.74 7.94 -51.93 -0.41 0.33 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -31.18 350.82 -9.17 -40.35 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.97 Total: -0.39 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.50 Total: 1.42 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.18 Total: -55.86 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.23 Total: -7.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.18 -9.17 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049088769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.523 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds