Wall clock time and date at job start Tue Mar 31 2020 11:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99805 * 2 1 4 4 H 1.48501 * 109.47331 * 239.99872 * 3 2 1 5 5 H 1.48500 * 109.47636 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46957 * 120.00018 * 3 2 1 7 7 C 1.38806 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.46641 * 125.33037 * 0.02562 * 9 7 2 11 11 C 1.53690 * 108.01032 * 180.81812 * 10 9 7 12 12 H 1.09008 * 113.05750 * 253.80521 * 11 10 9 13 13 C 1.53725 * 109.34253 * 127.55803 * 11 10 9 14 14 N 1.46658 * 107.94527 * 266.25445 * 13 11 10 15 15 C 1.34782 * 125.34274 * 180.54164 * 14 13 11 16 16 O 1.21580 * 119.99378 * 0.02562 * 15 14 13 17 17 C 1.47504 * 120.00208 * 179.97438 * 15 14 13 18 18 C 1.36825 * 126.94269 * 180.02562 * 17 15 14 19 19 C 1.41266 * 103.84880 * 179.73669 * 18 17 15 20 20 C 1.50697 * 126.70936 * 180.23817 * 19 18 17 21 21 C 1.52997 * 117.49535 * 343.62539 * 20 19 18 22 22 C 1.52995 * 60.00118 * 252.50804 * 21 20 19 23 23 N 1.30135 * 106.58820 * 0.26307 * 19 18 17 24 24 O 1.20887 * 111.98131 * 359.97438 * 23 19 18 25 25 C 1.46777 * 109.32466 * 0.80605 * 14 13 11 26 26 C 1.54164 * 106.52412 * 341.09130 * 25 14 13 27 27 H 1.08994 * 113.83272 * 265.67959 * 26 25 14 28 28 C 1.46746 * 125.33054 * 180.02562 * 9 7 2 29 29 H 0.97008 * 119.99516 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.76059 * 61.18070 * 10 9 7 31 31 H 1.08996 * 109.76535 * 300.46301 * 10 9 7 32 32 H 1.08997 * 109.77347 * 146.62536 * 13 11 10 33 33 H 1.09006 * 109.77205 * 25.87563 * 13 11 10 34 34 H 1.08002 * 128.07958 * 0.02562 * 18 17 15 35 35 H 1.09003 * 115.55140 * 129.32943 * 20 19 18 36 36 H 1.09000 * 117.50366 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49832 * 145.01771 * 21 20 19 38 38 H 1.08996 * 117.50036 * 252.51286 * 22 21 20 39 39 H 1.09004 * 117.51656 * 107.48059 * 22 21 20 40 40 H 1.09000 * 110.02701 * 100.50804 * 25 14 13 41 41 H 1.08997 * 110.02988 * 221.93099 * 25 14 13 42 42 H 1.08999 * 110.01340 * 42.35849 * 28 9 7 43 43 H 1.09005 * 110.00671 * 280.99235 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1345 -2.5242 -0.0028 11 6 -0.4718 -4.0235 0.0171 12 1 -0.8365 -4.3918 -0.9418 13 6 -1.4486 -4.3103 1.1690 14 7 -0.6616 -4.7134 2.3391 15 6 -1.1692 -5.0554 3.5399 16 8 -2.3721 -5.0447 3.7167 17 6 -0.2655 -5.4437 4.6391 18 6 -0.6241 -5.8148 5.9063 19 6 0.6086 -6.0845 6.5413 20 6 0.8084 -6.5419 7.9632 21 6 -0.3657 -6.3763 8.9300 22 6 0.8586 -5.4669 9.0507 23 7 1.5381 -5.8603 5.6585 24 8 1.0791 -5.5019 4.5992 25 6 0.7659 -4.6800 1.9992 26 6 0.8510 -4.7084 0.4602 27 1 0.9783 -5.7079 0.0446 28 6 1.9381 -3.7215 -0.0017 29 1 -0.4850 0.8402 -0.0004 30 1 -0.5466 -2.0657 -0.9017 31 1 -0.5505 -2.0410 0.8813 32 1 -2.1268 -5.1151 0.8856 33 1 -2.0197 -3.4112 1.4007 34 1 -1.6180 -5.8892 6.3225 35 1 1.4461 -7.4167 8.0905 36 1 -1.2828 -5.9370 8.5376 37 1 -0.5008 -7.1425 9.6936 38 1 1.5291 -5.6346 9.8935 39 1 0.7476 -4.4287 8.7376 40 1 1.2199 -3.7669 2.3842 41 1 1.2694 -5.5522 2.4160 42 1 2.7810 -3.7449 0.6890 43 1 2.2720 -3.9784 -1.0071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049088769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:10 Heat of formation + Delta-G solvation = 74.621620 kcal Electronic energy + Delta-G solvation = -26750.417228 eV Core-core repulsion = 22993.193001 eV Total energy + Delta-G solvation = -3757.224227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.15596 -41.59296 -39.76425 -38.58231 -36.70265 -34.48078 -34.19982 -33.26410 -31.73155 -31.15278 -27.68452 -27.09473 -25.85381 -25.58492 -24.04714 -23.10962 -22.73956 -21.78791 -20.86500 -20.53648 -19.10301 -18.93369 -18.59657 -17.80730 -17.30187 -16.89026 -16.62049 -16.20219 -15.94110 -15.53242 -15.42898 -14.95935 -14.70668 -14.44435 -14.34328 -13.67626 -13.56772 -13.28871 -13.20399 -13.09727 -12.91404 -12.74110 -12.67046 -12.42940 -12.24235 -12.03347 -11.92729 -11.85926 -11.55276 -11.53103 -11.42103 -11.35606 -11.01637 -10.75102 -10.67577 -9.83978 -8.85168 -7.83966 -5.18221 -0.39467 0.87204 1.34573 1.45723 1.48177 1.54313 1.75086 1.96637 2.50275 2.60923 2.93982 3.17268 3.33845 3.43944 3.55496 3.73113 3.78683 3.83848 3.92342 3.95950 4.01604 4.14137 4.23811 4.29531 4.37432 4.51949 4.57771 4.70791 4.71891 4.78987 4.84011 4.91197 4.97339 5.03415 5.07176 5.07845 5.10923 5.20570 5.39039 5.49403 5.65820 5.79623 6.15878 6.23449 6.61034 6.95021 7.13334 7.82542 8.43072 9.25687 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.003469 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.801674 B = 8068.481373 C = 8833.241097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.195 3.805 11 C -0.110 4.110 12 H 0.124 0.876 13 C 0.124 3.876 14 N -0.593 5.593 15 C 0.613 3.387 16 O -0.546 6.546 17 C -0.087 4.087 18 C -0.142 4.142 19 C 0.048 3.952 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.164 4.164 23 N -0.361 5.361 24 O 0.110 5.890 25 C 0.112 3.888 26 C -0.091 4.091 27 H 0.140 0.860 28 C 0.138 3.862 29 H 0.245 0.755 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.202 0.798 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -17.178 12.947 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.350 5.350 10 C 0.069 3.931 11 C -0.130 4.130 12 H 0.142 0.858 13 C 0.002 3.998 14 N -0.324 5.324 15 C 0.400 3.600 16 O -0.426 6.426 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.183 4.183 22 C -0.202 4.202 23 N -0.064 5.064 24 O 0.040 5.960 25 C -0.010 4.010 26 C -0.111 4.111 27 H 0.158 0.842 28 C 0.013 3.987 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.219 0.781 35 H 0.156 0.844 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.062 0.938 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.346 -17.048 13.092 21.498 hybrid contribution -0.421 1.651 -0.123 1.709 sum -0.075 -15.397 12.969 20.132 Atomic orbital electron populations 1.70181 1.06183 1.25101 1.58445 1.25593 0.96541 1.00897 1.02837 0.85219 0.77160 0.79188 0.78186 1.20118 1.22360 1.20625 1.19391 0.91029 0.83697 1.42660 0.89869 1.44497 1.02256 1.01259 1.87001 1.20819 0.83997 0.90392 0.97843 1.23053 0.94959 0.96408 0.98540 0.85778 1.21889 0.93961 1.00229 0.83745 1.48215 1.09645 1.63780 1.10760 1.16252 0.85726 0.77944 0.80077 1.90828 1.14013 1.56046 1.81663 1.24012 0.84393 1.08694 0.98135 1.23067 1.01699 1.00599 0.91034 1.23160 0.88198 1.01552 0.98046 1.20324 1.06995 1.02834 0.82410 1.23207 0.92271 1.02717 1.00088 1.23127 1.02286 0.95481 0.99291 1.73702 1.24053 1.15328 0.93304 1.85093 1.19022 1.63149 1.28782 1.22265 0.79966 1.02277 0.96503 1.23001 0.94678 1.00488 0.92897 0.84239 1.21399 0.94838 0.84015 0.98493 0.94623 0.97348 0.97287 0.88771 0.92836 0.78135 0.84423 0.88054 0.85171 0.85855 0.89812 0.92923 0.88310 0.93762 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 10.25 21.65 0.22 -56.95 16 2 C -0.07 -3.73 5.48 84.86 0.47 -3.26 16 3 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.24 -13.13 10.25 84.03 0.86 -12.27 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -30.66 3.37 -697.89 -2.35 -33.01 16 10 C 0.19 9.21 4.75 86.58 0.41 9.62 16 11 C -0.11 -3.63 4.02 -9.49 -0.04 -3.67 16 12 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 13 C 0.12 3.98 6.23 86.59 0.54 4.52 16 14 N -0.59 -19.21 3.31 -820.82 -2.72 -21.93 16 15 C 0.61 20.23 7.84 86.69 0.68 20.91 16 16 O -0.55 -20.24 17.22 -3.97 -0.07 -20.31 16 17 C -0.09 -2.51 7.06 24.38 0.17 -2.34 16 18 C -0.14 -3.40 10.26 22.68 0.23 -3.17 16 19 C 0.05 1.12 6.94 43.55 0.30 1.42 16 20 C -0.11 -1.70 6.33 -11.54 -0.07 -1.77 16 21 C -0.15 -1.58 10.04 30.59 0.31 -1.27 16 22 C -0.16 -2.20 10.23 30.59 0.31 -1.89 16 23 N -0.36 -10.18 12.04 -48.85 -0.59 -10.77 16 24 O 0.11 3.23 8.66 65.78 0.57 3.80 16 25 C 0.11 3.43 5.25 86.72 0.46 3.89 16 26 C -0.09 -2.64 4.19 -9.26 -0.04 -2.68 16 27 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 28 C 0.14 5.07 6.37 86.64 0.55 5.62 16 29 H 0.24 14.50 8.31 -92.70 -0.77 13.73 16 30 H 0.01 0.45 7.46 -2.39 -0.02 0.43 16 31 H 0.01 0.49 6.50 -2.39 -0.02 0.48 16 32 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.05 2.01 7.44 -2.38 -0.02 1.99 16 34 H 0.20 3.85 7.62 -2.91 -0.02 3.83 16 35 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.12 7.34 -2.39 -0.02 1.10 16 37 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 40 H 0.05 1.98 7.72 -2.39 -0.02 1.96 16 41 H 0.10 2.55 6.56 -2.39 -0.02 2.53 16 42 H 0.04 1.59 7.94 -2.39 -0.02 1.58 16 43 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -71.14 350.82 3.26 -67.88 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.03 Total: 9.64 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 5.14 Total: 13.66 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.44 Total: -122.67 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.50 Total: -16.51 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.14 3.26 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049088769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.499 kcal (2) G-P(sol) polarization free energy of solvation -71.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds