Wall clock time and date at job start Tue Mar 31 2020 11:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47477 * 239.99808 * 3 2 1 5 5 H 1.48507 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47079 * 119.99573 * 3 2 1 7 7 C 1.38806 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99882 * 196.75195 * 7 2 1 9 9 N 1.36935 * 120.00218 * 17.02219 * 7 2 1 10 10 C 1.44577 * 118.64603 * 206.97284 * 9 7 2 11 11 C 1.54864 * 109.59997 * 270.70802 * 10 9 7 12 12 C 1.47091 * 110.32048 * 288.73152 * 11 10 9 13 13 C 1.52567 * 114.32574 * 62.80715 * 12 11 10 14 14 H 1.09002 * 109.48971 * 34.94715 * 13 12 11 15 15 N 1.46503 * 109.49043 * 155.01660 * 13 12 11 16 16 C 1.34770 * 119.99953 * 204.99535 * 15 13 12 17 17 O 1.21725 * 120.00424 * 0.02562 * 16 15 13 18 18 C 1.46503 * 119.99953 * 180.02562 * 16 15 13 19 19 C 1.37775 * 125.85771 * 179.69660 * 18 16 15 20 20 C 1.39937 * 107.68583 * 179.84615 * 19 18 16 21 21 O 1.35114 * 145.13841 * 179.91885 * 20 19 18 22 22 C 1.34387 * 109.62509 * 180.49563 * 21 20 19 23 23 C 1.34469 * 109.44344 * 359.97255 * 22 21 20 24 24 C 1.39141 * 107.40450 * 0.41388 * 20 19 18 25 25 N 1.37116 * 108.10665 * 359.74509 * 24 20 19 26 26 H 0.96995 * 125.74184 * 180.02562 * 25 24 20 27 27 C 1.50883 * 109.35822 * 274.98114 * 13 12 11 28 28 C 1.47601 * 118.64052 * 26.70840 * 9 7 2 29 29 H 0.97003 * 119.99916 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.44645 * 30.74793 * 10 9 7 31 31 H 1.09003 * 109.44613 * 150.66770 * 10 9 7 32 32 H 1.08993 * 109.32892 * 48.99738 * 11 10 9 33 33 H 1.08999 * 109.32229 * 168.64462 * 11 10 9 34 34 H 1.09007 * 108.50863 * 184.05938 * 12 11 10 35 35 H 1.08994 * 108.51693 * 301.70099 * 12 11 10 36 36 H 0.96997 * 119.99679 * 25.00024 * 15 13 12 37 37 H 1.07998 * 126.15718 * 359.97438 * 19 18 16 38 38 H 1.07993 * 125.27985 * 179.97438 * 22 21 20 39 39 H 1.07996 * 126.41110 * 180.02562 * 23 22 21 40 40 H 1.08992 * 109.36597 * 212.07718 * 27 13 12 41 41 H 1.09004 * 109.36465 * 331.70166 * 27 13 12 42 42 H 1.08998 * 108.95194 * 258.57681 * 28 9 7 43 43 H 1.09003 * 108.94596 * 17.20450 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0559 -1.2218 0.2702 9 7 1.3706 -2.3622 -0.3461 10 6 1.8588 -3.6110 0.1946 11 6 2.9372 -4.1992 -0.7485 12 6 2.3176 -4.6931 -1.9878 13 6 1.6343 -3.6140 -2.8222 14 1 2.1937 -2.6822 -2.7402 15 7 1.5891 -4.0358 -4.2245 16 6 1.5138 -3.1129 -5.2037 17 8 1.4838 -1.9288 -4.9231 18 6 1.4682 -3.5347 -6.6059 19 6 1.3851 -2.6987 -7.6979 20 6 1.3699 -3.4990 -8.8458 21 8 1.3105 -3.5003 -10.1956 22 6 1.3354 -4.7657 -10.6472 23 6 1.4118 -5.6116 -9.6047 24 6 1.4351 -4.8250 -8.4295 25 7 1.4949 -4.8393 -7.0597 26 1 1.5476 -5.6319 -6.5031 27 6 0.2291 -3.4040 -2.3142 28 6 0.2075 -2.2854 -1.2516 29 1 -0.4850 0.8401 -0.0004 30 1 2.2938 -3.4352 1.1784 31 1 1.0319 -4.3155 0.2844 32 1 3.6643 -3.4247 -0.9925 33 1 3.4434 -5.0242 -0.2474 34 1 3.0894 -5.1645 -2.5965 35 1 1.5756 -5.4476 -1.7269 36 1 1.6134 -4.9794 -4.4481 37 1 1.3420 -1.6199 -7.6726 38 1 1.2996 -5.0580 -11.6862 39 1 1.4482 -6.6898 -9.6554 40 1 -0.4179 -3.1252 -3.1458 41 1 -0.1363 -4.3293 -1.8687 42 1 -0.7058 -2.3696 -0.6627 43 1 0.2141 -1.3186 -1.7550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052424529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:14 Heat of formation + Delta-G solvation = 28.492711 kcal Electronic energy + Delta-G solvation = -26573.855181 eV Core-core repulsion = 22814.630654 eV Total energy + Delta-G solvation = -3759.224527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.92434 -41.43400 -40.06603 -38.97129 -36.40477 -34.56026 -33.34508 -32.73337 -32.36538 -31.57403 -29.40535 -27.77757 -25.93267 -25.17181 -24.13551 -22.69412 -21.77854 -21.68714 -21.16076 -20.90355 -19.38957 -18.55682 -18.09279 -17.54784 -17.27338 -16.85963 -16.47828 -16.24338 -15.97025 -15.70949 -15.41892 -14.98044 -14.72087 -14.57035 -14.41650 -14.27526 -14.01524 -13.66092 -13.63163 -13.26307 -13.02131 -12.79053 -12.71736 -12.55479 -12.19378 -12.03208 -11.75671 -11.53496 -11.43930 -11.34666 -11.23715 -11.08138 -10.43127 -10.22648 -9.66890 -8.90519 -8.63576 -7.85635 -5.30507 -0.07793 1.19628 1.41139 1.47460 1.47986 1.51480 1.68882 1.74316 2.20288 2.28357 2.51210 3.28914 3.60832 3.68017 3.72230 3.81607 3.95107 4.07241 4.29351 4.36322 4.45286 4.47007 4.47760 4.67252 4.69033 4.75962 4.82351 4.94043 4.99257 5.01498 5.13790 5.21208 5.23884 5.32952 5.41765 5.48844 5.51198 5.58564 5.62230 5.70016 5.77254 6.13345 6.32118 6.42149 6.49923 7.10159 7.19514 7.97700 8.35505 9.19155 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.003201 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.637711 B = 8745.042432 C = 9701.153609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.955 3.045 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.147 3.853 11 C -0.133 4.133 12 C -0.103 4.103 13 C 0.163 3.837 14 H 0.054 0.946 15 N -0.703 5.703 16 C 0.583 3.417 17 O -0.566 6.566 18 C 0.000 4.000 19 C -0.100 4.100 20 C -0.078 4.078 21 O -0.188 6.188 22 C 0.027 3.973 23 C -0.211 4.211 24 C 0.018 3.982 25 N -0.513 5.513 26 H 0.436 0.564 27 C -0.132 4.132 28 C 0.195 3.805 29 H 0.247 0.753 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.411 0.589 37 H 0.148 0.852 38 H 0.260 0.740 39 H 0.188 0.812 40 H 0.048 0.952 41 H 0.078 0.922 42 H -0.002 1.002 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -20.053 -18.963 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.784 3.216 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.173 4.173 12 C -0.140 4.140 13 C 0.059 3.941 14 H 0.073 0.927 15 N -0.354 5.354 16 C 0.370 3.630 17 O -0.444 6.444 18 C -0.112 4.112 19 C -0.128 4.128 20 C -0.129 4.129 21 O -0.087 6.087 22 C -0.040 4.040 23 C -0.232 4.232 24 C -0.096 4.096 25 N -0.119 5.119 26 H 0.278 0.722 27 C -0.172 4.172 28 C 0.069 3.931 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.248 0.752 37 H 0.165 0.835 38 H 0.276 0.724 39 H 0.205 0.795 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.016 0.984 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.484 -18.964 -18.739 26.887 hybrid contribution 0.088 0.877 0.429 0.980 sum 3.572 -18.087 -18.310 25.984 Atomic orbital electron populations 1.70197 1.06516 1.25534 1.55740 1.25707 0.95951 1.01316 1.01469 0.85525 0.77833 0.80158 0.78120 1.21481 1.22087 1.19424 1.19421 0.92851 0.86578 1.40368 0.91767 1.43841 1.34182 1.02714 1.51860 1.20965 0.95302 0.86866 0.94800 1.21292 0.98847 1.00329 0.96852 1.20530 1.00659 0.96590 0.96246 1.20273 0.96298 0.98976 0.78599 0.92731 1.45854 1.74138 1.09525 1.05899 1.17138 0.76513 0.85669 0.83660 1.90951 1.51508 1.18627 1.83322 1.19877 1.15729 0.83345 0.92281 1.20009 1.07242 0.99386 0.86165 1.19336 1.15160 0.95527 0.82883 1.84032 1.75790 1.31193 1.17680 1.25155 0.99150 0.78142 1.01569 1.21016 1.13454 1.01938 0.86748 1.19521 1.08896 0.95964 0.85244 1.40961 1.60092 1.06679 1.04171 0.72216 1.22298 0.96601 1.00026 0.98284 1.20651 0.87957 0.95376 0.89114 0.94442 0.94384 0.93242 0.94405 0.89039 0.90058 0.89844 0.75207 0.83454 0.72438 0.79478 0.93292 0.90361 0.98367 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 11.12 21.65 0.24 -58.12 16 2 C -0.05 -2.90 4.83 84.86 0.41 -2.49 16 3 Si 0.95 48.25 29.59 68.60 2.03 50.28 16 4 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 5 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.26 -14.88 9.43 84.03 0.79 -14.09 16 8 H 0.06 3.57 7.88 -2.91 -0.02 3.54 16 9 N -0.60 -30.40 2.26 -697.67 -1.58 -31.97 16 10 C 0.15 5.75 5.65 87.37 0.49 6.24 16 11 C -0.13 -4.06 5.74 29.39 0.17 -3.89 16 12 C -0.10 -2.63 4.69 28.61 0.13 -2.50 16 13 C 0.16 5.51 2.07 44.16 0.09 5.60 16 14 H 0.05 2.49 6.92 -2.39 -0.02 2.48 16 15 N -0.70 -18.71 4.93 -450.64 -2.22 -20.93 16 16 C 0.58 19.36 7.60 86.40 0.66 20.02 16 17 O -0.57 -25.64 16.53 -4.43 -0.07 -25.71 16 18 C 0.00 0.01 7.03 40.19 0.28 0.29 16 19 C -0.10 -2.94 10.58 22.57 0.24 -2.70 16 20 C -0.08 -2.01 8.20 22.90 0.19 -1.82 16 21 O -0.19 -4.08 10.68 -11.46 -0.12 -4.20 16 22 C 0.03 0.31 12.02 66.96 0.80 1.11 16 23 C -0.21 -2.61 10.89 22.19 0.24 -2.37 16 24 C 0.02 0.37 8.11 39.32 0.32 0.68 16 25 N -0.51 -9.56 6.08 -176.18 -1.07 -10.63 16 26 H 0.44 4.62 8.16 -92.71 -0.76 3.86 16 27 C -0.13 -5.02 5.39 30.35 0.16 -4.86 16 28 C 0.19 9.90 4.71 86.61 0.41 10.31 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.04 1.53 7.99 -2.39 -0.02 1.51 16 31 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 1.62 8.04 -2.38 -0.02 1.60 16 35 H 0.08 1.76 7.35 -2.39 -0.02 1.74 16 36 H 0.41 6.79 7.69 -92.71 -0.71 6.08 16 37 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.26 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 40 H 0.05 1.92 7.85 -2.39 -0.02 1.90 16 41 H 0.08 2.49 7.31 -2.38 -0.02 2.47 16 42 H 0.00 -0.09 8.03 -2.39 -0.02 -0.11 16 43 H 0.03 1.59 6.39 -2.39 -0.02 1.57 16 Total: -1.00 -82.59 349.87 2.19 -80.40 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.41 Total: 11.34 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.39 Total: 9.54 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -4.63 Total: -121.65 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.20 Total: -29.92 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -82.59 2.19 -80.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052424529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.893 kcal (2) G-P(sol) polarization free energy of solvation -82.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds