Wall clock time and date at job start Tue Mar 31 2020 11:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48497 * 109.47208 * 240.00636 * 3 2 1 5 5 H 1.48500 * 109.46813 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47092 * 120.00036 * 3 2 1 7 7 C 1.38819 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99679 * 160.40459 * 7 2 1 9 9 N 1.36936 * 120.00137 * 340.40284 * 7 2 1 10 10 C 1.50160 * 120.53758 * 336.70746 * 9 7 2 11 11 C 1.46237 * 107.53547 * 109.56736 * 10 9 7 12 12 C 1.52527 * 114.27574 * 58.40392 * 11 10 9 13 13 C 1.50127 * 105.41799 * 270.59673 * 12 11 10 14 14 H 1.09000 * 109.21008 * 337.38319 * 13 12 11 15 15 N 1.46504 * 109.21117 * 218.02754 * 13 12 11 16 16 C 1.34767 * 120.00136 * 154.99820 * 15 13 12 17 17 O 1.21729 * 120.00327 * 0.02562 * 16 15 13 18 18 C 1.46498 * 120.00445 * 179.97438 * 16 15 13 19 19 C 1.37774 * 125.86445 * 180.02562 * 18 16 15 20 20 C 1.39930 * 107.69199 * 180.02562 * 19 18 16 21 21 O 1.35112 * 145.14547 * 180.02562 * 20 19 18 22 22 C 1.34376 * 109.62809 * 179.97438 * 21 20 19 23 23 C 1.34461 * 109.44951 * 0.02976 * 22 21 20 24 24 C 1.39143 * 107.40374 * 359.97438 * 20 19 18 25 25 N 1.37114 * 108.10395 * 0.02562 * 24 20 19 26 26 H 0.97010 * 125.73903 * 179.73404 * 25 24 20 27 27 C 1.54839 * 110.81365 * 97.68439 * 13 12 11 28 28 C 1.43438 * 120.53537 * 156.68461 * 9 7 2 29 29 H 0.96995 * 120.00248 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.84833 * 350.05993 * 10 9 7 31 31 H 1.09001 * 109.90387 * 229.10682 * 10 9 7 32 32 H 1.09003 * 108.52041 * 297.16750 * 11 10 9 33 33 H 1.08996 * 108.52569 * 179.64852 * 11 10 9 34 34 H 1.09003 * 110.24665 * 151.62625 * 12 11 10 35 35 H 1.08993 * 110.25244 * 29.57551 * 12 11 10 36 36 H 0.96999 * 119.99647 * 334.99994 * 15 13 12 37 37 H 1.08005 * 126.15033 * 0.03319 * 19 18 16 38 38 H 1.08002 * 125.27961 * 180.02562 * 22 21 20 39 39 H 1.07996 * 126.41815 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.36331 * 81.33946 * 27 13 12 41 41 H 1.09004 * 109.35905 * 200.92713 * 27 13 12 42 42 H 1.08999 * 108.15765 * 33.31117 * 28 9 7 43 43 H 1.08996 * 108.15674 * 150.08219 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6962 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0433 -1.2292 -0.3142 9 7 1.3849 -2.3540 0.3967 10 6 0.1862 -2.2990 1.2994 11 6 -0.9806 -2.6836 0.5062 12 6 -0.8831 -4.0705 -0.1211 13 6 -0.2326 -3.8593 -1.4575 14 1 -0.3829 -2.8260 -1.7702 15 7 -0.8484 -4.7545 -2.4402 16 6 -0.8249 -4.4362 -3.7495 17 8 -0.2915 -3.4051 -4.1158 18 6 -1.4401 -5.3316 -4.7323 19 6 -1.4854 -5.1265 -6.0940 20 6 -2.1591 -6.2118 -6.6653 21 8 -2.6006 -6.7602 -7.8184 22 6 -3.2200 -7.9237 -7.5568 23 6 -3.1955 -8.1561 -6.2327 24 6 -2.5171 -7.0707 -5.6308 25 7 -2.0747 -6.5264 -4.4526 26 1 -2.1913 -6.9132 -3.5707 27 6 1.2860 -4.1523 -1.3828 28 6 1.8642 -3.6324 -0.0431 29 1 -0.4850 0.8400 0.0004 30 1 0.0566 -1.2863 1.6812 31 1 0.3146 -2.9937 2.1295 32 1 -1.1141 -1.9519 -0.2907 33 1 -1.8607 -2.6552 1.1485 34 1 -1.8778 -4.4975 -0.2489 35 1 -0.2680 -4.7226 0.4990 36 1 -1.2731 -5.5763 -2.1484 37 1 -1.0746 -4.2804 -6.6249 38 1 -3.6682 -8.5717 -8.2955 39 1 -3.6138 -9.0121 -5.7241 40 1 1.4505 -5.2274 -1.4542 41 1 1.7910 -3.6557 -2.2113 42 1 2.9482 -3.5734 -0.1410 43 1 1.6347 -4.3655 0.7300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052424533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:17 Heat of formation + Delta-G solvation = 59.856037 kcal Electronic energy + Delta-G solvation = -26608.926020 eV Core-core repulsion = 22851.061509 eV Total energy + Delta-G solvation = -3757.864511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.07014 -40.19745 -38.84021 -37.50805 -34.72369 -32.57261 -32.34070 -31.58554 -30.78907 -30.02933 -28.29513 -26.17734 -24.36747 -23.73454 -22.43568 -21.79802 -20.84773 -20.39588 -19.69133 -19.17045 -18.40881 -17.14142 -16.73685 -16.40791 -15.92017 -15.36227 -15.13136 -14.70717 -14.56137 -14.13743 -13.78861 -13.76760 -13.59342 -13.26720 -13.12686 -13.00257 -12.47606 -12.26332 -11.91179 -11.86777 -11.49219 -11.23763 -10.77627 -10.65230 -10.41095 -10.31045 -10.24178 -10.09349 -9.79792 -9.67450 -9.51129 -9.36459 -8.76423 -8.69841 -8.37631 -7.99482 -6.69481 -5.75489 -3.14253 0.90311 2.13272 2.33709 2.50927 2.76386 3.41201 3.44523 3.45914 3.49732 3.51224 4.37905 4.55918 4.62597 4.88370 5.09603 5.28822 5.32413 5.37364 5.39960 5.52134 5.63317 5.71089 5.81934 5.96111 5.98070 6.15145 6.22488 6.25532 6.35642 6.43615 6.45552 6.66645 6.80896 6.87550 6.91275 6.98015 6.99686 7.06725 7.15587 7.19785 7.58439 7.71864 7.77920 7.97644 8.37418 8.46258 9.22662 9.89965 10.41899 11.32405 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023767 B = 0.002957 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.830343 B = 9466.569805 C =10039.148375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.156 3.844 14 H 0.107 0.893 15 N -0.724 5.724 16 C 0.579 3.421 17 O -0.509 6.509 18 C 0.018 3.982 19 C -0.086 4.086 20 C -0.038 4.038 21 O -0.169 6.169 22 C 0.007 3.993 23 C -0.202 4.202 24 C 0.004 3.996 25 N -0.533 5.533 26 H 0.419 0.581 27 C -0.152 4.152 28 C 0.162 3.838 29 H 0.253 0.747 30 H 0.091 0.909 31 H 0.006 0.994 32 H 0.104 0.896 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.385 0.615 37 H 0.161 0.839 38 H 0.211 0.789 39 H 0.152 0.848 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 -18.089 -7.718 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.054 3.946 14 H 0.125 0.875 15 N -0.374 5.374 16 C 0.364 3.636 17 O -0.383 6.383 18 C -0.095 4.095 19 C -0.113 4.113 20 C -0.090 4.090 21 O -0.066 6.066 22 C -0.061 4.061 23 C -0.223 4.223 24 C -0.109 4.109 25 N -0.137 5.137 26 H 0.257 0.743 27 C -0.194 4.194 28 C 0.032 3.968 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.218 0.782 37 H 0.179 0.821 38 H 0.227 0.773 39 H 0.170 0.830 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.779 -17.016 -8.073 20.377 hybrid contribution -0.097 -0.106 0.446 0.469 sum -7.876 -17.122 -7.627 20.332 Atomic orbital electron populations 1.69933 1.05087 1.25384 1.54120 1.24883 0.95239 0.98229 1.01057 0.86382 0.78977 0.83530 0.77996 1.20990 1.21760 1.21257 1.19159 0.93677 0.85271 1.39865 0.91507 1.44262 1.33722 1.00908 1.52018 1.20161 0.85233 1.00606 0.89878 1.20934 0.98528 0.94896 1.02506 1.21371 0.98610 0.99979 0.95963 1.21375 0.92218 0.94851 0.86192 0.87548 1.46437 1.58918 1.25500 1.06534 1.16875 0.79931 0.84948 0.81815 1.90948 1.43957 1.24132 1.79259 1.20598 1.05735 0.88832 0.94306 1.19940 1.03434 0.97906 0.90057 1.19304 1.07883 0.98949 0.82842 1.84019 1.60422 1.31750 1.30424 1.24017 0.98706 0.87040 0.96352 1.20532 1.08251 1.00066 0.93484 1.19012 1.06578 0.98736 0.86555 1.41164 1.47125 1.18185 1.07229 0.74307 1.23327 0.95064 0.98551 1.02473 1.20352 0.96462 0.88215 0.91741 0.93689 0.89086 0.97585 0.87807 0.95124 0.92939 0.91773 0.78240 0.82147 0.77279 0.83015 0.93721 0.92280 0.94711 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 9.42 55.49 0.52 -24.41 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.85 29.60 -169.99 -5.03 16.82 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.76 9.63 -15.06 -0.14 -6.91 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 9 N -0.59 -14.15 2.60 -175.09 -0.46 -14.61 16 10 C 0.16 3.71 5.24 -5.21 -0.03 3.69 16 11 C -0.13 -2.66 5.02 -30.19 -0.15 -2.81 16 12 C -0.12 -2.03 5.34 -28.40 -0.15 -2.19 16 13 C 0.16 2.88 2.22 -68.39 -0.15 2.73 16 14 H 0.11 2.55 6.27 -51.93 -0.33 2.23 16 15 N -0.72 -10.76 4.97 -55.62 -0.28 -11.04 16 16 C 0.58 9.75 7.73 -12.94 -0.10 9.65 16 17 O -0.51 -10.97 16.53 5.16 0.09 -10.89 16 18 C 0.02 0.25 7.03 -81.86 -0.58 -0.32 16 19 C -0.09 -1.23 10.58 -39.12 -0.41 -1.65 16 20 C -0.04 -0.51 8.20 -38.61 -0.32 -0.82 16 21 O -0.17 -1.99 10.68 3.24 0.03 -1.96 16 22 C 0.01 0.05 12.02 29.40 0.35 0.41 16 23 C -0.20 -1.74 10.89 -39.70 -0.43 -2.17 16 24 C 0.00 0.05 8.11 -83.95 -0.68 -0.63 16 25 N -0.53 -5.79 6.08 -7.04 -0.04 -5.83 16 26 H 0.42 3.18 8.16 -40.82 -0.33 2.85 16 27 C -0.15 -2.89 5.98 -24.76 -0.15 -3.04 16 28 C 0.16 3.33 5.18 -4.66 -0.02 3.30 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.09 2.31 6.05 -51.93 -0.31 2.00 16 31 H 0.01 0.13 8.13 -51.93 -0.42 -0.30 16 32 H 0.10 2.54 5.29 -51.93 -0.27 2.27 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.06 1.02 6.28 -51.93 -0.33 0.70 16 36 H 0.39 4.21 7.57 -40.82 -0.31 3.90 16 37 H 0.16 2.22 8.06 -52.48 -0.42 1.79 16 38 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.03 0.72 7.99 -51.93 -0.41 0.31 16 43 H 0.03 0.52 6.88 -51.93 -0.36 0.17 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -32.39 344.49 -8.59 -40.98 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.57 Total: 6.50 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.05 Total: -0.75 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.25 Total: -55.89 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.12 Total: -12.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.39 -8.59 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052424533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.832 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds