Wall clock time and date at job start Tue Mar 31 2020 11:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38609 * 119.54627 * 2 1 4 4 C 1.38577 * 119.34619 * 179.97438 * 3 2 1 5 5 C 1.38632 * 118.49055 * 359.74242 * 4 3 2 6 6 C 1.39268 * 119.06144 * 0.52004 * 5 4 3 7 7 C 1.48165 * 119.72364 * 179.75195 * 6 5 4 8 8 O 1.21517 * 120.00371 * 351.22595 * 7 6 5 9 9 N 1.34785 * 120.00005 * 171.22380 * 7 6 5 10 10 C 1.47118 * 121.06447 * 171.87990 * 9 7 6 11 11 C 1.53226 * 108.74395 * 127.71519 * 10 9 7 12 12 O 1.43136 * 109.34411 * 54.21601 * 11 10 9 13 13 C 1.42373 * 113.98671 * 300.24154 * 12 11 10 14 14 C 1.52917 * 114.28547 * 285.01271 * 13 12 11 15 15 N 1.47171 * 87.84636 * 271.73303 * 14 13 12 16 16 C 1.36938 * 135.99994 * 153.32699 * 15 14 13 17 17 H 1.08000 * 119.99914 * 14.01555 * 16 15 14 18 18 C 1.38812 * 120.00218 * 194.01258 * 16 15 14 19 19 N 1.31615 * 120.00435 * 199.91398 * 18 16 15 20 20 Si 1.86806 * 119.99756 * 19.91612 * 18 16 15 21 21 H 1.48499 * 109.46850 * 269.99989 * 20 18 16 22 22 H 1.48497 * 109.47052 * 29.99712 * 20 18 16 23 23 H 1.48499 * 109.47417 * 150.00029 * 20 18 16 24 24 C 1.47161 * 87.99867 * 333.58269 * 15 14 13 25 25 C 1.47366 * 121.06145 * 351.90436 * 9 7 6 26 26 N 1.31494 * 119.54905 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47364 * 269.98417 * 1 2 3 28 28 H 1.09010 * 109.47219 * 29.98688 * 1 2 3 29 29 H 1.09003 * 109.47330 * 149.98011 * 1 2 3 30 30 H 1.07998 * 120.32644 * 0.02562 * 3 2 1 31 31 H 1.08006 * 120.75650 * 179.97438 * 4 3 2 32 32 H 1.08011 * 120.47116 * 180.26902 * 5 4 3 33 33 H 1.08998 * 109.59118 * 247.49163 * 10 9 7 34 34 H 1.09000 * 109.59157 * 7.93531 * 10 9 7 35 35 H 1.09001 * 109.49354 * 174.17881 * 11 10 9 36 36 H 1.09002 * 109.49528 * 294.23277 * 11 10 9 37 37 H 1.09005 * 113.49170 * 156.98638 * 14 13 12 38 38 H 1.08996 * 113.54930 * 26.48733 * 14 13 12 39 39 H 0.96999 * 119.99600 * 354.96185 * 19 18 16 40 40 H 1.09007 * 113.48257 * 141.16362 * 24 15 14 41 41 H 1.08999 * 113.49258 * 271.66953 * 24 15 14 42 42 H 1.09003 * 109.74755 * 108.57217 * 25 9 7 43 43 H 1.08992 * 109.74921 * 347.84179 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 0.0005 5 6 4.2333 -0.0197 0.0065 6 6 3.4820 -1.1924 0.0007 7 6 4.1692 -2.5051 0.0015 8 8 5.3731 -2.5608 -0.1535 9 7 3.4588 -3.6375 0.1740 10 6 4.0832 -4.9586 0.0037 11 6 3.8036 -5.8002 1.2532 12 8 2.3933 -5.8349 1.4957 13 6 1.8105 -4.5530 1.7057 14 6 2.1066 -3.9445 3.0770 15 7 0.9123 -4.6405 3.5821 16 6 0.4914 -5.1224 4.7928 17 1 0.9996 -4.8256 5.6984 18 6 -0.5886 -5.9921 4.8562 19 7 -1.2408 -6.1502 5.9884 20 14 -1.1163 -6.9384 3.3344 21 1 -2.1187 -6.1436 2.5802 22 1 0.0666 -7.1891 2.4725 23 1 -1.7164 -8.2345 3.7407 24 6 0.3718 -4.5973 2.2140 25 6 2.0318 -3.5917 0.5389 26 7 2.1555 -1.1439 -0.0005 27 1 -0.3634 -0.0003 1.0277 28 1 -0.3634 0.8902 -0.5137 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6484 2.1399 0.0004 31 1 4.1318 2.1272 0.0001 32 1 5.3126 -0.0608 0.0115 33 1 3.6608 -5.4524 -0.8715 34 1 5.1592 -4.8406 -0.1243 35 1 4.1710 -6.8146 1.0983 36 1 4.3096 -5.3571 2.1110 37 1 2.0181 -2.8582 3.0986 38 1 3.0368 -4.3005 3.5197 39 1 -0.9233 -5.7160 6.7956 40 1 -0.1605 -5.5046 1.9284 41 1 -0.1932 -3.6904 1.9985 42 1 1.4240 -3.8995 -0.3120 43 1 1.7607 -2.5796 0.8391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053162332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:18 Heat of formation + Delta-G solvation = 55.923535 kcal Electronic energy + Delta-G solvation = -27650.496609 eV Core-core repulsion = 23892.461572 eV Total energy + Delta-G solvation = -3758.035037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18359 -40.03176 -38.78576 -36.42472 -34.79432 -33.28593 -32.83201 -32.37375 -30.25305 -28.35250 -27.86078 -26.02162 -25.52846 -24.87625 -23.23283 -22.24236 -21.46497 -19.91933 -18.97029 -17.82078 -17.39097 -16.96794 -16.40333 -16.11149 -15.84249 -15.79458 -14.95604 -14.74991 -14.59028 -14.42992 -14.11543 -13.81389 -13.65078 -13.52661 -13.21141 -13.06500 -12.72489 -12.59947 -12.46467 -12.29488 -11.87243 -11.61166 -11.30132 -11.10644 -10.73806 -10.65545 -10.43301 -10.34737 -10.20178 -9.68863 -9.36355 -9.27531 -9.14196 -8.97383 -8.58278 -8.38083 -7.11759 -6.28765 -3.19023 0.39760 0.89113 2.55365 2.77871 3.46938 3.56125 3.62606 3.73770 3.79502 3.96555 4.31400 4.41297 4.65690 4.67781 4.69617 4.76656 4.92645 4.97136 5.02704 5.11260 5.23981 5.29063 5.31613 5.40072 5.41592 5.50291 5.68562 5.72159 5.77959 5.79720 5.84256 5.91160 6.07079 6.15849 6.18180 6.27241 6.28201 6.39862 6.53362 6.57142 7.18564 7.25298 7.47168 7.64679 8.00227 8.29048 9.00430 9.55311 10.42615 11.20821 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.004722 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.228629 B = 5928.048297 C = 7007.265269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.127 3.873 3 C -0.150 4.150 4 C -0.077 4.077 5 C -0.119 4.119 6 C 0.088 3.912 7 C 0.573 3.427 8 O -0.540 6.540 9 N -0.589 5.589 10 C 0.076 3.924 11 C 0.047 3.953 12 O -0.337 6.337 13 C 0.054 3.946 14 C 0.103 3.897 15 N -0.613 5.613 16 C -0.307 4.307 17 H 0.076 0.924 18 C -0.016 4.016 19 N -0.925 5.925 20 Si 1.056 2.944 21 H -0.293 1.293 22 H -0.270 1.270 23 H -0.297 1.297 24 C 0.122 3.878 25 C 0.078 3.922 26 N -0.450 5.450 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.261 0.739 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 14.257 -16.652 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.013 4.013 3 C -0.170 4.170 4 C -0.103 4.103 5 C -0.140 4.140 6 C -0.049 4.049 7 C 0.360 3.640 8 O -0.418 6.418 9 N -0.321 5.321 10 C -0.047 4.047 11 C -0.030 4.030 12 O -0.255 6.255 13 C 0.012 3.988 14 C -0.024 4.024 15 N -0.341 5.341 16 C -0.433 4.433 17 H 0.094 0.906 18 C -0.216 4.216 19 N -0.567 5.567 20 Si 0.888 3.112 21 H -0.221 1.221 22 H -0.196 1.196 23 H -0.225 1.225 24 C -0.004 4.004 25 C -0.045 4.045 26 N -0.163 5.163 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.134 12.084 -17.041 22.075 hybrid contribution 1.810 2.074 0.692 2.839 sum 8.944 14.159 -16.349 23.404 Atomic orbital electron populations 1.20810 0.87951 1.03923 1.03960 1.21536 0.97517 0.88058 0.94163 1.22200 0.95002 0.99487 1.00336 1.21626 0.94459 0.98257 0.95910 1.22069 1.02209 0.91701 0.98016 1.21096 0.89707 0.94038 1.00104 1.17883 0.85980 0.83079 0.77035 1.90755 1.13278 1.86508 1.51226 1.48014 1.11982 1.05185 1.66900 1.22372 1.00291 0.82733 0.99272 1.22908 0.83715 1.00645 0.95776 1.88010 1.20034 1.26277 1.91154 1.23127 0.97680 0.84524 0.93455 1.22841 0.92601 0.95820 0.91112 1.45633 1.15917 1.67392 1.05120 1.19948 1.16909 1.24655 0.81805 0.90648 1.25793 0.94590 0.97287 1.03967 1.70949 1.36374 1.48764 1.00579 0.83901 0.75833 0.76651 0.74838 1.22137 1.19613 1.22496 1.22542 0.91693 1.00167 0.85991 1.23296 0.79448 1.04343 0.97433 1.67583 1.08408 1.28629 1.11728 0.89616 0.90436 0.89885 0.84198 0.83991 0.83482 0.90402 0.88236 0.87757 0.92640 0.94006 0.93737 0.92892 0.92406 0.92478 0.90819 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.17 36.01 0.37 -0.47 16 2 C 0.13 1.26 6.78 -82.60 -0.56 0.70 16 3 C -0.15 -1.19 9.75 -39.32 -0.38 -1.57 16 4 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 5 C -0.12 -1.27 9.63 -39.05 -0.38 -1.65 16 6 C 0.09 1.16 6.58 -83.01 -0.55 0.61 16 7 C 0.57 8.68 7.67 -12.18 -0.09 8.59 16 8 O -0.54 -9.06 15.84 5.35 0.08 -8.98 16 9 N -0.59 -8.80 3.03 -173.47 -0.53 -9.33 16 10 C 0.08 1.02 6.61 -3.59 -0.02 1.00 16 11 C 0.05 0.71 6.90 37.27 0.26 0.97 16 12 O -0.34 -6.62 10.53 -35.23 -0.37 -6.99 16 13 C 0.05 1.03 1.28 -90.96 -0.12 0.91 16 14 C 0.10 2.19 7.91 -8.22 -0.07 2.12 16 15 N -0.61 -15.68 3.54 -184.99 -0.65 -16.33 16 16 C -0.31 -9.11 10.99 -15.06 -0.17 -9.28 16 17 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 18 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 19 N -0.93 -29.56 13.70 55.49 0.76 -28.80 16 20 Si 1.06 27.39 25.32 -169.99 -4.30 23.08 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.27 -6.80 6.51 56.52 0.37 -6.43 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 24 C 0.12 2.65 6.60 -8.37 -0.06 2.60 16 25 C 0.08 1.20 5.13 -3.68 -0.02 1.18 16 26 N -0.45 -5.62 6.09 -6.06 -0.04 -5.66 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.40 8.08 -51.92 -0.42 -0.02 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 32 H 0.15 1.48 7.67 -52.48 -0.40 1.07 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.28 7.05 -51.93 -0.37 0.92 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 37 H 0.04 0.84 7.93 -51.93 -0.41 0.43 16 38 H 0.04 0.97 7.36 -51.93 -0.38 0.58 16 39 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 40 H 0.06 1.33 3.65 -51.93 -0.19 1.14 16 41 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.15 2.20 4.20 -68.14 -0.29 1.91 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -36.19 345.38 -7.94 -44.13 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.83 Total: -0.44 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.28 Total: 4.11 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.46 Total: -60.12 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.29 Total: -15.97 kcal Atomic # 14 Polarization: 27.39 SS G_CDS: -4.30 Total: 23.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.19 -7.94 -44.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053162332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.055 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds