Wall clock time and date at job start Tue Mar 31 2020 11:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38609 * 119.54627 * 2 1 4 4 C 1.38577 * 119.34619 * 179.97438 * 3 2 1 5 5 C 1.38632 * 118.49055 * 359.74242 * 4 3 2 6 6 C 1.39268 * 119.06144 * 0.52004 * 5 4 3 7 7 C 1.48165 * 119.72364 * 179.75195 * 6 5 4 8 8 O 1.21517 * 120.00371 * 351.22595 * 7 6 5 9 9 N 1.34785 * 120.00005 * 171.22380 * 7 6 5 10 10 C 1.47118 * 121.06447 * 171.87990 * 9 7 6 11 11 C 1.53226 * 108.74395 * 127.71519 * 10 9 7 12 12 O 1.43136 * 109.34411 * 54.21601 * 11 10 9 13 13 C 1.42373 * 113.98671 * 300.24154 * 12 11 10 14 14 C 1.52917 * 114.28547 * 285.01271 * 13 12 11 15 15 N 1.47171 * 87.84636 * 271.73303 * 14 13 12 16 16 C 1.36938 * 135.99994 * 153.32699 * 15 14 13 17 17 H 1.08000 * 119.99914 * 14.01555 * 16 15 14 18 18 C 1.38812 * 120.00218 * 194.01258 * 16 15 14 19 19 N 1.31615 * 120.00435 * 199.91398 * 18 16 15 20 20 Si 1.86806 * 119.99756 * 19.91612 * 18 16 15 21 21 H 1.48499 * 109.46850 * 269.99989 * 20 18 16 22 22 H 1.48497 * 109.47052 * 29.99712 * 20 18 16 23 23 H 1.48499 * 109.47417 * 150.00029 * 20 18 16 24 24 C 1.47161 * 87.99867 * 333.58269 * 15 14 13 25 25 C 1.47366 * 121.06145 * 351.90436 * 9 7 6 26 26 N 1.31494 * 119.54905 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47364 * 269.98417 * 1 2 3 28 28 H 1.09010 * 109.47219 * 29.98688 * 1 2 3 29 29 H 1.09003 * 109.47330 * 149.98011 * 1 2 3 30 30 H 1.07998 * 120.32644 * 0.02562 * 3 2 1 31 31 H 1.08006 * 120.75650 * 179.97438 * 4 3 2 32 32 H 1.08011 * 120.47116 * 180.26902 * 5 4 3 33 33 H 1.08998 * 109.59118 * 247.49163 * 10 9 7 34 34 H 1.09000 * 109.59157 * 7.93531 * 10 9 7 35 35 H 1.09001 * 109.49354 * 174.17881 * 11 10 9 36 36 H 1.09002 * 109.49528 * 294.23277 * 11 10 9 37 37 H 1.09005 * 113.49170 * 156.98638 * 14 13 12 38 38 H 1.08996 * 113.54930 * 26.48733 * 14 13 12 39 39 H 0.96999 * 119.99600 * 354.96185 * 19 18 16 40 40 H 1.09007 * 113.48257 * 141.16362 * 24 15 14 41 41 H 1.08999 * 113.49258 * 271.66953 * 24 15 14 42 42 H 1.09003 * 109.74755 * 108.57217 * 25 9 7 43 43 H 1.08992 * 109.74921 * 347.84179 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 0.0005 5 6 4.2333 -0.0197 0.0065 6 6 3.4820 -1.1924 0.0007 7 6 4.1692 -2.5051 0.0015 8 8 5.3731 -2.5608 -0.1535 9 7 3.4588 -3.6375 0.1740 10 6 4.0832 -4.9586 0.0037 11 6 3.8036 -5.8002 1.2532 12 8 2.3933 -5.8349 1.4957 13 6 1.8105 -4.5530 1.7057 14 6 2.1066 -3.9445 3.0770 15 7 0.9123 -4.6405 3.5821 16 6 0.4914 -5.1224 4.7928 17 1 0.9996 -4.8256 5.6984 18 6 -0.5886 -5.9921 4.8562 19 7 -1.2408 -6.1502 5.9884 20 14 -1.1163 -6.9384 3.3344 21 1 -2.1187 -6.1436 2.5802 22 1 0.0666 -7.1891 2.4725 23 1 -1.7164 -8.2345 3.7407 24 6 0.3718 -4.5973 2.2140 25 6 2.0318 -3.5917 0.5389 26 7 2.1555 -1.1439 -0.0005 27 1 -0.3634 -0.0003 1.0277 28 1 -0.3634 0.8902 -0.5137 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6484 2.1399 0.0004 31 1 4.1318 2.1272 0.0001 32 1 5.3126 -0.0608 0.0115 33 1 3.6608 -5.4524 -0.8715 34 1 5.1592 -4.8406 -0.1243 35 1 4.1710 -6.8146 1.0983 36 1 4.3096 -5.3571 2.1110 37 1 2.0181 -2.8582 3.0986 38 1 3.0368 -4.3005 3.5197 39 1 -0.9233 -5.7160 6.7956 40 1 -0.1605 -5.5046 1.9284 41 1 -0.1932 -3.6904 1.9985 42 1 1.4240 -3.8995 -0.3120 43 1 1.7607 -2.5796 0.8391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053162332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:18 Heat of formation + Delta-G solvation = 29.848341 kcal Electronic energy + Delta-G solvation = -27651.627314 eV Core-core repulsion = 23892.461572 eV Total energy + Delta-G solvation = -3759.165742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.24611 -41.22995 -39.97535 -37.95047 -36.02689 -34.62492 -33.98916 -33.58557 -31.70669 -29.76302 -28.64967 -27.65238 -27.20803 -25.86100 -24.35515 -23.29307 -22.95169 -21.21103 -20.39245 -19.65865 -18.71371 -18.11299 -17.55957 -17.23762 -16.94746 -16.89489 -16.29288 -16.18842 -15.83968 -15.70369 -15.36119 -15.13877 -14.98771 -14.90931 -14.58340 -14.33786 -13.96001 -13.50607 -13.28618 -13.11352 -13.07820 -12.93899 -12.82850 -12.67514 -12.55821 -12.15975 -11.88062 -11.53791 -11.47498 -11.23541 -10.92616 -10.90315 -10.68042 -10.10692 -10.03422 -9.64244 -9.21909 -8.66355 -5.49246 -0.40101 0.20134 1.39829 1.55630 1.57426 1.71258 1.76945 2.51983 2.53556 2.75438 2.84791 2.88872 3.20782 3.39953 3.54339 3.70617 3.83751 3.88274 4.01118 4.08209 4.12321 4.23838 4.31514 4.41069 4.49082 4.52913 4.58027 4.59458 4.63694 4.69699 4.79600 4.82651 4.86112 4.91106 4.99685 5.07583 5.13668 5.19477 5.25153 5.35800 5.70889 5.93439 6.13165 6.23258 6.63531 6.66473 6.95050 7.30099 8.25892 8.84678 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.004722 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.228629 B = 5928.048297 C = 7007.265269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.112 3.888 3 C -0.137 4.137 4 C -0.070 4.070 5 C -0.126 4.126 6 C 0.056 3.944 7 C 0.570 3.430 8 O -0.566 6.566 9 N -0.595 5.595 10 C 0.079 3.921 11 C 0.045 3.955 12 O -0.365 6.365 13 C 0.074 3.926 14 C 0.103 3.897 15 N -0.644 5.644 16 C -0.299 4.299 17 H 0.040 0.960 18 C -0.070 4.070 19 N -0.958 5.958 20 Si 1.100 2.900 21 H -0.267 1.267 22 H -0.261 1.261 23 H -0.302 1.302 24 C 0.115 3.885 25 C 0.092 3.908 26 N -0.472 5.472 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.247 0.753 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 16.379 -19.599 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.096 4.096 5 C -0.147 4.147 6 C -0.080 4.080 7 C 0.358 3.642 8 O -0.445 6.445 9 N -0.326 5.326 10 C -0.043 4.043 11 C -0.031 4.031 12 O -0.284 6.284 13 C 0.032 3.968 14 C -0.023 4.023 15 N -0.373 5.373 16 C -0.426 4.426 17 H 0.058 0.942 18 C -0.263 4.263 19 N -0.602 5.602 20 Si 0.926 3.074 21 H -0.192 1.192 22 H -0.186 1.186 23 H -0.230 1.230 24 C -0.010 4.010 25 C -0.031 4.031 26 N -0.185 5.185 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.195 0.805 31 H 0.196 0.804 32 H 0.164 0.836 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.986 14.239 -20.019 25.541 hybrid contribution 1.975 1.571 1.642 3.011 sum 8.960 15.810 -18.377 25.845 Atomic orbital electron populations 1.20889 0.86497 1.05069 1.04075 1.22024 0.98583 0.88215 0.93969 1.22642 0.95092 1.00194 0.97700 1.22050 0.94850 0.98448 0.94223 1.22224 1.02306 0.92202 0.97971 1.20910 0.90400 0.93551 1.03119 1.18281 0.85811 0.83873 0.76193 1.90725 1.14302 1.87013 1.52463 1.48090 1.11799 1.05747 1.66974 1.22403 1.00767 0.82135 0.98953 1.23126 0.81401 1.02591 0.96028 1.87952 1.22342 1.26746 1.91329 1.22864 0.95507 0.84931 0.93508 1.22991 0.90558 0.96214 0.92526 1.45721 1.18474 1.67854 1.05201 1.19796 1.16102 1.23971 0.82765 0.94217 1.27023 0.95241 0.98213 1.05858 1.71046 1.37855 1.50349 1.00915 0.83342 0.76459 0.75439 0.72210 1.19247 1.18626 1.23034 1.22796 0.93662 1.00939 0.83609 1.23180 0.80093 1.03513 0.96307 1.67361 1.08114 1.30294 1.12767 0.89879 0.87590 0.90563 0.80509 0.80447 0.83601 0.88532 0.87688 0.85105 0.94139 0.92540 0.95099 0.94344 0.93142 0.89650 0.89271 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.17 71.24 0.72 -0.59 16 2 C 0.11 1.89 6.78 42.70 0.29 2.18 16 3 C -0.14 -1.59 9.75 22.44 0.22 -1.37 16 4 C -0.07 -0.87 10.17 22.45 0.23 -0.64 16 5 C -0.13 -2.47 9.63 22.61 0.22 -2.25 16 6 C 0.06 1.40 6.58 41.89 0.28 1.68 16 7 C 0.57 16.81 7.67 86.88 0.67 17.48 16 8 O -0.57 -18.81 15.84 -3.77 -0.06 -18.87 16 9 N -0.60 -16.96 3.03 -821.03 -2.49 -19.45 16 10 C 0.08 2.02 6.61 86.34 0.57 2.59 16 11 C 0.05 1.32 6.90 72.06 0.50 1.82 16 12 O -0.37 -13.88 10.53 -148.98 -1.57 -15.45 16 13 C 0.07 2.70 1.28 -11.01 -0.01 2.69 16 14 C 0.10 4.36 7.91 83.31 0.66 5.01 16 15 N -0.64 -33.01 3.54 -740.06 -2.62 -35.62 16 16 C -0.30 -18.24 10.99 84.03 0.92 -17.32 16 17 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.96 -62.97 13.70 21.65 0.30 -62.67 16 20 Si 1.10 55.43 25.32 68.60 1.74 57.17 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.26 -12.62 6.51 99.48 0.65 -11.97 16 23 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 24 C 0.11 4.80 6.60 83.22 0.55 5.35 16 25 C 0.09 2.66 5.13 86.14 0.44 3.10 16 26 N -0.47 -10.83 6.09 -173.08 -1.05 -11.88 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 0.65 8.08 -2.38 -0.02 0.63 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.15 2.78 7.67 -2.90 -0.02 2.76 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.57 7.05 -2.39 -0.02 2.56 16 35 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.04 1.29 7.31 -2.39 -0.02 1.27 16 37 H 0.06 2.23 7.93 -2.38 -0.02 2.21 16 38 H 0.03 1.37 7.36 -2.39 -0.02 1.35 16 39 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 40 H 0.05 2.21 3.65 -2.38 -0.01 2.20 16 41 H 0.09 3.11 8.09 -2.39 -0.02 3.09 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.15 4.31 4.20 -34.39 -0.14 4.16 16 Total: -1.00 -81.30 345.38 1.76 -79.54 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.80 Total: 11.34 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.71 Total: 15.89 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.86 Total: -129.62 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.63 Total: -34.31 kcal Atomic # 14 Polarization: 55.43 SS G_CDS: 1.74 Total: 57.17 kcal Total: -81.30 1.76 -79.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053162332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.389 kcal (2) G-P(sol) polarization free energy of solvation -81.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds