Wall clock time and date at job start Tue Mar 31 2020 12:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38397 * 120.85768 * 2 1 4 4 C 1.38318 * 119.30180 * 179.73108 * 3 2 1 5 5 N 1.31957 * 121.07929 * 0.55512 * 4 3 2 6 6 C 1.31664 * 121.88025 * 359.72296 * 5 4 3 7 7 C 1.39556 * 120.56688 * 359.97438 * 6 5 4 8 8 C 1.47837 * 120.55972 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00406 * 228.96809 * 8 7 6 10 10 N 1.34776 * 119.99888 * 48.96150 * 8 7 6 11 11 C 1.47129 * 121.05748 * 5.69749 * 10 8 7 12 12 C 1.53222 * 108.72817 * 127.76939 * 11 10 8 13 13 O 1.43110 * 109.34651 * 54.12706 * 12 11 10 14 14 C 1.42487 * 113.97877 * 300.04632 * 13 12 11 15 15 C 1.53465 * 113.76616 * 286.79120 * 14 13 12 16 16 N 1.47673 * 85.96971 * 268.71916 * 15 14 13 17 17 C 1.36934 * 134.45464 * 155.74894 * 16 15 14 18 18 H 1.08005 * 119.99678 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00344 * 359.94892 * 17 16 15 20 20 N 1.31627 * 119.99651 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00127 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47266 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47124 * 120.00000 * 21 19 17 24 24 H 1.48502 * 109.46887 * 239.99814 * 21 19 17 25 25 C 1.47679 * 91.08697 * 335.71050 * 16 15 14 26 26 C 1.47346 * 121.05345 * 185.41246 * 10 8 7 27 27 H 1.08996 * 109.47033 * 264.18545 * 1 2 3 28 28 H 1.08994 * 109.47173 * 144.17834 * 1 2 3 29 29 H 1.09002 * 109.46524 * 24.18061 * 1 2 3 30 30 H 1.07993 * 120.34716 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.45722 * 180.27816 * 4 3 2 32 32 H 1.08004 * 119.71054 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.59493 * 247.54005 * 11 10 8 34 34 H 1.09003 * 109.59096 * 7.99556 * 11 10 8 35 35 H 1.08997 * 109.49083 * 174.08727 * 12 11 10 36 36 H 1.08997 * 109.49127 * 294.14106 * 12 11 10 37 37 H 1.08997 * 113.79405 * 22.98237 * 15 14 13 38 38 H 1.09000 * 113.79252 * 154.45449 * 15 14 13 39 39 H 0.96996 * 119.99526 * 180.02562 * 20 19 17 40 40 H 1.09000 * 113.79038 * 270.03006 * 25 16 15 41 41 H 1.08998 * 113.89669 * 138.57902 * 25 16 15 42 42 H 1.08998 * 109.74938 * 348.03735 * 26 10 8 43 43 H 1.09002 * 109.74368 * 108.76056 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5995 1.1505 0.0057 5 7 4.2498 0.0023 0.0001 6 6 3.6197 -1.1537 -0.0056 7 6 2.2249 -1.2017 -0.0054 8 6 1.5175 -2.4999 -0.0113 9 8 0.6197 -2.6992 -0.8060 10 7 1.8683 -3.4624 0.8645 11 6 2.8643 -3.2051 1.9164 12 6 2.2692 -3.6137 3.2679 13 8 1.8137 -4.9684 3.1953 14 6 0.8114 -5.1901 2.2072 15 6 -0.5638 -4.6218 2.5828 16 7 -0.8351 -5.9482 3.1725 17 6 -1.6754 -6.4091 4.1505 18 1 -1.6847 -7.4590 4.4037 19 6 -2.5149 -5.5271 4.8168 20 7 -2.5029 -4.2474 4.5088 21 14 -3.6607 -6.1559 6.1514 22 1 -3.4829 -7.6220 6.3062 23 1 -3.3434 -5.4800 7.4351 24 1 -5.0672 -5.8655 5.7735 25 6 0.1622 -6.5783 2.2841 26 6 1.2618 -4.8038 0.8029 27 1 -0.3633 -0.1041 1.0223 28 1 -0.3633 -0.8332 -0.6014 29 1 -0.3632 0.9375 -0.4210 30 1 1.6967 2.1345 -0.0004 31 1 4.1560 2.0762 0.0102 32 1 4.1871 -2.0727 -0.0096 33 1 3.7625 -3.7908 1.7204 34 1 3.1133 -2.1441 1.9323 35 1 3.0317 -3.5274 4.0420 36 1 1.4308 -2.9601 3.5087 37 1 -0.5213 -3.8154 3.3149 38 1 -1.1916 -4.3857 1.7236 39 1 -3.0893 -3.6310 4.9747 40 1 -0.2497 -6.9243 1.3361 41 1 0.7821 -7.3271 2.7773 42 1 0.4023 -4.7890 0.1327 43 1 1.9969 -5.5242 0.4441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053200224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:20 Heat of formation + Delta-G solvation = 33.279176 kcal Electronic energy + Delta-G solvation = -27431.240115 eV Core-core repulsion = 23672.223145 eV Total energy + Delta-G solvation = -3759.016970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09105 -39.89676 -38.48460 -36.29545 -34.61157 -33.99545 -32.37097 -31.73143 -29.95750 -28.43332 -27.67935 -26.18371 -25.10738 -24.33071 -23.36089 -22.48376 -21.74290 -19.71667 -18.82769 -17.65876 -16.89809 -16.78318 -16.56908 -16.31701 -15.71269 -15.10743 -14.94093 -14.73694 -14.33302 -14.23967 -14.10427 -13.86527 -13.40811 -13.30551 -13.01952 -12.89106 -12.87203 -12.48813 -12.36142 -12.03207 -11.98055 -11.37206 -11.15963 -10.90345 -10.82288 -10.67897 -10.36490 -10.16701 -9.87680 -9.69611 -9.60462 -9.55705 -9.33439 -9.26120 -8.83754 -8.30206 -6.88512 -5.75879 -3.07985 0.55680 0.95333 2.58738 2.87105 3.39683 3.44800 3.47440 3.51969 4.02013 4.07450 4.32786 4.44337 4.47341 4.49057 4.78538 4.88516 4.98694 5.09562 5.12431 5.22916 5.27310 5.30564 5.34731 5.40778 5.55409 5.57713 5.63433 5.69293 5.79436 5.92917 5.95667 6.03403 6.15027 6.26761 6.36168 6.40167 6.47908 6.53501 6.98911 7.17940 7.31402 7.49515 7.61541 7.78978 7.97553 8.07432 9.04335 9.71100 10.57148 11.41370 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.003754 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.657178 B = 7456.221248 C = 7973.412989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 C -0.180 4.180 4 C 0.116 3.884 5 N -0.491 5.491 6 C 0.135 3.865 7 C -0.181 4.181 8 C 0.569 3.431 9 O -0.527 6.527 10 N -0.601 5.601 11 C 0.070 3.930 12 C 0.048 3.952 13 O -0.340 6.340 14 C 0.048 3.952 15 C 0.152 3.848 16 N -0.603 5.603 17 C -0.218 4.218 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.137 3.863 26 C 0.099 3.901 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.252 0.748 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 9.773 -8.908 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.005 3.995 3 C -0.200 4.200 4 C -0.040 4.040 5 N -0.200 5.200 6 C -0.024 4.024 7 C -0.186 4.186 8 C 0.356 3.644 9 O -0.404 6.404 10 N -0.334 5.334 11 C -0.053 4.053 12 C -0.030 4.030 13 O -0.258 6.258 14 C 0.007 3.993 15 C 0.026 3.974 16 N -0.329 5.329 17 C -0.345 4.345 18 H 0.100 0.900 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.010 3.990 26 C -0.023 4.023 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.603 9.533 -8.950 18.868 hybrid contribution -1.620 0.066 0.610 1.732 sum 11.983 9.599 -8.340 17.473 Atomic orbital electron populations 1.21134 0.89298 1.04767 1.04260 1.20433 0.97418 0.91317 0.90364 1.22056 0.95561 0.98630 1.03723 1.22929 0.91745 0.96398 0.92933 1.67714 1.40681 0.98231 1.13418 1.22973 0.90082 0.96670 0.92636 1.20846 0.95529 0.94341 1.07919 1.18042 0.82565 0.82975 0.80821 1.90759 1.29767 1.80305 1.39574 1.48082 1.42029 1.12522 1.30765 1.22607 0.91744 1.02267 0.88714 1.22854 0.99290 0.85649 0.95175 1.87939 1.55705 1.25488 1.56655 1.23615 0.89793 1.00332 0.85608 1.22683 0.87679 0.91354 0.95689 1.45785 1.45025 1.03963 1.38146 1.19052 1.13287 0.93348 1.08834 0.90043 1.24763 0.99978 0.95559 1.00127 1.69830 1.41479 1.01676 1.44027 0.86037 0.80429 0.77884 0.81366 1.20410 1.21736 1.21786 1.22484 0.89643 0.92357 0.94487 1.22240 0.99455 0.81621 0.99034 0.89826 0.88347 0.90798 0.84098 0.82316 0.82250 0.90234 0.89279 0.88000 0.92133 0.90661 0.94838 0.93796 0.93200 0.92541 0.87786 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.60 36.01 0.35 -1.28 16 2 C 0.01 0.15 5.95 -103.91 -0.62 -0.46 16 3 C -0.18 -1.64 9.78 -39.49 -0.39 -2.03 16 4 C 0.12 1.04 11.17 -17.47 -0.20 0.85 16 5 N -0.49 -5.40 10.35 -12.91 -0.13 -5.53 16 6 C 0.13 1.49 8.81 -17.13 -0.15 1.34 16 7 C -0.18 -2.30 4.81 -104.82 -0.50 -2.81 16 8 C 0.57 8.64 6.81 -12.33 -0.08 8.56 16 9 O -0.53 -9.57 14.44 5.32 0.08 -9.49 16 10 N -0.60 -8.71 3.03 -173.81 -0.53 -9.24 16 11 C 0.07 0.84 5.45 -3.58 -0.02 0.82 16 12 C 0.05 0.71 6.88 37.27 0.26 0.97 16 13 O -0.34 -6.44 10.52 -35.23 -0.37 -6.81 16 14 C 0.05 0.92 1.21 -90.53 -0.11 0.81 16 15 C 0.15 3.64 6.64 -3.17 -0.02 3.62 16 16 N -0.60 -15.74 3.70 -180.32 -0.67 -16.41 16 17 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 18 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.66 11.39 55.49 0.63 -27.03 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.14 2.82 8.33 -3.18 -0.03 2.79 16 26 C 0.10 1.58 5.76 -3.86 -0.02 1.55 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.10 1.40 5.87 -51.93 -0.31 1.10 16 29 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.16 1.49 7.40 -52.48 -0.39 1.11 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.95 5.31 -51.93 -0.28 0.67 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.03 7.20 -51.93 -0.37 0.65 16 37 H 0.08 2.02 6.31 -51.93 -0.33 1.69 16 38 H 0.03 0.85 7.92 -51.93 -0.41 0.43 16 39 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 1.78 6.86 -51.93 -0.36 1.43 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -34.55 347.71 -8.35 -42.90 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.78 Total: 0.94 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -1.79 Total: 8.03 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.70 Total: -58.20 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.29 Total: -16.30 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.55 -8.35 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053200224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.182 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds