Wall clock time and date at job start Tue Mar 31 2020 12:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38397 * 120.85768 * 2 1 4 4 C 1.38318 * 119.30180 * 179.73108 * 3 2 1 5 5 N 1.31957 * 121.07929 * 0.55512 * 4 3 2 6 6 C 1.31664 * 121.88025 * 359.72296 * 5 4 3 7 7 C 1.39556 * 120.56688 * 359.97438 * 6 5 4 8 8 C 1.47837 * 120.55972 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00406 * 228.96809 * 8 7 6 10 10 N 1.34776 * 119.99888 * 48.96150 * 8 7 6 11 11 C 1.47129 * 121.05748 * 5.69749 * 10 8 7 12 12 C 1.53222 * 108.72817 * 127.76939 * 11 10 8 13 13 O 1.43110 * 109.34651 * 54.12706 * 12 11 10 14 14 C 1.42487 * 113.97877 * 300.04632 * 13 12 11 15 15 C 1.53465 * 113.76616 * 286.79120 * 14 13 12 16 16 N 1.47673 * 85.96971 * 268.71916 * 15 14 13 17 17 C 1.36934 * 134.45464 * 155.74894 * 16 15 14 18 18 H 1.08005 * 119.99678 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00344 * 359.94892 * 17 16 15 20 20 N 1.31627 * 119.99651 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00127 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47266 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47124 * 120.00000 * 21 19 17 24 24 H 1.48502 * 109.46887 * 239.99814 * 21 19 17 25 25 C 1.47679 * 91.08697 * 335.71050 * 16 15 14 26 26 C 1.47346 * 121.05345 * 185.41246 * 10 8 7 27 27 H 1.08996 * 109.47033 * 264.18545 * 1 2 3 28 28 H 1.08994 * 109.47173 * 144.17834 * 1 2 3 29 29 H 1.09002 * 109.46524 * 24.18061 * 1 2 3 30 30 H 1.07993 * 120.34716 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.45722 * 180.27816 * 4 3 2 32 32 H 1.08004 * 119.71054 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.59493 * 247.54005 * 11 10 8 34 34 H 1.09003 * 109.59096 * 7.99556 * 11 10 8 35 35 H 1.08997 * 109.49083 * 174.08727 * 12 11 10 36 36 H 1.08997 * 109.49127 * 294.14106 * 12 11 10 37 37 H 1.08997 * 113.79405 * 22.98237 * 15 14 13 38 38 H 1.09000 * 113.79252 * 154.45449 * 15 14 13 39 39 H 0.96996 * 119.99526 * 180.02562 * 20 19 17 40 40 H 1.09000 * 113.79038 * 270.03006 * 25 16 15 41 41 H 1.08998 * 113.89669 * 138.57902 * 25 16 15 42 42 H 1.08998 * 109.74938 * 348.03735 * 26 10 8 43 43 H 1.09002 * 109.74368 * 108.76056 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5995 1.1505 0.0057 5 7 4.2498 0.0023 0.0001 6 6 3.6197 -1.1537 -0.0056 7 6 2.2249 -1.2017 -0.0054 8 6 1.5175 -2.4999 -0.0113 9 8 0.6197 -2.6992 -0.8060 10 7 1.8683 -3.4624 0.8645 11 6 2.8643 -3.2051 1.9164 12 6 2.2692 -3.6137 3.2679 13 8 1.8137 -4.9684 3.1953 14 6 0.8114 -5.1901 2.2072 15 6 -0.5638 -4.6218 2.5828 16 7 -0.8351 -5.9482 3.1725 17 6 -1.6754 -6.4091 4.1505 18 1 -1.6847 -7.4590 4.4037 19 6 -2.5149 -5.5271 4.8168 20 7 -2.5029 -4.2474 4.5088 21 14 -3.6607 -6.1559 6.1514 22 1 -3.4829 -7.6220 6.3062 23 1 -3.3434 -5.4800 7.4351 24 1 -5.0672 -5.8655 5.7735 25 6 0.1622 -6.5783 2.2841 26 6 1.2618 -4.8038 0.8029 27 1 -0.3633 -0.1041 1.0223 28 1 -0.3633 -0.8332 -0.6014 29 1 -0.3632 0.9375 -0.4210 30 1 1.6967 2.1345 -0.0004 31 1 4.1560 2.0762 0.0102 32 1 4.1871 -2.0727 -0.0096 33 1 3.7625 -3.7908 1.7204 34 1 3.1133 -2.1441 1.9323 35 1 3.0317 -3.5274 4.0420 36 1 1.4308 -2.9601 3.5087 37 1 -0.5213 -3.8154 3.3149 38 1 -1.1916 -4.3857 1.7236 39 1 -3.0893 -3.6310 4.9747 40 1 -0.2497 -6.9243 1.3361 41 1 0.7821 -7.3271 2.7773 42 1 0.4023 -4.7890 0.1327 43 1 1.9969 -5.5242 0.4441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053200224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:19 Heat of formation + Delta-G solvation = 8.679645 kcal Electronic energy + Delta-G solvation = -27432.306831 eV Core-core repulsion = 23672.223145 eV Total energy + Delta-G solvation = -3760.083686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16232 -41.13408 -39.74109 -37.83472 -35.91024 -34.88843 -34.32954 -32.74004 -31.38423 -29.60858 -28.99213 -27.74944 -26.88613 -25.31282 -24.76304 -23.56648 -23.13604 -21.01133 -20.24030 -18.86261 -18.71744 -17.82973 -17.58309 -17.33741 -17.17543 -16.81713 -16.33497 -15.85228 -15.75512 -15.46419 -15.23046 -15.05293 -14.87016 -14.83662 -14.28893 -14.08238 -13.91834 -13.71173 -13.50340 -13.38286 -13.11691 -12.93310 -12.86409 -12.80106 -12.53254 -12.12623 -11.94394 -11.74997 -11.53149 -11.17433 -10.99762 -10.84794 -10.56218 -10.46214 -10.16177 -9.60916 -8.96917 -7.93335 -5.27628 -0.27635 0.14582 1.42523 1.43992 1.46169 1.54683 1.77627 2.43842 2.59878 2.71354 3.19131 3.24457 3.32999 3.49695 3.59950 3.61879 3.72434 3.76321 3.90313 4.01904 4.07330 4.24532 4.37089 4.40992 4.52022 4.56471 4.58752 4.62018 4.68656 4.69530 4.77176 4.80795 4.82384 4.89513 5.08111 5.10802 5.20174 5.24659 5.27130 5.43646 5.59572 5.86485 6.17281 6.30088 6.83038 6.86519 6.93195 7.56402 8.49344 9.23637 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.003754 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.657178 B = 7456.221248 C = 7973.412989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.006 4.006 3 C -0.171 4.171 4 C 0.122 3.878 5 N -0.504 5.504 6 C 0.139 3.861 7 C -0.201 4.201 8 C 0.567 3.433 9 O -0.567 6.567 10 N -0.604 5.604 11 C 0.078 3.922 12 C 0.042 3.958 13 O -0.358 6.358 14 C 0.077 3.923 15 C 0.152 3.848 16 N -0.635 5.635 17 C -0.231 4.231 18 H 0.088 0.912 19 C -0.069 4.069 20 N -0.957 5.957 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.136 3.864 26 C 0.108 3.892 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.172 0.828 31 H 0.196 0.804 32 H 0.177 0.823 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.028 0.972 37 H 0.038 0.962 38 H 0.010 0.990 39 H 0.247 0.753 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.960 10.386 -9.119 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.014 4.014 3 C -0.190 4.190 4 C -0.034 4.034 5 N -0.213 5.213 6 C -0.019 4.019 7 C -0.207 4.207 8 C 0.356 3.644 9 O -0.447 6.447 10 N -0.336 5.336 11 C -0.043 4.043 12 C -0.035 4.035 13 O -0.276 6.276 14 C 0.035 3.965 15 C 0.026 3.974 16 N -0.361 5.361 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.262 4.262 20 N -0.606 5.606 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.218 1.218 24 H -0.220 1.220 25 C 0.011 3.989 26 C -0.016 4.016 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.190 0.810 31 H 0.213 0.787 32 H 0.194 0.806 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.152 0.848 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.028 0.972 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.249 10.124 -9.167 21.226 hybrid contribution -2.390 -0.048 0.673 2.483 sum 13.859 10.076 -8.494 19.124 Atomic orbital electron populations 1.21046 0.90153 1.04886 1.03006 1.20592 0.97182 0.92279 0.91355 1.22368 0.95797 0.98719 1.02138 1.23576 0.91934 0.97120 0.90737 1.67815 1.40901 0.98678 1.13864 1.23157 0.89176 0.97616 0.91946 1.20741 0.96357 0.93156 1.10400 1.18494 0.82006 0.83744 0.80184 1.90735 1.31595 1.81060 1.41288 1.48175 1.42256 1.11898 1.31254 1.22725 0.91673 1.03959 0.85987 1.23113 0.99012 0.83178 0.98151 1.87896 1.55027 1.27780 1.56942 1.23119 0.87670 0.98212 0.87514 1.22514 0.91072 0.90056 0.93775 1.46189 1.45557 1.05597 1.38795 1.19493 1.13377 0.93745 1.09348 0.89463 1.25658 1.01964 0.95785 1.02746 1.70045 1.42370 1.02868 1.45360 0.84967 0.77839 0.78111 0.78162 1.18631 1.21823 1.21988 1.22719 0.88468 0.93372 0.94378 1.22036 1.00060 0.83384 0.96081 0.91174 0.91449 0.88093 0.81046 0.78675 0.80640 0.86814 0.87558 0.84800 0.95378 0.94397 0.97204 0.94435 0.90931 0.91320 0.89500 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.60 71.24 0.68 -2.59 16 2 C -0.01 -0.13 5.95 -19.40 -0.12 -0.25 16 3 C -0.17 -2.63 9.78 22.33 0.22 -2.42 16 4 C 0.12 1.75 11.17 84.69 0.95 2.70 16 5 N -0.50 -9.48 10.35 -194.75 -2.01 -11.49 16 6 C 0.14 2.76 8.81 85.04 0.75 3.51 16 7 C -0.20 -4.97 4.81 -19.99 -0.10 -5.06 16 8 C 0.57 17.44 6.81 86.78 0.59 18.03 16 9 O -0.57 -21.60 14.44 -3.88 -0.06 -21.66 16 10 N -0.60 -17.16 3.03 -822.08 -2.49 -19.65 16 11 C 0.08 1.72 5.45 86.33 0.47 2.20 16 12 C 0.04 1.23 6.88 72.06 0.50 1.72 16 13 O -0.36 -13.35 10.52 -148.98 -1.57 -14.91 16 14 C 0.08 2.96 1.21 -10.64 -0.01 2.95 16 15 C 0.15 7.70 6.64 86.31 0.57 8.27 16 16 N -0.64 -34.08 3.70 -729.29 -2.70 -36.78 16 17 C -0.23 -13.47 10.70 84.03 0.90 -12.57 16 18 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 20 N -0.96 -60.03 11.39 21.65 0.25 -59.78 16 21 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 C 0.14 5.55 8.33 86.30 0.72 6.27 16 26 C 0.11 3.36 5.76 86.04 0.50 3.86 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.07 5.87 -2.39 -0.01 2.06 16 29 H 0.10 1.79 8.07 -2.39 -0.02 1.77 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.18 2.76 7.40 -2.91 -0.02 2.74 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.11 2.02 5.31 -2.39 -0.01 2.01 16 35 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.03 0.99 7.20 -2.39 -0.02 0.97 16 37 H 0.04 2.18 6.31 -2.39 -0.02 2.17 16 38 H 0.01 0.55 7.92 -2.39 -0.02 0.53 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 41 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.09 3.05 6.86 -2.39 -0.02 3.04 16 43 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -79.68 347.71 1.56 -78.12 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.03 Total: 14.07 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 7.08 Total: 23.01 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -6.96 Total: -127.71 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.62 Total: -36.57 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -79.68 1.56 -78.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053200224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.799 kcal (2) G-P(sol) polarization free energy of solvation -79.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds