Wall clock time and date at job start Tue Mar 31 2020 11:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38605 * 119.54932 * 2 1 4 4 C 1.38581 * 119.35081 * 179.97438 * 3 2 1 5 5 C 1.38626 * 118.48870 * 359.74466 * 4 3 2 6 6 C 1.39274 * 119.06239 * 0.47896 * 5 4 3 7 7 C 1.48170 * 119.72588 * 179.79722 * 6 5 4 8 8 O 1.21519 * 119.99602 * 359.71715 * 7 6 5 9 9 N 1.34776 * 119.99993 * 179.72138 * 7 6 5 10 10 C 1.46497 * 119.99867 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.77060 * 328.52704 * 10 9 7 12 12 C 1.55056 * 110.87256 * 92.28594 * 10 9 7 13 13 O 1.44607 * 103.66561 * 81.64341 * 12 10 9 14 14 C 1.42829 * 106.74133 * 39.08024 * 13 12 10 15 15 C 1.52650 * 115.96887 * 202.49452 * 14 13 12 16 16 N 1.47222 * 87.78268 * 218.40479 * 15 14 13 17 17 C 1.36937 * 135.96722 * 206.40899 * 16 15 14 18 18 H 1.07997 * 119.99687 * 350.61132 * 17 16 15 19 19 C 1.38810 * 119.99916 * 170.61092 * 17 16 15 20 20 N 1.31618 * 119.99794 * 157.31820 * 19 17 16 21 21 Si 1.86804 * 120.00020 * 337.31591 * 19 17 16 22 22 H 1.48500 * 109.46862 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00095 * 21 19 17 24 24 H 1.48491 * 109.47169 * 330.00249 * 21 19 17 25 25 C 1.47222 * 88.06543 * 26.66831 * 16 15 14 26 26 C 1.53327 * 108.32685 * 334.32125 * 14 13 12 27 27 N 1.31491 * 119.54819 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46983 * 270.02603 * 1 2 3 29 29 H 1.09003 * 109.46855 * 30.02337 * 1 2 3 30 30 H 1.08994 * 109.46897 * 150.02165 * 1 2 3 31 31 H 1.08000 * 120.32257 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.75513 * 179.97438 * 4 3 2 33 33 H 1.08004 * 120.47046 * 180.26473 * 5 4 3 34 34 H 0.96997 * 119.99712 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.58661 * 200.18458 * 12 10 9 36 36 H 1.09000 * 110.58374 * 323.10073 * 12 10 9 37 37 H 1.08998 * 113.50312 * 103.67510 * 15 14 13 38 38 H 1.09003 * 113.55063 * 333.14249 * 15 14 13 39 39 H 0.96997 * 120.00266 * 3.59850 * 20 19 17 40 40 H 1.09003 * 113.50436 * 88.05945 * 25 16 15 41 41 H 1.09001 * 113.50110 * 218.60341 * 25 16 15 42 42 H 1.09001 * 110.56489 * 120.18153 * 26 14 13 43 43 H 1.09003 * 110.55841 * 243.02579 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5764 1.2010 0.0005 5 6 4.2334 -0.0197 0.0065 6 6 3.4821 -1.1924 0.0015 7 6 4.1692 -2.5052 0.0032 8 8 5.3834 -2.5554 0.0037 9 7 3.4476 -3.6435 0.0041 10 6 4.1270 -4.9414 0.0052 11 1 5.0765 -4.8812 -0.5269 12 6 4.3319 -5.4564 1.4533 13 8 3.0553 -6.0464 1.7899 14 6 2.5893 -6.7155 0.6173 15 6 1.0832 -6.9511 0.5361 16 7 1.3785 -8.2621 -0.0652 17 6 0.7342 -9.1246 -0.9115 18 1 -0.2994 -8.9531 -1.1731 19 6 1.4098 -10.2194 -1.4330 20 7 0.7359 -11.2668 -1.8587 21 14 3.2752 -10.2061 -1.5306 22 1 3.8404 -10.7680 -0.2776 23 1 3.7162 -11.0291 -2.6854 24 1 3.7517 -8.8108 -1.7065 25 6 2.6668 -8.2428 0.6470 26 6 3.2201 -6.0400 -0.6061 27 7 2.1555 -1.1439 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6486 2.1399 -0.0004 32 1 4.1319 2.1271 0.0001 33 1 5.3127 -0.0608 0.0114 34 1 2.4785 -3.6033 0.0040 35 1 5.1213 -6.2074 1.4849 36 1 4.5610 -4.6294 2.1254 37 1 0.5722 -6.2673 -0.1417 38 1 0.5998 -7.0188 1.5107 39 1 -0.2340 -11.2532 -1.8566 40 1 2.6142 -8.6612 1.6521 41 1 3.4925 -8.6492 0.0628 42 1 3.8149 -6.7552 -1.1742 43 1 2.4506 -5.5942 -1.2365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053741377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:01 Heat of formation + Delta-G solvation = 27.540988 kcal Electronic energy + Delta-G solvation = -26397.942206 eV Core-core repulsion = 22638.676409 eV Total energy + Delta-G solvation = -3759.265797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02499 -40.29619 -38.96718 -36.65775 -34.52587 -33.36947 -32.90430 -32.35501 -30.42686 -28.45472 -28.06973 -25.77524 -25.46980 -25.04998 -22.72109 -21.75706 -21.40789 -20.64499 -19.08124 -18.32036 -17.48523 -17.03450 -16.53786 -16.17815 -15.75546 -15.45722 -15.20173 -15.07382 -14.72914 -14.48969 -14.32374 -13.84066 -13.53043 -13.46160 -13.22690 -12.85797 -12.69849 -12.60704 -12.32297 -12.28583 -11.63717 -11.51322 -11.39793 -11.22924 -10.93218 -10.66182 -10.59939 -10.44777 -10.32892 -9.85905 -9.77814 -9.41473 -9.33276 -9.14570 -8.74792 -8.61968 -7.20378 -6.38561 -3.23550 0.31058 0.82490 2.49068 2.89351 3.39592 3.44346 3.52615 3.62201 3.71992 4.07619 4.27612 4.42830 4.55977 4.57808 4.59154 4.67985 4.81638 4.91030 4.93495 5.00855 5.10761 5.17291 5.21019 5.25459 5.38504 5.47635 5.60606 5.64876 5.72647 5.73413 5.76663 5.97591 6.13476 6.18497 6.20514 6.31048 6.33430 6.36757 6.38758 6.56452 7.09862 7.24080 7.34228 7.54429 8.01476 8.22850 8.93769 9.48936 10.36434 11.12889 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.003177 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.002967 B = 8810.525801 C = 9478.736303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.152 4.152 4 C -0.079 4.079 5 C -0.119 4.119 6 C 0.086 3.914 7 C 0.571 3.429 8 O -0.537 6.537 9 N -0.691 5.691 10 C 0.105 3.895 11 H 0.109 0.891 12 C 0.039 3.961 13 O -0.358 6.358 14 C 0.056 3.944 15 C 0.133 3.867 16 N -0.615 5.615 17 C -0.311 4.311 18 H 0.080 0.920 19 C -0.018 4.018 20 N -0.920 5.920 21 Si 1.063 2.937 22 H -0.292 1.292 23 H -0.295 1.295 24 H -0.285 1.285 25 C 0.093 3.907 26 C -0.123 4.123 27 N -0.458 5.458 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.415 0.585 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.263 0.737 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 26.929 4.357 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.012 4.012 3 C -0.172 4.172 4 C -0.105 4.105 5 C -0.140 4.140 6 C -0.052 4.052 7 C 0.356 3.644 8 O -0.413 6.413 9 N -0.342 5.342 10 C 0.000 4.000 11 H 0.127 0.873 12 C -0.039 4.039 13 O -0.275 6.275 14 C 0.015 3.985 15 C 0.006 3.994 16 N -0.346 5.346 17 C -0.437 4.437 18 H 0.098 0.902 19 C -0.218 4.218 20 N -0.561 5.561 21 Si 0.895 3.105 22 H -0.220 1.220 23 H -0.223 1.223 24 H -0.212 1.212 25 C -0.032 4.032 26 C -0.161 4.161 27 N -0.170 5.170 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.117 0.883 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.395 24.979 3.946 26.084 hybrid contribution -1.253 1.700 0.386 2.146 sum 5.142 26.678 4.332 27.513 Atomic orbital electron populations 1.20768 0.88122 1.03936 1.03527 1.21361 0.97305 0.87839 0.94699 1.22211 0.95056 0.99489 1.00411 1.21626 0.94436 0.98319 0.96090 1.22119 1.02337 0.91779 0.97799 1.21124 0.89679 0.94100 1.00288 1.17897 0.86496 0.83328 0.76662 1.90782 1.12921 1.87081 1.50564 1.45811 1.11330 1.04526 1.72546 1.22696 0.97505 0.82280 0.97481 0.87270 1.23945 0.87533 0.97433 0.94988 1.88783 1.34228 1.70611 1.33896 1.23695 0.97431 0.93050 0.84317 1.22416 0.91594 0.88275 0.97089 1.45572 1.18830 1.19097 1.51062 1.19923 0.95396 1.05545 1.22808 0.90218 1.25733 1.06609 0.91516 0.97967 1.70923 1.08852 1.25553 1.50795 0.83799 0.75800 0.74657 0.76219 1.21997 1.22266 1.21218 1.23098 0.90908 0.92631 0.96597 1.22800 0.99439 0.96430 0.97460 1.67403 1.08540 1.30242 1.10837 0.90026 0.90489 0.89945 0.84228 0.83983 0.83384 0.74833 0.90981 0.89107 0.93228 0.93434 0.92645 0.93229 0.93369 0.88308 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.17 36.01 0.37 -0.29 16 2 C 0.13 1.13 6.78 -82.60 -0.56 0.57 16 3 C -0.15 -1.03 9.75 -39.32 -0.38 -1.41 16 4 C -0.08 -0.55 10.17 -39.31 -0.40 -0.95 16 5 C -0.12 -1.15 9.63 -39.05 -0.38 -1.52 16 6 C 0.09 1.02 6.75 -83.01 -0.56 0.46 16 7 C 0.57 7.80 7.81 -12.18 -0.10 7.71 16 8 O -0.54 -8.40 15.97 5.35 0.09 -8.32 16 9 N -0.69 -9.19 5.14 -52.56 -0.27 -9.46 16 10 C 0.11 1.47 3.51 -65.78 -0.23 1.24 16 11 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16 12 C 0.04 0.55 7.42 38.24 0.28 0.84 16 13 O -0.36 -6.12 11.32 -35.23 -0.40 -6.52 16 14 C 0.06 1.03 1.66 -90.66 -0.15 0.88 16 15 C 0.13 2.70 8.20 -8.04 -0.07 2.64 16 16 N -0.62 -15.23 3.53 -184.60 -0.65 -15.88 16 17 C -0.31 -8.91 10.96 -15.06 -0.17 -9.08 16 18 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 19 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 20 N -0.92 -28.84 13.70 55.49 0.76 -28.08 16 21 Si 1.06 26.48 25.33 -169.99 -4.31 22.17 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.42 5.50 56.52 0.31 -6.11 16 25 C 0.09 2.04 6.69 -7.88 -0.05 1.99 16 26 C -0.12 -1.98 6.11 -25.49 -0.16 -2.14 16 27 N -0.46 -5.18 9.45 -6.05 -0.06 -5.24 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.15 1.33 7.64 -52.48 -0.40 0.93 16 34 H 0.41 5.37 7.95 -40.82 -0.32 5.04 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.07 3.52 -51.93 -0.18 0.88 16 42 H 0.10 1.68 6.78 -51.93 -0.35 1.32 16 43 H 0.09 1.42 7.70 -51.93 -0.40 1.02 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -34.03 354.14 -8.07 -42.10 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.93 Total: 3.60 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.64 Total: 0.30 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.22 Total: -58.66 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.31 Total: -14.84 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -4.31 Total: 22.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.03 -8.07 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053741377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.640 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds