Wall clock time and date at job start Tue Mar 31 2020 11:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38605 * 119.54932 * 2 1 4 4 C 1.38581 * 119.35081 * 179.97438 * 3 2 1 5 5 C 1.38626 * 118.48870 * 359.74466 * 4 3 2 6 6 C 1.39274 * 119.06239 * 0.47896 * 5 4 3 7 7 C 1.48170 * 119.72588 * 179.79722 * 6 5 4 8 8 O 1.21519 * 119.99602 * 359.71715 * 7 6 5 9 9 N 1.34776 * 119.99993 * 179.72138 * 7 6 5 10 10 C 1.46497 * 119.99867 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.77060 * 328.52704 * 10 9 7 12 12 C 1.55056 * 110.87256 * 92.28594 * 10 9 7 13 13 O 1.44607 * 103.66561 * 81.64341 * 12 10 9 14 14 C 1.42829 * 106.74133 * 39.08024 * 13 12 10 15 15 C 1.52650 * 115.96887 * 202.49452 * 14 13 12 16 16 N 1.47222 * 87.78268 * 218.40479 * 15 14 13 17 17 C 1.36937 * 135.96722 * 206.40899 * 16 15 14 18 18 H 1.07997 * 119.99687 * 350.61132 * 17 16 15 19 19 C 1.38810 * 119.99916 * 170.61092 * 17 16 15 20 20 N 1.31618 * 119.99794 * 157.31820 * 19 17 16 21 21 Si 1.86804 * 120.00020 * 337.31591 * 19 17 16 22 22 H 1.48500 * 109.46862 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00095 * 21 19 17 24 24 H 1.48491 * 109.47169 * 330.00249 * 21 19 17 25 25 C 1.47222 * 88.06543 * 26.66831 * 16 15 14 26 26 C 1.53327 * 108.32685 * 334.32125 * 14 13 12 27 27 N 1.31491 * 119.54819 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46983 * 270.02603 * 1 2 3 29 29 H 1.09003 * 109.46855 * 30.02337 * 1 2 3 30 30 H 1.08994 * 109.46897 * 150.02165 * 1 2 3 31 31 H 1.08000 * 120.32257 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.75513 * 179.97438 * 4 3 2 33 33 H 1.08004 * 120.47046 * 180.26473 * 5 4 3 34 34 H 0.96997 * 119.99712 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.58661 * 200.18458 * 12 10 9 36 36 H 1.09000 * 110.58374 * 323.10073 * 12 10 9 37 37 H 1.08998 * 113.50312 * 103.67510 * 15 14 13 38 38 H 1.09003 * 113.55063 * 333.14249 * 15 14 13 39 39 H 0.96997 * 120.00266 * 3.59850 * 20 19 17 40 40 H 1.09003 * 113.50436 * 88.05945 * 25 16 15 41 41 H 1.09001 * 113.50110 * 218.60341 * 25 16 15 42 42 H 1.09001 * 110.56489 * 120.18153 * 26 14 13 43 43 H 1.09003 * 110.55841 * 243.02579 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5764 1.2010 0.0005 5 6 4.2334 -0.0197 0.0065 6 6 3.4821 -1.1924 0.0015 7 6 4.1692 -2.5052 0.0032 8 8 5.3834 -2.5554 0.0037 9 7 3.4476 -3.6435 0.0041 10 6 4.1270 -4.9414 0.0052 11 1 5.0765 -4.8812 -0.5269 12 6 4.3319 -5.4564 1.4533 13 8 3.0553 -6.0464 1.7899 14 6 2.5893 -6.7155 0.6173 15 6 1.0832 -6.9511 0.5361 16 7 1.3785 -8.2621 -0.0652 17 6 0.7342 -9.1246 -0.9115 18 1 -0.2994 -8.9531 -1.1731 19 6 1.4098 -10.2194 -1.4330 20 7 0.7359 -11.2668 -1.8587 21 14 3.2752 -10.2061 -1.5306 22 1 3.8404 -10.7680 -0.2776 23 1 3.7162 -11.0291 -2.6854 24 1 3.7517 -8.8108 -1.7065 25 6 2.6668 -8.2428 0.6470 26 6 3.2201 -6.0400 -0.6061 27 7 2.1555 -1.1439 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6486 2.1399 -0.0004 32 1 4.1319 2.1271 0.0001 33 1 5.3127 -0.0608 0.0114 34 1 2.4785 -3.6033 0.0040 35 1 5.1213 -6.2074 1.4849 36 1 4.5610 -4.6294 2.1254 37 1 0.5722 -6.2673 -0.1417 38 1 0.5998 -7.0188 1.5107 39 1 -0.2340 -11.2532 -1.8566 40 1 2.6142 -8.6612 1.6521 41 1 3.4925 -8.6492 0.0628 42 1 3.8149 -6.7552 -1.1742 43 1 2.4506 -5.5942 -1.2365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053741377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:00 Heat of formation + Delta-G solvation = 2.166105 kcal Electronic energy + Delta-G solvation = -26399.042543 eV Core-core repulsion = 22638.676409 eV Total energy + Delta-G solvation = -3760.366134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02417 -41.43496 -40.02426 -38.18281 -35.67520 -34.52734 -33.97923 -33.60981 -31.62849 -30.14554 -28.68025 -27.38300 -27.13243 -25.87173 -23.51714 -23.30689 -22.55542 -21.68324 -20.75037 -19.50724 -19.21461 -18.06835 -17.44190 -17.30411 -16.84612 -16.58960 -16.44835 -16.34654 -16.11620 -15.65693 -15.33038 -15.10458 -15.01841 -14.62994 -14.29236 -14.03050 -13.87075 -13.45451 -13.25563 -13.09860 -12.90133 -12.85745 -12.83688 -12.70927 -12.58746 -12.26432 -12.19507 -11.62783 -11.44573 -11.33155 -10.93870 -10.80111 -10.57557 -10.54944 -10.14789 -9.91911 -9.28435 -8.70169 -5.47824 -0.39049 0.22700 1.38368 1.48838 1.61531 1.66922 1.93259 2.52154 2.64202 2.80882 2.91174 2.99679 3.24687 3.39874 3.47083 3.52782 3.69919 3.85835 3.89234 4.01989 4.09308 4.26873 4.42667 4.46558 4.57680 4.60196 4.61505 4.63516 4.66336 4.72433 4.76523 4.76692 4.82215 4.86899 4.93947 5.10754 5.13101 5.17010 5.21497 5.32455 5.65199 5.92142 5.93945 6.30847 6.65602 6.77164 7.03020 7.30512 8.25353 8.83643 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.003177 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.002967 B = 8810.525801 C = 9478.736303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 C -0.138 4.138 4 C -0.074 4.074 5 C -0.127 4.127 6 C 0.056 3.944 7 C 0.571 3.429 8 O -0.563 6.563 9 N -0.691 5.691 10 C 0.116 3.884 11 H 0.117 0.883 12 C 0.037 3.963 13 O -0.365 6.365 14 C 0.082 3.918 15 C 0.129 3.871 16 N -0.642 5.642 17 C -0.299 4.299 18 H 0.050 0.950 19 C -0.074 4.074 20 N -0.956 5.956 21 Si 1.098 2.902 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.249 1.249 25 C 0.083 3.917 26 C -0.120 4.120 27 N -0.482 5.482 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.148 0.852 34 H 0.416 0.584 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.249 0.751 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 30.524 4.959 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.030 4.030 3 C -0.158 4.158 4 C -0.099 4.099 5 C -0.148 4.148 6 C -0.081 4.081 7 C 0.357 3.643 8 O -0.442 6.442 9 N -0.341 5.341 10 C 0.010 3.990 11 H 0.135 0.865 12 C -0.041 4.041 13 O -0.282 6.282 14 C 0.040 3.960 15 C 0.003 3.997 16 N -0.372 5.372 17 C -0.427 4.427 18 H 0.067 0.933 19 C -0.268 4.268 20 N -0.600 5.600 21 Si 0.924 3.076 22 H -0.208 1.208 23 H -0.228 1.228 24 H -0.174 1.174 25 C -0.042 4.042 26 C -0.158 4.158 27 N -0.196 5.196 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.195 0.805 32 H 0.195 0.805 33 H 0.166 0.834 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.756 28.626 4.582 30.010 hybrid contribution -1.813 0.739 0.288 1.979 sum 5.944 29.365 4.870 30.353 Atomic orbital electron populations 1.20840 0.86621 1.04571 1.04116 1.21902 0.98479 0.88050 0.94576 1.22649 0.95158 1.00157 0.97812 1.22052 0.94826 0.98539 0.94480 1.22275 1.02444 0.92264 0.97807 1.20950 0.90293 0.93689 1.03204 1.18230 0.86271 0.84032 0.75728 1.90751 1.13946 1.87581 1.51918 1.45789 1.11352 1.04378 1.72562 1.22569 0.97264 0.82007 0.97121 0.86479 1.24154 0.86536 0.98089 0.95276 1.88772 1.35744 1.70406 1.33298 1.23206 0.95775 0.91184 0.85794 1.22544 0.93633 0.86538 0.96946 1.45591 1.20140 1.20405 1.51037 1.19784 0.94353 1.05928 1.22589 0.93253 1.27008 1.10475 0.91273 0.98033 1.71038 1.08060 1.27231 1.53662 0.83415 0.71100 0.76677 0.76426 1.20764 1.22802 1.17367 1.23308 0.89428 0.95393 0.96037 1.22754 0.99728 0.96881 0.96480 1.67331 1.08426 1.31940 1.11864 0.89382 0.87855 0.91331 0.80507 0.80454 0.83426 0.74705 0.89320 0.88157 0.91985 0.93208 0.94142 0.93348 0.93057 0.88600 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.17 71.24 0.72 -0.34 16 2 C 0.11 1.70 6.78 42.70 0.29 1.99 16 3 C -0.14 -1.36 9.75 22.44 0.22 -1.14 16 4 C -0.07 -0.78 10.17 22.44 0.23 -0.55 16 5 C -0.13 -2.23 9.63 22.61 0.22 -2.01 16 6 C 0.06 1.27 6.75 41.89 0.28 1.55 16 7 C 0.57 15.17 7.81 86.88 0.68 15.85 16 8 O -0.56 -17.22 15.97 -3.77 -0.06 -17.28 16 9 N -0.69 -17.55 5.14 -438.50 -2.25 -19.80 16 10 C 0.12 2.99 3.51 46.39 0.16 3.15 16 11 H 0.12 2.92 7.54 -2.38 -0.02 2.90 16 12 C 0.04 0.95 7.42 72.69 0.54 1.49 16 13 O -0.36 -11.70 11.32 -148.98 -1.69 -13.38 16 14 C 0.08 2.85 1.66 -10.81 -0.02 2.83 16 15 C 0.13 5.13 8.20 83.40 0.68 5.81 16 16 N -0.64 -31.51 3.53 -739.07 -2.61 -34.12 16 17 C -0.30 -17.50 10.96 84.03 0.92 -16.58 16 18 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 19 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 20 N -0.96 -61.78 13.70 21.65 0.30 -61.48 16 21 Si 1.10 52.92 25.33 68.60 1.74 54.66 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 24 H -0.25 -10.38 5.50 99.48 0.55 -9.84 16 25 C 0.08 3.52 6.69 83.50 0.56 4.08 16 26 C -0.12 -3.63 6.11 31.40 0.19 -3.44 16 27 N -0.48 -10.43 9.45 -173.07 -1.64 -12.07 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.48 8.08 -2.39 -0.02 0.46 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 32 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 33 H 0.15 2.50 7.64 -2.91 -0.02 2.47 16 34 H 0.42 10.40 7.95 -92.71 -0.74 9.66 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.06 2.30 7.91 -2.39 -0.02 2.29 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.14 3.52 -2.39 -0.01 2.14 16 42 H 0.10 2.99 6.78 -2.39 -0.02 2.97 16 43 H 0.09 2.76 7.70 -2.39 -0.02 2.74 16 Total: -1.00 -75.76 354.14 0.04 -75.71 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.11 Total: 19.04 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 6.15 Total: 8.73 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -6.20 Total: -127.48 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.75 Total: -30.67 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 1.74 Total: 54.66 kcal Total: -75.76 0.04 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053741377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.879 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds