Wall clock time and date at job start Tue Mar 31 2020 11:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38624 * 120.46718 * 2 1 4 4 C 1.38584 * 118.48952 * 180.02562 * 3 2 1 5 5 C 1.38601 * 119.35002 * 359.97438 * 4 3 2 6 6 N 1.31495 * 120.90256 * 0.25864 * 5 4 3 7 7 C 1.32750 * 121.64080 * 359.48055 * 6 5 4 8 8 C 1.48163 * 119.72739 * 180.26856 * 7 6 5 9 9 O 1.21513 * 120.00386 * 186.03571 * 8 7 6 10 10 N 1.34786 * 119.99685 * 6.03011 * 8 7 6 11 11 C 1.46499 * 119.99807 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.97482 * 322.29908 * 11 10 8 13 13 C 1.55012 * 111.10561 * 86.45796 * 11 10 8 14 14 O 1.43869 * 105.17016 * 154.03042 * 13 11 10 15 15 C 1.42528 * 109.62655 * 335.69353 * 14 13 11 16 16 C 1.53265 * 115.54578 * 231.50881 * 15 14 13 17 17 N 1.47707 * 85.91939 * 219.84055 * 16 15 14 18 18 C 1.36936 * 134.43923 * 204.14034 * 17 16 15 19 19 H 1.07997 * 120.00056 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99899 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99883 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00020 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46872 * 90.00226 * 22 20 18 24 24 H 1.48490 * 109.47465 * 210.00018 * 22 20 18 25 25 H 1.48505 * 109.47074 * 330.00498 * 22 20 18 26 26 C 1.47706 * 91.12460 * 24.15690 * 17 16 15 27 27 C 1.53767 * 108.37996 * 1.86468 * 15 14 13 28 28 H 1.08993 * 109.47359 * 96.72301 * 1 2 3 29 29 H 1.09007 * 109.46883 * 216.71980 * 1 2 3 30 30 H 1.09002 * 109.47318 * 336.71751 * 1 2 3 31 31 H 1.07997 * 120.75910 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.32768 * 179.97438 * 4 3 2 33 33 H 1.08002 * 119.54956 * 179.97438 * 5 4 3 34 34 H 0.96999 * 119.99892 * 0.02562 * 10 8 7 35 35 H 1.09002 * 110.29961 * 272.94489 * 13 11 10 36 36 H 1.08998 * 110.30327 * 35.00818 * 13 11 10 37 37 H 1.08996 * 113.80287 * 334.09305 * 16 15 14 38 38 H 1.09004 * 113.79619 * 105.58526 * 16 15 14 39 39 H 0.96998 * 119.99589 * 179.97438 * 21 20 18 40 40 H 1.08997 * 113.80594 * 221.60333 * 26 17 16 41 41 H 1.09003 * 113.91404 * 90.10419 * 26 17 16 42 42 H 1.09003 * 110.91909 * 262.78107 * 27 15 14 43 43 H 1.08999 * 110.92108 * 139.14178 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5949 1.1470 -0.0005 5 6 4.2321 -0.0838 -0.0005 6 7 3.5407 -1.2023 -0.0051 7 6 2.2132 -1.2004 0.0004 8 6 1.4766 -2.4860 0.0009 9 8 0.2661 -2.4928 -0.1048 10 7 2.1494 -3.6480 0.1185 11 6 1.4212 -4.9192 0.1185 12 1 0.4777 -4.8283 0.6565 13 6 1.1928 -5.4316 -1.3265 14 8 1.0704 -6.8599 -1.2046 15 6 1.7341 -7.2980 -0.0218 16 6 2.7379 -8.4404 -0.2118 17 7 2.2118 -8.9735 1.0613 18 6 2.7089 -9.8006 2.0328 19 1 2.1053 -10.0459 2.8940 20 6 3.9888 -10.3238 1.9106 21 7 4.7247 -10.0245 0.8612 22 14 4.6673 -11.4516 3.2362 23 1 4.3288 -12.8599 2.9088 24 1 6.1429 -11.3008 3.3068 25 1 4.0695 -11.0906 4.5468 26 6 0.9345 -8.2576 0.8668 27 6 2.2936 -6.0641 0.7055 28 1 -0.3634 -0.1203 -1.0205 29 1 -0.3633 -0.8238 0.6145 30 1 -0.3634 0.9440 0.4062 31 1 1.6900 2.1415 0.0004 32 1 4.1721 2.0599 -0.0010 33 1 5.3114 -0.1249 -0.0014 34 1 3.1157 -3.6425 0.2032 35 1 0.2769 -5.0073 -1.7379 36 1 2.0441 -5.1760 -1.9574 37 1 2.5268 -9.0727 -1.0742 38 1 3.7797 -8.1239 -0.1592 39 1 5.6193 -10.3898 0.7760 40 1 0.5463 -7.7959 1.7747 41 1 0.1828 -8.8336 0.3271 42 1 3.3461 -5.9143 0.4646 43 1 2.1506 -6.1492 1.7827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053764593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:33 Heat of formation + Delta-G solvation = 22.420613 kcal Electronic energy + Delta-G solvation = -26166.130490 eV Core-core repulsion = 22406.642657 eV Total energy + Delta-G solvation = -3759.487833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06028 -39.96074 -38.80958 -36.28329 -34.83006 -33.65014 -32.45301 -32.06747 -30.22995 -28.17116 -27.56168 -25.65736 -24.94214 -24.92010 -22.73034 -22.02076 -21.66600 -20.68630 -18.73717 -18.36358 -17.10903 -16.77754 -16.32111 -15.99377 -15.49093 -15.29109 -15.08672 -14.89617 -14.73801 -14.02065 -13.94615 -13.68661 -13.52021 -13.28521 -12.98471 -12.96824 -12.60758 -12.49311 -12.32308 -12.12460 -11.59644 -11.32145 -11.04945 -10.89134 -10.74081 -10.66539 -10.35394 -10.28355 -10.17877 -10.03788 -9.67463 -9.56023 -9.40497 -9.02658 -8.79499 -8.66855 -6.89651 -5.77402 -3.09915 0.33388 0.83717 2.53294 2.90551 3.39485 3.44145 3.46187 3.54011 3.86157 4.24022 4.39030 4.41701 4.51652 4.56216 4.57321 4.74440 5.00815 5.08112 5.15220 5.20539 5.30395 5.34284 5.37860 5.41022 5.51540 5.56229 5.64558 5.80241 5.91806 5.93382 6.01728 6.19351 6.28462 6.30886 6.39311 6.50726 6.61746 6.71389 7.05703 7.23660 7.25728 7.51918 7.54540 7.72596 7.96496 8.05155 9.03905 9.69705 10.58459 11.39970 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002786 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.049160 B =10049.553495 C =10821.594148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.072 4.072 3 C -0.088 4.088 4 C -0.146 4.146 5 C 0.090 3.910 6 N -0.453 5.453 7 C 0.072 3.928 8 C 0.571 3.429 9 O -0.527 6.527 10 N -0.695 5.695 11 C 0.107 3.893 12 H 0.105 0.895 13 C 0.045 3.955 14 O -0.365 6.365 15 C 0.055 3.945 16 C 0.165 3.835 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.118 3.882 27 C -0.117 4.117 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.413 0.587 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.254 0.746 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 24.749 -2.761 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.166 4.166 5 C -0.070 4.070 6 N -0.164 5.164 7 C -0.066 4.066 8 C 0.356 3.644 9 O -0.404 6.404 10 N -0.347 5.347 11 C 0.002 3.998 12 H 0.123 0.877 13 C -0.034 4.034 14 O -0.282 6.282 15 C 0.015 3.985 16 C 0.040 3.960 17 N -0.333 5.333 18 C -0.348 4.348 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.009 4.009 27 C -0.155 4.155 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.705 23.541 -2.833 23.999 hybrid contribution 0.754 0.310 0.729 1.093 sum -2.952 23.851 -2.104 24.125 Atomic orbital electron populations 1.21080 0.88881 1.03431 1.04123 1.20968 0.98511 0.92346 0.95699 1.21569 0.94188 0.98120 0.97534 1.22392 0.95293 0.99905 0.99013 1.22803 1.00581 0.87244 0.96327 1.67552 1.07046 1.32102 1.09708 1.21003 0.89897 0.93575 1.02080 1.17880 0.86605 0.83074 0.76829 1.90743 1.13058 1.86707 1.49895 1.45754 1.11671 1.04756 1.72498 1.22871 0.96962 0.82470 0.97473 0.87698 1.23654 1.01634 0.82374 0.95697 1.88398 1.76324 1.19627 1.43874 1.24208 0.95486 0.93949 0.84884 1.22511 0.96656 0.88445 0.88402 1.45679 1.11091 1.56012 1.20540 1.18975 0.97254 1.20593 0.97949 0.90086 1.24793 0.96849 1.00715 0.98062 1.69821 1.10225 1.47911 1.28750 0.86104 0.78128 0.80584 0.80848 1.21590 1.21632 1.20604 1.22827 0.90913 0.91603 0.95508 1.22855 0.99637 0.91344 1.01662 0.90234 0.88123 0.92190 0.84131 0.84196 0.81933 0.75005 0.89814 0.92258 0.94709 0.90521 0.93592 0.93487 0.93927 0.89680 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.74 36.01 0.31 -0.77 16 2 C -0.07 -0.71 5.93 -104.10 -0.62 -1.33 16 3 C -0.09 -0.63 9.83 -39.31 -0.39 -1.02 16 4 C -0.15 -0.92 10.11 -39.32 -0.40 -1.32 16 5 C 0.09 0.72 11.18 -17.56 -0.20 0.52 16 6 N -0.45 -4.96 9.56 -9.80 -0.09 -5.05 16 7 C 0.07 0.85 6.75 -83.01 -0.56 0.29 16 8 C 0.57 7.66 7.75 -12.18 -0.09 7.57 16 9 O -0.53 -7.92 13.06 5.35 0.07 -7.85 16 10 N -0.70 -9.09 5.23 -52.36 -0.27 -9.36 16 11 C 0.11 1.57 3.37 -65.56 -0.22 1.35 16 12 H 0.11 1.58 7.74 -51.93 -0.40 1.18 16 13 C 0.04 0.69 7.49 38.22 0.29 0.98 16 14 O -0.37 -6.94 11.14 -35.23 -0.39 -7.33 16 15 C 0.06 1.10 1.68 -90.05 -0.15 0.95 16 16 C 0.17 4.03 7.01 -3.25 -0.02 4.01 16 17 N -0.60 -15.71 3.67 -181.27 -0.67 -16.37 16 18 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -27.19 11.39 55.49 0.63 -26.56 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.12 2.54 8.37 -3.24 -0.03 2.51 16 27 C -0.12 -1.97 5.96 -25.03 -0.15 -2.12 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.13 5.85 -51.93 -0.30 0.83 16 30 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 31 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 33 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.41 5.03 7.85 -40.82 -0.32 4.71 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 2.00 7.05 -51.93 -0.37 1.63 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.05 0.94 7.98 -51.93 -0.41 0.52 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.41 7.85 -51.93 -0.41 1.01 16 43 H 0.09 1.58 7.83 -51.93 -0.41 1.17 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -32.76 356.52 -8.82 -41.59 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.97 Total: 3.52 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.48 Total: 4.97 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.40 Total: -57.34 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.32 Total: -15.18 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.76 -8.82 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053764593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.006 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds