Wall clock time and date at job start Tue Mar 31 2020 11:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38624 * 120.46718 * 2 1 4 4 C 1.38584 * 118.48952 * 180.02562 * 3 2 1 5 5 C 1.38601 * 119.35002 * 359.97438 * 4 3 2 6 6 N 1.31495 * 120.90256 * 0.25864 * 5 4 3 7 7 C 1.32750 * 121.64080 * 359.48055 * 6 5 4 8 8 C 1.48163 * 119.72739 * 180.26856 * 7 6 5 9 9 O 1.21513 * 120.00386 * 186.03571 * 8 7 6 10 10 N 1.34786 * 119.99685 * 6.03011 * 8 7 6 11 11 C 1.46499 * 119.99807 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.97482 * 322.29908 * 11 10 8 13 13 C 1.55012 * 111.10561 * 86.45796 * 11 10 8 14 14 O 1.43869 * 105.17016 * 154.03042 * 13 11 10 15 15 C 1.42528 * 109.62655 * 335.69353 * 14 13 11 16 16 C 1.53265 * 115.54578 * 231.50881 * 15 14 13 17 17 N 1.47707 * 85.91939 * 219.84055 * 16 15 14 18 18 C 1.36936 * 134.43923 * 204.14034 * 17 16 15 19 19 H 1.07997 * 120.00056 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99899 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99883 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00020 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46872 * 90.00226 * 22 20 18 24 24 H 1.48490 * 109.47465 * 210.00018 * 22 20 18 25 25 H 1.48505 * 109.47074 * 330.00498 * 22 20 18 26 26 C 1.47706 * 91.12460 * 24.15690 * 17 16 15 27 27 C 1.53767 * 108.37996 * 1.86468 * 15 14 13 28 28 H 1.08993 * 109.47359 * 96.72301 * 1 2 3 29 29 H 1.09007 * 109.46883 * 216.71980 * 1 2 3 30 30 H 1.09002 * 109.47318 * 336.71751 * 1 2 3 31 31 H 1.07997 * 120.75910 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.32768 * 179.97438 * 4 3 2 33 33 H 1.08002 * 119.54956 * 179.97438 * 5 4 3 34 34 H 0.96999 * 119.99892 * 0.02562 * 10 8 7 35 35 H 1.09002 * 110.29961 * 272.94489 * 13 11 10 36 36 H 1.08998 * 110.30327 * 35.00818 * 13 11 10 37 37 H 1.08996 * 113.80287 * 334.09305 * 16 15 14 38 38 H 1.09004 * 113.79619 * 105.58526 * 16 15 14 39 39 H 0.96998 * 119.99589 * 179.97438 * 21 20 18 40 40 H 1.08997 * 113.80594 * 221.60333 * 26 17 16 41 41 H 1.09003 * 113.91404 * 90.10419 * 26 17 16 42 42 H 1.09003 * 110.91909 * 262.78107 * 27 15 14 43 43 H 1.08999 * 110.92108 * 139.14178 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5949 1.1470 -0.0005 5 6 4.2321 -0.0838 -0.0005 6 7 3.5407 -1.2023 -0.0051 7 6 2.2132 -1.2004 0.0004 8 6 1.4766 -2.4860 0.0009 9 8 0.2661 -2.4928 -0.1048 10 7 2.1494 -3.6480 0.1185 11 6 1.4212 -4.9192 0.1185 12 1 0.4777 -4.8283 0.6565 13 6 1.1928 -5.4316 -1.3265 14 8 1.0704 -6.8599 -1.2046 15 6 1.7341 -7.2980 -0.0218 16 6 2.7379 -8.4404 -0.2118 17 7 2.2118 -8.9735 1.0613 18 6 2.7089 -9.8006 2.0328 19 1 2.1053 -10.0459 2.8940 20 6 3.9888 -10.3238 1.9106 21 7 4.7247 -10.0245 0.8612 22 14 4.6673 -11.4516 3.2362 23 1 4.3288 -12.8599 2.9088 24 1 6.1429 -11.3008 3.3068 25 1 4.0695 -11.0906 4.5468 26 6 0.9345 -8.2576 0.8668 27 6 2.2936 -6.0641 0.7055 28 1 -0.3634 -0.1203 -1.0205 29 1 -0.3633 -0.8238 0.6145 30 1 -0.3634 0.9440 0.4062 31 1 1.6900 2.1415 0.0004 32 1 4.1721 2.0599 -0.0010 33 1 5.3114 -0.1249 -0.0014 34 1 3.1157 -3.6425 0.2032 35 1 0.2769 -5.0073 -1.7379 36 1 2.0441 -5.1760 -1.9574 37 1 2.5268 -9.0727 -1.0742 38 1 3.7797 -8.1239 -0.1592 39 1 5.6193 -10.3898 0.7760 40 1 0.5463 -7.7959 1.7747 41 1 0.1828 -8.8336 0.3271 42 1 3.3461 -5.9143 0.4646 43 1 2.1506 -6.1492 1.7827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053764593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:32 Heat of formation + Delta-G solvation = -0.417833 kcal Electronic energy + Delta-G solvation = -26167.120840 eV Core-core repulsion = 22406.642657 eV Total energy + Delta-G solvation = -3760.478182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94001 -41.31027 -39.86889 -37.93084 -35.97400 -34.40887 -34.14197 -33.14913 -31.48321 -29.90935 -28.33761 -27.34951 -26.78273 -25.70256 -23.88489 -23.48343 -22.64788 -21.79790 -20.39998 -19.26755 -18.77531 -17.98653 -17.39173 -17.13278 -16.70337 -16.42026 -16.39162 -16.31027 -15.93000 -15.58936 -15.05842 -14.89620 -14.58355 -14.43534 -14.15822 -14.00251 -13.89796 -13.66598 -13.40328 -13.24929 -12.93293 -12.87558 -12.84310 -12.59181 -12.54073 -12.34227 -11.94461 -11.82329 -11.58182 -11.13744 -10.88627 -10.76813 -10.47682 -10.39518 -10.23299 -9.89058 -8.98213 -7.91956 -5.26949 -0.35461 0.25010 1.46584 1.48879 1.57536 1.65745 1.88369 2.43765 2.81425 2.86986 3.10424 3.23544 3.37534 3.45748 3.65212 3.69544 3.77089 3.86360 3.95410 3.99360 4.05399 4.07291 4.50394 4.57374 4.62838 4.64983 4.72624 4.79344 4.79961 4.80902 4.86793 4.89272 4.98593 5.09441 5.11638 5.18651 5.20988 5.30769 5.44065 5.46980 5.69722 5.86628 6.14306 6.32333 6.78819 6.88794 7.06394 7.57218 8.51632 9.25315 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002786 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.049160 B =10049.553495 C =10821.594148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.129 4.129 5 C 0.080 3.920 6 N -0.478 5.478 7 C 0.041 3.959 8 C 0.568 3.432 9 O -0.549 6.549 10 N -0.692 5.692 11 C 0.126 3.874 12 H 0.105 0.895 13 C 0.043 3.957 14 O -0.378 6.378 15 C 0.078 3.922 16 C 0.161 3.839 17 N -0.628 5.628 18 C -0.235 4.235 19 H 0.088 0.912 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.982 3.018 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.266 1.266 26 C 0.117 3.883 27 C -0.109 4.109 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.173 0.827 32 H 0.180 0.820 33 H 0.188 0.812 34 H 0.417 0.583 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.011 0.989 38 H 0.054 0.946 39 H 0.250 0.750 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 27.607 -1.948 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.081 4.081 6 N -0.189 5.189 7 C -0.095 4.095 8 C 0.355 3.645 9 O -0.428 6.428 10 N -0.344 5.344 11 C 0.020 3.980 12 H 0.122 0.878 13 C -0.034 4.034 14 O -0.295 6.295 15 C 0.037 3.963 16 C 0.035 3.965 17 N -0.357 5.357 18 C -0.363 4.363 19 H 0.106 0.894 20 C -0.258 4.258 21 N -0.601 5.601 22 Si 0.810 3.190 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.190 1.190 26 C -0.008 4.008 27 C -0.147 4.147 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.191 0.809 32 H 0.197 0.803 33 H 0.205 0.795 34 H 0.255 0.745 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.553 26.419 -2.018 26.733 hybrid contribution 0.700 -0.460 0.410 0.933 sum -2.853 25.959 -1.608 26.165 Atomic orbital electron populations 1.20997 0.88902 1.03787 1.03389 1.21156 0.98755 0.92831 0.95953 1.21977 0.94746 0.98257 0.96228 1.22839 0.95221 1.00689 0.96102 1.23385 1.01804 0.87273 0.95613 1.67484 1.06821 1.33918 1.10707 1.20794 0.90526 0.93086 1.05123 1.18266 0.86517 0.83701 0.75983 1.90729 1.14004 1.87159 1.50884 1.45662 1.11779 1.04207 1.72773 1.22558 0.96446 0.82572 0.96435 0.87755 1.23826 1.02649 0.80455 0.96516 1.88372 1.75899 1.21906 1.43357 1.23729 0.93484 0.93916 0.85167 1.22396 0.96593 0.90159 0.87325 1.45970 1.13068 1.56086 1.20536 1.19393 0.97612 1.20611 0.98645 0.89435 1.25667 0.97249 1.02498 1.00374 1.70014 1.10259 1.49122 1.30665 0.85026 0.77007 0.78224 0.78732 1.21548 1.21863 1.19018 1.22952 0.89685 0.91469 0.96738 1.22729 0.99930 0.90796 1.01224 0.90834 0.90627 0.89571 0.80944 0.80292 0.79489 0.74489 0.88582 0.91490 0.97111 0.92799 0.94116 0.91357 0.93876 0.89620 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 8.74 71.24 0.62 -1.36 16 2 C -0.08 -1.52 5.93 -19.52 -0.12 -1.63 16 3 C -0.09 -0.94 9.83 22.44 0.22 -0.72 16 4 C -0.13 -1.12 10.11 22.44 0.23 -0.89 16 5 C 0.08 1.06 11.18 84.83 0.95 2.01 16 6 N -0.48 -9.92 9.56 -184.91 -1.77 -11.69 16 7 C 0.04 0.94 6.75 41.89 0.28 1.22 16 8 C 0.57 15.26 7.75 86.88 0.67 15.93 16 9 O -0.55 -16.65 13.06 -3.76 -0.05 -16.70 16 10 N -0.69 -17.97 5.23 -437.86 -2.29 -20.26 16 11 C 0.13 3.62 3.37 46.53 0.16 3.77 16 12 H 0.10 3.08 7.74 -2.39 -0.02 3.06 16 13 C 0.04 1.32 7.49 72.67 0.54 1.86 16 14 O -0.38 -14.35 11.14 -148.98 -1.66 -16.01 16 15 C 0.08 3.14 1.68 -10.31 -0.02 3.12 16 16 C 0.16 8.15 7.01 86.23 0.60 8.76 16 17 N -0.63 -33.24 3.67 -732.73 -2.69 -35.93 16 18 C -0.23 -13.31 10.70 84.03 0.90 -12.41 16 19 H 0.09 4.71 7.83 -2.91 -0.02 4.68 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.95 -57.79 11.39 21.65 0.25 -57.54 16 22 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.12 5.03 8.37 86.24 0.72 5.76 16 27 C -0.11 -3.65 5.96 31.70 0.19 -3.46 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.71 5.85 -2.38 -0.01 1.70 16 30 H 0.09 0.97 8.05 -2.39 -0.02 0.95 16 31 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 32 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 33 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.42 10.13 7.85 -92.71 -0.73 9.40 16 35 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.05 2.94 7.05 -2.39 -0.02 2.93 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.07 2.65 7.98 -2.39 -0.02 2.63 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 2.88 7.85 -2.39 -0.02 2.86 16 43 H 0.09 3.09 7.83 -2.39 -0.02 3.07 16 Total: -1.00 -72.82 356.52 0.55 -72.27 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.31 Total: 19.31 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.42 Total: 18.72 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.50 Total: -125.42 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.71 Total: -32.71 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.82 0.55 -72.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053764593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.856 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds