Wall clock time and date at job start Tue Mar 31 2020 11:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38631 * 120.47179 * 2 1 4 4 C 1.38587 * 118.48986 * 180.28195 * 3 2 1 5 5 C 1.38604 * 119.35129 * 359.72901 * 4 3 2 6 6 N 1.31503 * 120.90097 * 359.97438 * 5 4 3 7 7 C 1.32750 * 121.63949 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72095 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00384 * 174.30627 * 8 7 6 10 10 N 1.34777 * 119.99847 * 354.30758 * 8 7 6 11 11 C 1.46500 * 120.00219 * 179.97438 * 10 8 7 12 12 H 1.09008 * 110.77012 * 31.47057 * 11 10 8 13 13 C 1.55057 * 110.87158 * 267.71326 * 11 10 8 14 14 O 1.44603 * 103.66826 * 205.31807 * 13 11 10 15 15 C 1.42838 * 106.73839 * 39.08167 * 14 13 11 16 16 C 1.52649 * 115.96343 * 202.49085 * 15 14 13 17 17 N 1.47220 * 87.78126 * 218.40742 * 16 15 14 18 18 C 1.36936 * 135.96575 * 206.41541 * 17 16 15 19 19 H 1.08004 * 119.99901 * 350.23682 * 18 17 16 20 20 C 1.38813 * 120.00016 * 170.22804 * 18 17 16 21 21 N 1.31621 * 119.99813 * 157.34359 * 20 18 17 22 22 Si 1.86796 * 120.00174 * 337.34689 * 20 18 17 23 23 H 1.48496 * 109.47180 * 89.99791 * 22 20 18 24 24 H 1.48505 * 109.47177 * 209.99950 * 22 20 18 25 25 H 1.48503 * 109.47235 * 329.99830 * 22 20 18 26 26 C 1.47214 * 88.06731 * 26.66950 * 17 16 15 27 27 C 1.53320 * 108.32899 * 334.31533 * 15 14 13 28 28 H 1.08996 * 109.47213 * 263.39187 * 1 2 3 29 29 H 1.08994 * 109.46920 * 23.39939 * 1 2 3 30 30 H 1.09002 * 109.46716 * 143.39137 * 1 2 3 31 31 H 1.07997 * 120.75228 * 0.03861 * 3 2 1 32 32 H 1.07994 * 120.32471 * 179.71241 * 4 3 2 33 33 H 1.07995 * 119.55335 * 180.02562 * 5 4 3 34 34 H 0.96998 * 120.00298 * 0.02562 * 10 8 7 35 35 H 1.09002 * 110.58722 * 323.86494 * 13 11 10 36 36 H 1.08999 * 110.58682 * 86.61913 * 13 11 10 37 37 H 1.08996 * 113.49931 * 103.67684 * 16 15 14 38 38 H 1.09003 * 113.55700 * 333.14249 * 16 15 14 39 39 H 0.97003 * 119.99972 * 4.46276 * 21 20 18 40 40 H 1.09000 * 113.50128 * 88.06105 * 26 17 16 41 41 H 1.09002 * 113.50081 * 218.61147 * 26 17 16 42 42 H 1.09006 * 110.56019 * 120.17683 * 27 15 14 43 43 H 1.08997 * 110.56290 * 243.03192 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5951 1.1469 -0.0060 5 6 4.2323 -0.0840 -0.0061 6 7 3.5407 -1.2025 0.0000 7 6 2.2132 -1.2004 0.0069 8 6 1.4767 -2.4860 0.0129 9 8 0.2666 -2.4925 0.1236 10 7 2.1488 -3.6483 -0.1043 11 6 1.4207 -4.9195 -0.0977 12 1 0.4297 -4.7996 -0.5357 13 6 1.3286 -5.4960 1.3388 14 8 1.1773 -6.9184 1.1270 15 6 2.0292 -7.2645 0.0340 16 6 1.6686 -8.5448 -0.7150 17 7 3.1109 -8.8181 -0.8261 18 6 3.9180 -9.5113 -1.6882 19 1 3.4810 -10.1516 -2.4402 20 6 5.2978 -9.3908 -1.5958 21 7 6.0748 -10.3384 -2.0762 22 14 6.0519 -7.8838 -0.7898 23 1 6.2254 -8.1345 0.6636 24 1 7.3740 -7.6027 -1.4050 25 1 5.1558 -6.7162 -0.9871 26 6 3.3048 -8.0254 0.3991 27 6 2.2228 -6.0194 -0.8394 28 1 -0.3633 -0.1183 1.0208 29 1 -0.3633 0.9431 -0.4081 30 1 -0.3633 -0.8250 -0.6129 31 1 1.6902 2.1414 0.0006 32 1 4.1722 2.0597 -0.0108 33 1 5.3114 -0.1251 -0.0103 34 1 3.1148 -3.6432 -0.1922 35 1 2.2422 -5.2863 1.8952 36 1 0.4620 -5.0894 1.8601 37 1 1.1850 -8.3651 -1.6751 38 1 1.1343 -9.2717 -0.1031 39 1 5.6864 -11.0893 -2.5519 40 1 3.2150 -8.6106 1.3143 41 1 4.2023 -7.4071 0.3793 42 1 3.2780 -5.7515 -0.8956 43 1 1.8149 -6.1841 -1.8367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053764594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:35 Heat of formation + Delta-G solvation = 32.317601 kcal Electronic energy + Delta-G solvation = -26479.405858 eV Core-core repulsion = 22720.347191 eV Total energy + Delta-G solvation = -3759.058667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11774 -40.26326 -38.96649 -36.67579 -34.93976 -33.70136 -32.49391 -32.35567 -30.38803 -28.45407 -27.62087 -25.76217 -25.43711 -24.97784 -22.77097 -21.87461 -21.44974 -20.79816 -19.10560 -18.44770 -17.45759 -17.15780 -16.34544 -16.10849 -15.72075 -15.53426 -15.26919 -15.13837 -14.98607 -14.12578 -14.06942 -13.67581 -13.55801 -13.41637 -13.31521 -13.01099 -12.91002 -12.62606 -12.53540 -12.32434 -11.75827 -11.61461 -11.39921 -11.05227 -10.79950 -10.70417 -10.52315 -10.32218 -10.21116 -9.80166 -9.72024 -9.44166 -9.31800 -9.06652 -8.83624 -8.62062 -7.21074 -6.38254 -3.23904 0.30141 0.81120 2.48105 2.84146 3.38045 3.42977 3.50418 3.61039 3.82073 4.10604 4.36362 4.38464 4.52471 4.54300 4.56200 4.62871 4.81549 4.84569 4.93345 4.97881 5.15685 5.19750 5.22170 5.32781 5.45939 5.47963 5.61969 5.74521 5.77959 5.79013 5.91518 6.03049 6.14345 6.15710 6.25693 6.31344 6.33568 6.34480 6.37346 6.58297 7.09830 7.20024 7.31652 7.49590 7.98339 8.22819 8.93741 9.48759 10.36230 11.12761 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.003468 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.253648 B = 8071.141068 C = 9262.459073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.072 4.072 3 C -0.088 4.088 4 C -0.145 4.145 5 C 0.091 3.909 6 N -0.454 5.454 7 C 0.071 3.929 8 C 0.572 3.428 9 O -0.528 6.528 10 N -0.698 5.698 11 C 0.109 3.891 12 H 0.110 0.890 13 C 0.039 3.961 14 O -0.355 6.355 15 C 0.059 3.941 16 C 0.132 3.868 17 N -0.616 5.616 18 C -0.310 4.310 19 H 0.080 0.920 20 C -0.018 4.018 21 N -0.921 5.921 22 Si 1.064 2.936 23 H -0.293 1.293 24 H -0.295 1.295 25 H -0.285 1.285 26 C 0.094 3.906 27 C -0.123 4.123 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.413 0.587 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 25.598 5.233 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.165 4.165 5 C -0.069 4.069 6 N -0.164 5.164 7 C -0.067 4.067 8 C 0.358 3.642 9 O -0.404 6.404 10 N -0.350 5.350 11 C 0.004 3.996 12 H 0.127 0.873 13 C -0.039 4.039 14 O -0.272 6.272 15 C 0.018 3.982 16 C 0.006 3.994 17 N -0.346 5.346 18 C -0.436 4.436 19 H 0.098 0.902 20 C -0.219 4.219 21 N -0.562 5.562 22 Si 0.897 3.103 23 H -0.220 1.220 24 H -0.223 1.223 25 H -0.213 1.213 26 C -0.032 4.032 27 C -0.161 4.161 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.139 25.108 5.686 26.715 hybrid contribution -1.033 0.267 -0.500 1.178 sum -8.172 25.374 5.187 27.157 Atomic orbital electron populations 1.21067 0.88877 1.03412 1.04078 1.20966 0.98494 0.92340 0.95723 1.21574 0.94187 0.98118 0.97515 1.22401 0.95294 0.99920 0.98895 1.22816 1.00617 0.87216 0.96231 1.67556 1.07034 1.32158 1.09697 1.20982 0.89918 0.93522 1.02238 1.17881 0.86581 0.83076 0.76690 1.90742 1.13064 1.86747 1.49896 1.45836 1.11753 1.04795 1.72568 1.22760 0.97428 0.82476 0.96982 0.87252 1.23880 1.02172 0.81992 0.95847 1.88800 1.64771 1.21943 1.51668 1.23608 0.92670 0.94725 0.87191 1.22434 0.88565 0.91529 0.96918 1.45576 1.02107 1.62521 1.24380 1.19934 0.88630 1.22078 1.12983 0.90202 1.25739 0.91820 1.02697 1.01623 1.70924 1.37253 1.09598 1.38395 0.83774 0.74847 0.76134 0.75567 1.22033 1.22265 1.21288 1.23092 0.95224 0.93003 0.91852 1.22714 1.01764 0.92065 0.99601 0.90236 0.92161 0.88214 0.84102 0.84147 0.81879 0.74970 0.91939 0.88739 0.93054 0.93269 0.92632 0.93172 0.93444 0.89192 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.73 36.01 0.31 -0.73 16 2 C -0.07 -0.70 5.93 -104.09 -0.62 -1.31 16 3 C -0.09 -0.62 9.83 -39.31 -0.39 -1.01 16 4 C -0.15 -0.91 10.11 -39.32 -0.40 -1.31 16 5 C 0.09 0.73 11.18 -17.56 -0.20 0.54 16 6 N -0.45 -4.99 9.56 -9.79 -0.09 -5.08 16 7 C 0.07 0.83 6.75 -83.01 -0.56 0.27 16 8 C 0.57 7.48 7.75 -12.18 -0.09 7.39 16 9 O -0.53 -7.64 12.96 5.35 0.07 -7.57 16 10 N -0.70 -8.97 5.18 -52.55 -0.27 -9.25 16 11 C 0.11 1.51 3.51 -65.77 -0.23 1.28 16 12 H 0.11 1.54 7.54 -51.92 -0.39 1.14 16 13 C 0.04 0.56 7.42 38.24 0.28 0.85 16 14 O -0.36 -6.17 11.32 -35.23 -0.40 -6.57 16 15 C 0.06 1.10 1.66 -90.66 -0.15 0.95 16 16 C 0.13 2.72 8.20 -8.04 -0.07 2.66 16 17 N -0.62 -15.34 3.52 -184.63 -0.65 -15.99 16 18 C -0.31 -8.93 10.96 -15.06 -0.17 -9.10 16 19 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 20 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 21 N -0.92 -28.86 13.70 55.49 0.76 -28.09 16 22 Si 1.06 26.40 25.32 -169.99 -4.30 22.10 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 25 H -0.29 -6.39 5.47 56.52 0.31 -6.08 16 26 C 0.09 2.07 6.70 -7.89 -0.05 2.01 16 27 C -0.12 -2.00 6.20 -25.49 -0.16 -2.16 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.39 8.05 -51.93 -0.42 -0.03 16 30 H 0.10 1.08 5.87 -51.93 -0.30 0.78 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.41 5.11 7.75 -40.82 -0.32 4.80 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.00 7.91 -51.93 -0.41 0.59 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 1.05 3.53 -51.93 -0.18 0.87 16 42 H 0.09 1.53 6.37 -51.93 -0.33 1.20 16 43 H 0.09 1.45 7.81 -51.93 -0.41 1.04 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -33.56 348.21 -8.03 -41.59 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.81 Total: 3.92 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.57 Total: -0.31 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.26 Total: -58.41 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.33 Total: -14.14 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.30 Total: 22.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.56 -8.03 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053764594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.906 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds