Wall clock time and date at job start Tue Mar 31 2020 11:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38631 * 120.47179 * 2 1 4 4 C 1.38587 * 118.48986 * 180.28195 * 3 2 1 5 5 C 1.38604 * 119.35129 * 359.72901 * 4 3 2 6 6 N 1.31503 * 120.90097 * 359.97438 * 5 4 3 7 7 C 1.32750 * 121.63949 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72095 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00384 * 174.30627 * 8 7 6 10 10 N 1.34777 * 119.99847 * 354.30758 * 8 7 6 11 11 C 1.46500 * 120.00219 * 179.97438 * 10 8 7 12 12 H 1.09008 * 110.77012 * 31.47057 * 11 10 8 13 13 C 1.55057 * 110.87158 * 267.71326 * 11 10 8 14 14 O 1.44603 * 103.66826 * 205.31807 * 13 11 10 15 15 C 1.42838 * 106.73839 * 39.08167 * 14 13 11 16 16 C 1.52649 * 115.96343 * 202.49085 * 15 14 13 17 17 N 1.47220 * 87.78126 * 218.40742 * 16 15 14 18 18 C 1.36936 * 135.96575 * 206.41541 * 17 16 15 19 19 H 1.08004 * 119.99901 * 350.23682 * 18 17 16 20 20 C 1.38813 * 120.00016 * 170.22804 * 18 17 16 21 21 N 1.31621 * 119.99813 * 157.34359 * 20 18 17 22 22 Si 1.86796 * 120.00174 * 337.34689 * 20 18 17 23 23 H 1.48496 * 109.47180 * 89.99791 * 22 20 18 24 24 H 1.48505 * 109.47177 * 209.99950 * 22 20 18 25 25 H 1.48503 * 109.47235 * 329.99830 * 22 20 18 26 26 C 1.47214 * 88.06731 * 26.66950 * 17 16 15 27 27 C 1.53320 * 108.32899 * 334.31533 * 15 14 13 28 28 H 1.08996 * 109.47213 * 263.39187 * 1 2 3 29 29 H 1.08994 * 109.46920 * 23.39939 * 1 2 3 30 30 H 1.09002 * 109.46716 * 143.39137 * 1 2 3 31 31 H 1.07997 * 120.75228 * 0.03861 * 3 2 1 32 32 H 1.07994 * 120.32471 * 179.71241 * 4 3 2 33 33 H 1.07995 * 119.55335 * 180.02562 * 5 4 3 34 34 H 0.96998 * 120.00298 * 0.02562 * 10 8 7 35 35 H 1.09002 * 110.58722 * 323.86494 * 13 11 10 36 36 H 1.08999 * 110.58682 * 86.61913 * 13 11 10 37 37 H 1.08996 * 113.49931 * 103.67684 * 16 15 14 38 38 H 1.09003 * 113.55700 * 333.14249 * 16 15 14 39 39 H 0.97003 * 119.99972 * 4.46276 * 21 20 18 40 40 H 1.09000 * 113.50128 * 88.06105 * 26 17 16 41 41 H 1.09002 * 113.50081 * 218.61147 * 26 17 16 42 42 H 1.09006 * 110.56019 * 120.17683 * 27 15 14 43 43 H 1.08997 * 110.56290 * 243.03192 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5951 1.1469 -0.0060 5 6 4.2323 -0.0840 -0.0061 6 7 3.5407 -1.2025 0.0000 7 6 2.2132 -1.2004 0.0069 8 6 1.4767 -2.4860 0.0129 9 8 0.2666 -2.4925 0.1236 10 7 2.1488 -3.6483 -0.1043 11 6 1.4207 -4.9195 -0.0977 12 1 0.4297 -4.7996 -0.5357 13 6 1.3286 -5.4960 1.3388 14 8 1.1773 -6.9184 1.1270 15 6 2.0292 -7.2645 0.0340 16 6 1.6686 -8.5448 -0.7150 17 7 3.1109 -8.8181 -0.8261 18 6 3.9180 -9.5113 -1.6882 19 1 3.4810 -10.1516 -2.4402 20 6 5.2978 -9.3908 -1.5958 21 7 6.0748 -10.3384 -2.0762 22 14 6.0519 -7.8838 -0.7898 23 1 6.2254 -8.1345 0.6636 24 1 7.3740 -7.6027 -1.4050 25 1 5.1558 -6.7162 -0.9871 26 6 3.3048 -8.0254 0.3991 27 6 2.2228 -6.0194 -0.8394 28 1 -0.3633 -0.1183 1.0208 29 1 -0.3633 0.9431 -0.4081 30 1 -0.3633 -0.8250 -0.6129 31 1 1.6902 2.1414 0.0006 32 1 4.1722 2.0597 -0.0108 33 1 5.3114 -0.1251 -0.0103 34 1 3.1148 -3.6432 -0.1922 35 1 2.2422 -5.2863 1.8952 36 1 0.4620 -5.0894 1.8601 37 1 1.1850 -8.3651 -1.6751 38 1 1.1343 -9.2717 -0.1031 39 1 5.6864 -11.0893 -2.5519 40 1 3.2150 -8.6106 1.3143 41 1 4.2023 -7.4071 0.3793 42 1 3.2780 -5.7515 -0.8956 43 1 1.8149 -6.1841 -1.8367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053764594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:34 Heat of formation + Delta-G solvation = 7.428369 kcal Electronic energy + Delta-G solvation = -26480.485136 eV Core-core repulsion = 22720.347191 eV Total energy + Delta-G solvation = -3760.137945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03173 -41.49738 -39.93763 -38.19919 -36.00254 -34.53646 -34.41547 -33.15980 -31.56517 -30.13668 -28.34604 -27.35508 -27.15069 -25.70287 -23.58483 -23.36539 -22.63632 -21.81625 -20.78893 -19.52125 -19.27282 -17.99627 -17.46036 -17.31239 -16.88812 -16.59137 -16.49750 -16.31216 -16.02571 -15.57001 -15.30771 -15.03215 -14.87150 -14.46233 -14.30629 -14.16245 -14.01816 -13.67336 -13.43889 -13.33399 -13.15548 -12.93548 -12.86063 -12.68152 -12.44067 -12.37957 -11.98038 -11.54583 -11.34707 -11.13689 -10.79808 -10.77544 -10.50779 -10.43700 -10.25019 -9.89449 -9.30003 -8.70210 -5.48822 -0.35942 0.24404 1.37545 1.48262 1.64812 1.66676 1.88278 2.51611 2.65800 2.82988 2.91083 3.11009 3.25518 3.36745 3.46594 3.53395 3.74701 3.85805 3.93795 3.99421 4.03634 4.05920 4.44083 4.49790 4.55703 4.57933 4.61416 4.63970 4.69525 4.74693 4.76500 4.79538 4.81645 4.84127 4.89804 5.10572 5.15277 5.17582 5.28174 5.42195 5.69104 5.89704 5.92760 6.30511 6.64943 6.77732 7.05255 7.29812 8.24426 8.82965 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.003468 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.253648 B = 8071.141068 C = 9262.459073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.129 4.129 5 C 0.080 3.920 6 N -0.479 5.479 7 C 0.041 3.959 8 C 0.570 3.430 9 O -0.548 6.548 10 N -0.696 5.696 11 C 0.123 3.877 12 H 0.110 0.890 13 C 0.038 3.962 14 O -0.362 6.362 15 C 0.082 3.918 16 C 0.127 3.873 17 N -0.642 5.642 18 C -0.301 4.301 19 H 0.049 0.951 20 C -0.074 4.074 21 N -0.956 5.956 22 Si 1.100 2.900 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.249 1.249 26 C 0.085 3.915 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.416 0.584 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.249 0.751 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 29.776 6.342 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.081 4.081 6 N -0.190 5.190 7 C -0.096 4.096 8 C 0.357 3.643 9 O -0.427 6.427 10 N -0.348 5.348 11 C 0.018 3.982 12 H 0.128 0.872 13 C -0.040 4.040 14 O -0.279 6.279 15 C 0.041 3.959 16 C 0.001 3.999 17 N -0.372 5.372 18 C -0.428 4.428 19 H 0.067 0.933 20 C -0.268 4.268 21 N -0.599 5.599 22 Si 0.926 3.074 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.175 1.175 26 C -0.040 4.040 27 C -0.159 4.159 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.196 0.804 33 H 0.204 0.796 34 H 0.254 0.746 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.380 29.302 6.810 30.975 hybrid contribution -1.050 -0.997 -0.827 1.668 sum -8.430 28.304 5.984 30.133 Atomic orbital electron populations 1.20987 0.88834 1.03746 1.03407 1.21161 0.98777 0.92812 0.95945 1.21978 0.94717 0.98301 0.96223 1.22833 0.95253 1.00666 0.96119 1.23376 1.01792 0.87289 0.95616 1.67490 1.06877 1.33898 1.10723 1.20819 0.90500 0.93175 1.05094 1.18226 0.86486 0.83664 0.75928 1.90729 1.13941 1.87165 1.50840 1.45767 1.11802 1.04411 1.72806 1.22520 0.97074 0.82426 0.96225 0.87244 1.24069 1.03370 0.80212 0.96312 1.88786 1.64092 1.23974 1.51044 1.23140 0.90685 0.94646 0.87418 1.22575 0.86425 0.92843 0.98009 1.45594 1.03929 1.62563 1.25104 1.19794 0.89321 1.21096 1.12559 0.93294 1.27040 0.92762 1.04456 1.02540 1.71041 1.37778 1.10431 1.40686 0.83381 0.74624 0.74140 0.75267 1.20847 1.22615 1.17456 1.23291 0.97156 0.93058 0.90518 1.22670 1.01947 0.91704 0.99571 0.90752 0.89646 0.90634 0.80978 0.80370 0.79566 0.74623 0.91092 0.87212 0.91888 0.92917 0.94149 0.93270 0.93111 0.89553 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 8.73 71.24 0.62 -1.23 16 2 C -0.08 -1.45 5.93 -19.52 -0.12 -1.57 16 3 C -0.09 -0.90 9.83 22.45 0.22 -0.68 16 4 C -0.13 -1.08 10.11 22.44 0.23 -0.86 16 5 C 0.08 1.04 11.18 84.83 0.95 1.99 16 6 N -0.48 -9.67 9.56 -184.90 -1.77 -11.43 16 7 C 0.04 0.89 6.75 41.89 0.28 1.17 16 8 C 0.57 14.44 7.75 86.88 0.67 15.11 16 9 O -0.55 -15.63 12.96 -3.77 -0.05 -15.68 16 10 N -0.70 -16.93 5.18 -438.47 -2.27 -19.20 16 11 C 0.12 3.20 3.51 46.39 0.16 3.37 16 12 H 0.11 2.90 7.54 -2.38 -0.02 2.88 16 13 C 0.04 1.00 7.42 72.69 0.54 1.54 16 14 O -0.36 -11.83 11.32 -148.98 -1.69 -13.52 16 15 C 0.08 2.93 1.66 -10.82 -0.02 2.91 16 16 C 0.13 5.13 8.20 83.40 0.68 5.82 16 17 N -0.64 -31.79 3.52 -739.16 -2.60 -34.40 16 18 C -0.30 -17.66 10.96 84.03 0.92 -16.74 16 19 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 20 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 21 N -0.96 -61.71 13.70 21.65 0.30 -61.41 16 22 Si 1.10 52.76 25.32 68.60 1.74 54.50 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 25 H -0.25 -10.36 5.47 99.48 0.54 -9.82 16 26 C 0.08 3.61 6.70 83.50 0.56 4.17 16 27 C -0.12 -3.70 6.20 31.40 0.19 -3.50 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 0.90 8.05 -2.39 -0.02 0.88 16 30 H 0.08 1.62 5.87 -2.39 -0.01 1.61 16 31 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 32 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 33 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.42 9.67 7.75 -92.71 -0.72 8.95 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.06 2.39 7.91 -2.39 -0.02 2.37 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 2.13 3.53 -2.39 -0.01 2.13 16 42 H 0.09 2.73 6.37 -2.38 -0.02 2.71 16 43 H 0.09 2.84 7.81 -2.39 -0.02 2.82 16 Total: -1.00 -74.89 348.21 0.15 -74.74 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.13 Total: 18.87 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.37 Total: 7.54 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.34 Total: -126.45 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.73 Total: -29.20 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 1.74 Total: 54.50 kcal Total: -74.89 0.15 -74.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053764594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.164 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds