Wall clock time and date at job start Tue Mar 31 2020 11:03:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86804 * 119.99954 * 2 1
4 4 H 1.48503 * 109.46953 * 240.00225 * 3 2 1
5 5 H 1.48494 * 109.47134 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.46989 * 120.00008 * 3 2 1
7 7 C 1.38813 * 120.00235 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00578 * 179.97438 * 7 2 1
9 9 N 1.36942 * 119.99798 * 359.97438 * 7 2 1
10 10 C 1.46644 * 125.28755 * 180.02562 * 9 7 2
11 11 C 1.53525 * 107.05037 * 197.40475 * 10 9 7
12 12 H 1.08993 * 112.80576 * 211.54093 * 11 10 9
13 13 C 1.54784 * 109.68540 * 84.08679 * 11 10 9
14 14 C 1.55167 * 101.35695 * 212.75705 * 13 11 10
15 15 N 1.47353 * 104.79156 * 37.54259 * 14 13 11
16 16 C 1.34775 * 125.51734 * 156.69011 * 15 14 13
17 17 O 1.21500 * 119.99659 * 179.69760 * 16 15 14
18 18 C 1.48329 * 120.00401 * 359.68861 * 16 15 14
19 19 C 1.42270 * 126.93859 * 180.32610 * 18 16 15
20 20 C 1.35313 * 103.92400 * 180.14095 * 19 18 16
21 21 C 1.50701 * 126.66960 * 179.88251 * 20 19 18
22 22 C 1.53001 * 117.51956 * 170.99422 * 21 20 19
23 23 C 1.52999 * 60.00190 * 107.47765 * 22 21 20
24 24 O 1.34020 * 106.66815 * 359.61421 * 20 19 18
25 25 N 1.20910 * 111.84368 * 0.26779 * 24 20 19
26 26 C 1.47252 * 108.95259 * 336.42231 * 15 14 13
27 27 H 1.09001 * 111.94241 * 235.83003 * 26 15 14
28 28 C 1.46496 * 125.28696 * 0.03387 * 9 7 2
29 29 H 0.96994 * 119.99541 * 0.02562 * 1 2 3
30 30 H 1.09004 * 109.92129 * 316.75378 * 10 9 7
31 31 H 1.08994 * 109.92053 * 78.05246 * 10 9 7
32 32 H 1.08998 * 111.03417 * 330.96415 * 13 11 10
33 33 H 1.09003 * 111.02939 * 94.84150 * 13 11 10
34 34 H 1.08999 * 110.48223 * 278.68512 * 14 13 11
35 35 H 1.08993 * 110.32810 * 156.32660 * 14 13 11
36 36 H 1.08006 * 128.04093 * 0.02562 * 19 18 16
37 37 H 1.09002 * 115.55088 * 25.29031 * 21 20 19
38 38 H 1.09001 * 117.49733 * 214.97195 * 22 21 20
39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 20
40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21
41 41 H 1.09004 * 117.51638 * 107.47550 * 23 22 21
42 42 H 1.08995 * 109.71849 * 58.29144 * 28 9 7
43 43 H 1.09006 * 109.67035 * 297.71879 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2126
5 1 1.2853 2.7464 0.0006
6 1 3.1040 1.6964 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3256 -2.3881 -0.0005
10 6 1.9387 -3.7202 -0.0005
11 6 0.8546 -4.7147 -0.4396
12 1 0.9734 -5.6976 0.0162
13 6 0.7822 -4.7583 -1.9851
14 6 -0.7286 -5.0295 -2.2126
15 7 -1.4127 -4.2476 -1.1677
16 6 -2.6879 -3.8148 -1.2222
17 8 -3.1539 -3.1797 -0.2972
18 6 -3.5224 -4.1137 -2.4115
19 6 -4.8744 -3.7265 -2.6265
20 6 -5.1709 -4.2405 -3.8426
21 6 -6.4866 -4.1317 -4.5692
22 6 -6.5330 -4.6075 -6.0226
23 6 -7.2068 -5.4339 -4.9253
24 8 -4.0651 -4.8600 -4.2780
25 7 -3.1616 -4.7828 -3.4782
26 6 -0.4793 -4.0214 -0.0515
27 1 -0.8828 -4.3790 0.8958
28 6 -0.1331 -2.5231 -0.0007
29 1 -0.4849 0.8400 -0.0004
30 1 2.7721 -3.7455 -0.7027
31 1 2.2867 -3.9689 1.0020
32 1 1.0811 -3.8036 -2.4179
33 1 1.3886 -5.5723 -2.3823
34 1 -0.9474 -6.0909 -2.0963
35 1 -1.0302 -4.6856 -3.2020
36 1 -5.5159 -3.1566 -1.9705
37 1 -7.1024 -3.2732 -4.3008
38 1 -7.1792 -4.0620 -6.7104
39 1 -5.6116 -4.9989 -6.4536
40 1 -6.7286 -6.3692 -4.6343
41 1 -8.2962 -5.4321 -4.8907
42 1 -0.5489 -2.0200 -0.8737
43 1 -0.5426 -2.0814 0.9079
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001076099187.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:32
Heat of formation + Delta-G solvation = 101.573621 kcal
Electronic energy + Delta-G solvation = -26888.021128 eV
Core-core repulsion = 23131.965627 eV
Total energy + Delta-G solvation = -3756.055501 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-45.08999 -40.03876 -37.83878 -37.71084 -34.93561 -33.92109 -32.31007 -31.47384
-30.62203 -28.69004 -26.92428 -25.01220 -24.44564 -23.70145 -22.88381 -22.68973
-21.70098 -20.39594 -19.47146 -18.53502 -17.80266 -17.49737 -16.98832 -16.61103
-15.98652 -15.43902 -15.33806 -14.52487 -14.49600 -14.11369 -13.68809 -13.55819
-13.40052 -12.85040 -12.74830 -12.58832 -12.21531 -11.97960 -11.78038 -11.66911
-11.53732 -11.32894 -11.15977 -10.97091 -10.84881 -10.73979 -10.45445 -10.40091
-10.18293 -10.03996 -9.85671 -9.81210 -9.66936 -9.31744 -8.55330 -8.22753
-6.78104 -5.63885 -3.00715 1.12626 1.65583 2.75830 3.08363 3.43472
3.43710 3.47224 3.48526 3.49691 3.99957 4.08462 4.38272 4.52151
4.53469 4.70283 4.90793 4.96992 5.06466 5.16190 5.23438 5.27300
5.34156 5.46566 5.52887 5.59187 5.63173 5.67553 5.69612 5.80406
5.83987 5.93488 5.97612 6.10480 6.18631 6.41107 6.59944 6.62484
6.63865 6.87624 7.56578 7.64783 7.85943 7.92442 7.99448 8.32913
8.42681 9.26838 9.87876 10.50741 11.45544
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.017454 B = 0.003485 C = 0.003151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1603.815730 B = 8031.651226 C = 8884.879344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.006 4.006
3 Si 0.912 3.088
4 H -0.285 1.285
5 H -0.290 1.290
6 H -0.285 1.285
7 C -0.235 4.235
8 H 0.078 0.922
9 N -0.602 5.602
10 C 0.145 3.855
11 C -0.110 4.110
12 H 0.090 0.910
13 C -0.120 4.120
14 C 0.101 3.899
15 N -0.591 5.591
16 C 0.605 3.395
17 O -0.512 6.512
18 C -0.007 4.007
19 C -0.173 4.173
20 C -0.009 4.009
21 C -0.084 4.084
22 C -0.166 4.166
23 C -0.163 4.163
24 O 0.114 5.886
25 N -0.330 5.330
26 C 0.114 3.886
27 H 0.084 0.916
28 C 0.179 3.821
29 H 0.253 0.747
30 H 0.039 0.961
31 H 0.018 0.982
32 H 0.086 0.914
33 H 0.078 0.922
34 H 0.064 0.936
35 H 0.083 0.917
36 H 0.181 0.819
37 H 0.140 0.860
38 H 0.106 0.894
39 H 0.104 0.896
40 H 0.100 0.900
41 H 0.107 0.893
42 H 0.056 0.944
43 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.923 -13.869 -10.820 21.250
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.203 4.203
3 Si 0.742 3.258
4 H -0.212 1.212
5 H -0.216 1.216
6 H -0.211 1.211
7 C -0.363 4.363
8 H 0.096 0.904
9 N -0.329 5.329
10 C 0.019 3.981
11 C -0.130 4.130
12 H 0.108 0.892
13 C -0.158 4.158
14 C -0.021 4.021
15 N -0.325 5.325
16 C 0.390 3.610
17 O -0.385 6.385
18 C -0.167 4.167
19 C -0.195 4.195
20 C -0.072 4.072
21 C -0.103 4.103
22 C -0.203 4.203
23 C -0.200 4.200
24 O 0.040 5.960
25 N -0.033 5.033
26 C 0.011 3.989
27 H 0.102 0.898
28 C 0.053 3.947
29 H 0.064 0.936
30 H 0.058 0.942
31 H 0.035 0.965
32 H 0.105 0.895
33 H 0.096 0.904
34 H 0.082 0.918
35 H 0.101 0.899
36 H 0.198 0.802
37 H 0.158 0.842
38 H 0.124 0.876
39 H 0.123 0.877
40 H 0.119 0.881
41 H 0.125 0.875
42 H 0.074 0.926
43 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -11.140 -13.833 -10.623 20.695
hybrid contribution -0.144 1.369 0.426 1.441
sum -11.283 -12.464 -10.197 19.663
Atomic orbital electron populations
1.69994 1.04765 1.25184 1.56196 1.24857 0.95694 0.97737 1.02018
0.86208 0.78415 0.83318 0.77837 1.21206 1.21621 1.21136 1.18960
0.90337 0.82241 1.44735 0.90379 1.44122 1.01363 1.00012 1.87397
1.21075 0.93847 0.85666 0.97558 1.22969 0.95327 0.98879 0.95802
0.89226 1.22800 0.94222 1.03097 0.95689 1.22499 0.92657 0.94994
0.91994 1.48388 1.10369 1.53149 1.20560 1.16420 0.80240 0.79945
0.84420 1.90838 1.71727 1.39050 1.36934 1.23573 0.95389 1.01669
0.96036 1.22340 0.95088 1.04962 0.97157 1.23349 0.90261 0.98676
0.94915 1.20425 0.90750 1.00984 0.98146 1.23086 1.03678 1.03120
0.90445 1.23121 1.00168 0.94386 1.02304 1.84743 1.15875 1.56865
1.38470 1.74264 1.10193 1.17851 1.00943 1.22979 0.87286 1.00326
0.88290 0.89806 1.21280 0.84284 0.87030 1.02072 0.93625 0.94248
0.96453 0.89504 0.90390 0.91789 0.89865 0.80181 0.84213 0.87557
0.87712 0.88141 0.87491 0.92633 0.93540
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.28 10.23 55.49 0.57 -27.71 16
2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16
3 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16
4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16
7 C -0.23 -6.68 10.25 -15.06 -0.15 -6.83 16
8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16
9 N -0.60 -15.76 3.37 -172.27 -0.58 -16.34 16
10 C 0.15 2.99 6.50 -3.69 -0.02 2.96 16
11 C -0.11 -1.90 3.97 -88.21 -0.35 -2.25 16
12 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
13 C -0.12 -1.90 6.34 -24.64 -0.16 -2.05 16
14 C 0.10 1.61 6.15 -2.43 -0.01 1.60 16
15 N -0.59 -11.43 2.83 -162.59 -0.46 -11.89 16
16 C 0.60 12.31 7.59 -12.11 -0.09 12.22 16
17 O -0.51 -12.05 17.04 5.37 0.09 -11.95 16
18 C -0.01 -0.13 7.01 -82.53 -0.58 -0.70 16
19 C -0.17 -2.39 10.92 -39.08 -0.43 -2.82 16
20 C -0.01 -0.10 6.93 -35.35 -0.25 -0.35 16
21 C -0.08 -0.63 6.27 -91.77 -0.58 -1.20 16
22 C -0.17 -1.00 10.18 -26.73 -0.27 -1.27 16
23 C -0.16 -0.94 10.23 -26.73 -0.27 -1.22 16
24 O 0.11 1.47 10.96 17.23 0.19 1.66 16
25 N -0.33 -5.05 9.30 33.29 0.31 -4.74 16
26 C 0.11 2.35 3.81 -65.88 -0.25 2.10 16
27 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16
28 C 0.18 4.67 4.63 -3.60 -0.02 4.65 16
29 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16
30 H 0.04 0.78 7.95 -51.93 -0.41 0.37 16
31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.09 1.63 7.93 -51.93 -0.41 1.22 16
33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
35 H 0.08 1.34 6.26 -51.93 -0.33 1.02 16
36 H 0.18 2.23 8.06 -52.48 -0.42 1.80 16
37 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16
38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16
39 H 0.10 0.68 8.01 -51.93 -0.42 0.27 16
40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.06 1.65 6.88 -51.93 -0.36 1.29 16
43 H 0.05 1.39 7.51 -51.93 -0.39 1.00 16
LS Contribution 352.90 15.07 5.32 5.32
Total: -1.00 -34.50 352.90 -9.20 -43.70
By element:
Atomic # 1 Polarization: 5.78 SS G_CDS: -6.09 Total: -0.30 kcal
Atomic # 6 Polarization: 8.08 SS G_CDS: -3.53 Total: 4.55 kcal
Atomic # 7 Polarization: -60.51 SS G_CDS: -0.16 Total: -60.68 kcal
Atomic # 8 Polarization: -10.58 SS G_CDS: 0.28 Total: -10.29 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -34.50 -9.20 -43.70 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076099187.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.278 kcal
(2) G-P(sol) polarization free energy of solvation -34.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) 101.574 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds