Wall clock time and date at job start Tue Mar 31 2020 11:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99954 * 2 1 4 4 H 1.48503 * 109.46953 * 240.00225 * 3 2 1 5 5 H 1.48494 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46989 * 120.00008 * 3 2 1 7 7 C 1.38813 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00578 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46644 * 125.28755 * 180.02562 * 9 7 2 11 11 C 1.53525 * 107.05037 * 197.40475 * 10 9 7 12 12 H 1.08993 * 112.80576 * 211.54093 * 11 10 9 13 13 C 1.54784 * 109.68540 * 84.08679 * 11 10 9 14 14 C 1.55167 * 101.35695 * 212.75705 * 13 11 10 15 15 N 1.47353 * 104.79156 * 37.54259 * 14 13 11 16 16 C 1.34775 * 125.51734 * 156.69011 * 15 14 13 17 17 O 1.21500 * 119.99659 * 179.69760 * 16 15 14 18 18 C 1.48329 * 120.00401 * 359.68861 * 16 15 14 19 19 C 1.42270 * 126.93859 * 180.32610 * 18 16 15 20 20 C 1.35313 * 103.92400 * 180.14095 * 19 18 16 21 21 C 1.50701 * 126.66960 * 179.88251 * 20 19 18 22 22 C 1.53001 * 117.51956 * 170.99422 * 21 20 19 23 23 C 1.52999 * 60.00190 * 107.47765 * 22 21 20 24 24 O 1.34020 * 106.66815 * 359.61421 * 20 19 18 25 25 N 1.20910 * 111.84368 * 0.26779 * 24 20 19 26 26 C 1.47252 * 108.95259 * 336.42231 * 15 14 13 27 27 H 1.09001 * 111.94241 * 235.83003 * 26 15 14 28 28 C 1.46496 * 125.28696 * 0.03387 * 9 7 2 29 29 H 0.96994 * 119.99541 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.92129 * 316.75378 * 10 9 7 31 31 H 1.08994 * 109.92053 * 78.05246 * 10 9 7 32 32 H 1.08998 * 111.03417 * 330.96415 * 13 11 10 33 33 H 1.09003 * 111.02939 * 94.84150 * 13 11 10 34 34 H 1.08999 * 110.48223 * 278.68512 * 14 13 11 35 35 H 1.08993 * 110.32810 * 156.32660 * 14 13 11 36 36 H 1.08006 * 128.04093 * 0.02562 * 19 18 16 37 37 H 1.09002 * 115.55088 * 25.29031 * 21 20 19 38 38 H 1.09001 * 117.49733 * 214.97195 * 22 21 20 39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 41 41 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 42 42 H 1.08995 * 109.71849 * 58.29144 * 28 9 7 43 43 H 1.09006 * 109.67035 * 297.71879 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9387 -3.7202 -0.0005 11 6 0.8546 -4.7147 -0.4396 12 1 0.9734 -5.6976 0.0162 13 6 0.7822 -4.7583 -1.9851 14 6 -0.7286 -5.0295 -2.2126 15 7 -1.4127 -4.2476 -1.1677 16 6 -2.6879 -3.8148 -1.2222 17 8 -3.1539 -3.1797 -0.2972 18 6 -3.5224 -4.1137 -2.4115 19 6 -4.8744 -3.7265 -2.6265 20 6 -5.1709 -4.2405 -3.8426 21 6 -6.4866 -4.1317 -4.5692 22 6 -6.5330 -4.6075 -6.0226 23 6 -7.2068 -5.4339 -4.9253 24 8 -4.0651 -4.8600 -4.2780 25 7 -3.1616 -4.7828 -3.4782 26 6 -0.4793 -4.0214 -0.0515 27 1 -0.8828 -4.3790 0.8958 28 6 -0.1331 -2.5231 -0.0007 29 1 -0.4849 0.8400 -0.0004 30 1 2.7721 -3.7455 -0.7027 31 1 2.2867 -3.9689 1.0020 32 1 1.0811 -3.8036 -2.4179 33 1 1.3886 -5.5723 -2.3823 34 1 -0.9474 -6.0909 -2.0963 35 1 -1.0302 -4.6856 -3.2020 36 1 -5.5159 -3.1566 -1.9705 37 1 -7.1024 -3.2732 -4.3008 38 1 -7.1792 -4.0620 -6.7104 39 1 -5.6116 -4.9989 -6.4536 40 1 -6.7286 -6.3692 -4.6343 41 1 -8.2962 -5.4321 -4.8907 42 1 -0.5489 -2.0200 -0.8737 43 1 -0.5426 -2.0814 0.9079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076099187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:32 Heat of formation + Delta-G solvation = 101.573621 kcal Electronic energy + Delta-G solvation = -26888.021128 eV Core-core repulsion = 23131.965627 eV Total energy + Delta-G solvation = -3756.055501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.08999 -40.03876 -37.83878 -37.71084 -34.93561 -33.92109 -32.31007 -31.47384 -30.62203 -28.69004 -26.92428 -25.01220 -24.44564 -23.70145 -22.88381 -22.68973 -21.70098 -20.39594 -19.47146 -18.53502 -17.80266 -17.49737 -16.98832 -16.61103 -15.98652 -15.43902 -15.33806 -14.52487 -14.49600 -14.11369 -13.68809 -13.55819 -13.40052 -12.85040 -12.74830 -12.58832 -12.21531 -11.97960 -11.78038 -11.66911 -11.53732 -11.32894 -11.15977 -10.97091 -10.84881 -10.73979 -10.45445 -10.40091 -10.18293 -10.03996 -9.85671 -9.81210 -9.66936 -9.31744 -8.55330 -8.22753 -6.78104 -5.63885 -3.00715 1.12626 1.65583 2.75830 3.08363 3.43472 3.43710 3.47224 3.48526 3.49691 3.99957 4.08462 4.38272 4.52151 4.53469 4.70283 4.90793 4.96992 5.06466 5.16190 5.23438 5.27300 5.34156 5.46566 5.52887 5.59187 5.63173 5.67553 5.69612 5.80406 5.83987 5.93488 5.97612 6.10480 6.18631 6.41107 6.59944 6.62484 6.63865 6.87624 7.56578 7.64783 7.85943 7.92442 7.99448 8.32913 8.42681 9.26838 9.87876 10.50741 11.45544 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.003485 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.815730 B = 8031.651226 C = 8884.879344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.090 0.910 13 C -0.120 4.120 14 C 0.101 3.899 15 N -0.591 5.591 16 C 0.605 3.395 17 O -0.512 6.512 18 C -0.007 4.007 19 C -0.173 4.173 20 C -0.009 4.009 21 C -0.084 4.084 22 C -0.166 4.166 23 C -0.163 4.163 24 O 0.114 5.886 25 N -0.330 5.330 26 C 0.114 3.886 27 H 0.084 0.916 28 C 0.179 3.821 29 H 0.253 0.747 30 H 0.039 0.961 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.181 0.819 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 -13.869 -10.820 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.130 4.130 12 H 0.108 0.892 13 C -0.158 4.158 14 C -0.021 4.021 15 N -0.325 5.325 16 C 0.390 3.610 17 O -0.385 6.385 18 C -0.167 4.167 19 C -0.195 4.195 20 C -0.072 4.072 21 C -0.103 4.103 22 C -0.203 4.203 23 C -0.200 4.200 24 O 0.040 5.960 25 N -0.033 5.033 26 C 0.011 3.989 27 H 0.102 0.898 28 C 0.053 3.947 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.198 0.802 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.140 -13.833 -10.623 20.695 hybrid contribution -0.144 1.369 0.426 1.441 sum -11.283 -12.464 -10.197 19.663 Atomic orbital electron populations 1.69994 1.04765 1.25184 1.56196 1.24857 0.95694 0.97737 1.02018 0.86208 0.78415 0.83318 0.77837 1.21206 1.21621 1.21136 1.18960 0.90337 0.82241 1.44735 0.90379 1.44122 1.01363 1.00012 1.87397 1.21075 0.93847 0.85666 0.97558 1.22969 0.95327 0.98879 0.95802 0.89226 1.22800 0.94222 1.03097 0.95689 1.22499 0.92657 0.94994 0.91994 1.48388 1.10369 1.53149 1.20560 1.16420 0.80240 0.79945 0.84420 1.90838 1.71727 1.39050 1.36934 1.23573 0.95389 1.01669 0.96036 1.22340 0.95088 1.04962 0.97157 1.23349 0.90261 0.98676 0.94915 1.20425 0.90750 1.00984 0.98146 1.23086 1.03678 1.03120 0.90445 1.23121 1.00168 0.94386 1.02304 1.84743 1.15875 1.56865 1.38470 1.74264 1.10193 1.17851 1.00943 1.22979 0.87286 1.00326 0.88290 0.89806 1.21280 0.84284 0.87030 1.02072 0.93625 0.94248 0.96453 0.89504 0.90390 0.91789 0.89865 0.80181 0.84213 0.87557 0.87712 0.88141 0.87491 0.92633 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 10.23 55.49 0.57 -27.71 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.68 10.25 -15.06 -0.15 -6.83 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.76 3.37 -172.27 -0.58 -16.34 16 10 C 0.15 2.99 6.50 -3.69 -0.02 2.96 16 11 C -0.11 -1.90 3.97 -88.21 -0.35 -2.25 16 12 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.12 -1.90 6.34 -24.64 -0.16 -2.05 16 14 C 0.10 1.61 6.15 -2.43 -0.01 1.60 16 15 N -0.59 -11.43 2.83 -162.59 -0.46 -11.89 16 16 C 0.60 12.31 7.59 -12.11 -0.09 12.22 16 17 O -0.51 -12.05 17.04 5.37 0.09 -11.95 16 18 C -0.01 -0.13 7.01 -82.53 -0.58 -0.70 16 19 C -0.17 -2.39 10.92 -39.08 -0.43 -2.82 16 20 C -0.01 -0.10 6.93 -35.35 -0.25 -0.35 16 21 C -0.08 -0.63 6.27 -91.77 -0.58 -1.20 16 22 C -0.17 -1.00 10.18 -26.73 -0.27 -1.27 16 23 C -0.16 -0.94 10.23 -26.73 -0.27 -1.22 16 24 O 0.11 1.47 10.96 17.23 0.19 1.66 16 25 N -0.33 -5.05 9.30 33.29 0.31 -4.74 16 26 C 0.11 2.35 3.81 -65.88 -0.25 2.10 16 27 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 28 C 0.18 4.67 4.63 -3.60 -0.02 4.65 16 29 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.04 0.78 7.95 -51.93 -0.41 0.37 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.63 7.93 -51.93 -0.41 1.22 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.34 6.26 -51.93 -0.33 1.02 16 36 H 0.18 2.23 8.06 -52.48 -0.42 1.80 16 37 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.68 8.01 -51.93 -0.42 0.27 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.65 6.88 -51.93 -0.36 1.29 16 43 H 0.05 1.39 7.51 -51.93 -0.39 1.00 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -34.50 352.90 -9.20 -43.70 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.09 Total: -0.30 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -3.53 Total: 4.55 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.16 Total: -60.68 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.28 Total: -10.29 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.50 -9.20 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076099187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.278 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds