Wall clock time and date at job start Tue Mar 31 2020 11:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99954 * 2 1 4 4 H 1.48503 * 109.46953 * 240.00225 * 3 2 1 5 5 H 1.48494 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46989 * 120.00008 * 3 2 1 7 7 C 1.38813 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00578 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46644 * 125.28755 * 180.02562 * 9 7 2 11 11 C 1.53525 * 107.05037 * 197.40475 * 10 9 7 12 12 H 1.08993 * 112.80576 * 211.54093 * 11 10 9 13 13 C 1.54784 * 109.68540 * 84.08679 * 11 10 9 14 14 C 1.55167 * 101.35695 * 212.75705 * 13 11 10 15 15 N 1.47353 * 104.79156 * 37.54259 * 14 13 11 16 16 C 1.34775 * 125.51734 * 156.69011 * 15 14 13 17 17 O 1.21500 * 119.99659 * 179.69760 * 16 15 14 18 18 C 1.48329 * 120.00401 * 359.68861 * 16 15 14 19 19 C 1.42270 * 126.93859 * 180.32610 * 18 16 15 20 20 C 1.35313 * 103.92400 * 180.14095 * 19 18 16 21 21 C 1.50701 * 126.66960 * 179.88251 * 20 19 18 22 22 C 1.53001 * 117.51956 * 170.99422 * 21 20 19 23 23 C 1.52999 * 60.00190 * 107.47765 * 22 21 20 24 24 O 1.34020 * 106.66815 * 359.61421 * 20 19 18 25 25 N 1.20910 * 111.84368 * 0.26779 * 24 20 19 26 26 C 1.47252 * 108.95259 * 336.42231 * 15 14 13 27 27 H 1.09001 * 111.94241 * 235.83003 * 26 15 14 28 28 C 1.46496 * 125.28696 * 0.03387 * 9 7 2 29 29 H 0.96994 * 119.99541 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.92129 * 316.75378 * 10 9 7 31 31 H 1.08994 * 109.92053 * 78.05246 * 10 9 7 32 32 H 1.08998 * 111.03417 * 330.96415 * 13 11 10 33 33 H 1.09003 * 111.02939 * 94.84150 * 13 11 10 34 34 H 1.08999 * 110.48223 * 278.68512 * 14 13 11 35 35 H 1.08993 * 110.32810 * 156.32660 * 14 13 11 36 36 H 1.08006 * 128.04093 * 0.02562 * 19 18 16 37 37 H 1.09002 * 115.55088 * 25.29031 * 21 20 19 38 38 H 1.09001 * 117.49733 * 214.97195 * 22 21 20 39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 41 41 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 42 42 H 1.08995 * 109.71849 * 58.29144 * 28 9 7 43 43 H 1.09006 * 109.67035 * 297.71879 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9387 -3.7202 -0.0005 11 6 0.8546 -4.7147 -0.4396 12 1 0.9734 -5.6976 0.0162 13 6 0.7822 -4.7583 -1.9851 14 6 -0.7286 -5.0295 -2.2126 15 7 -1.4127 -4.2476 -1.1677 16 6 -2.6879 -3.8148 -1.2222 17 8 -3.1539 -3.1797 -0.2972 18 6 -3.5224 -4.1137 -2.4115 19 6 -4.8744 -3.7265 -2.6265 20 6 -5.1709 -4.2405 -3.8426 21 6 -6.4866 -4.1317 -4.5692 22 6 -6.5330 -4.6075 -6.0226 23 6 -7.2068 -5.4339 -4.9253 24 8 -4.0651 -4.8600 -4.2780 25 7 -3.1616 -4.7828 -3.4782 26 6 -0.4793 -4.0214 -0.0515 27 1 -0.8828 -4.3790 0.8958 28 6 -0.1331 -2.5231 -0.0007 29 1 -0.4849 0.8400 -0.0004 30 1 2.7721 -3.7455 -0.7027 31 1 2.2867 -3.9689 1.0020 32 1 1.0811 -3.8036 -2.4179 33 1 1.3886 -5.5723 -2.3823 34 1 -0.9474 -6.0909 -2.0963 35 1 -1.0302 -4.6856 -3.2020 36 1 -5.5159 -3.1566 -1.9705 37 1 -7.1024 -3.2732 -4.3008 38 1 -7.1792 -4.0620 -6.7104 39 1 -5.6116 -4.9989 -6.4536 40 1 -6.7286 -6.3692 -4.6343 41 1 -8.2962 -5.4321 -4.8907 42 1 -0.5489 -2.0200 -0.8737 43 1 -0.5426 -2.0814 0.9079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076099187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:31 Heat of formation + Delta-G solvation = 79.602794 kcal Electronic energy + Delta-G solvation = -26888.973854 eV Core-core repulsion = 23131.965627 eV Total energy + Delta-G solvation = -3757.008227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.23725 -41.62124 -39.48860 -38.28148 -36.74144 -35.17098 -34.12123 -32.65545 -32.26402 -30.52272 -28.60976 -26.72341 -26.00484 -24.69633 -24.09336 -23.20095 -22.95057 -22.23441 -20.95222 -19.96580 -18.96613 -18.92445 -18.48539 -18.08556 -17.27873 -16.87139 -16.55975 -16.39344 -15.83447 -15.42396 -15.30078 -15.10173 -14.53075 -14.47900 -14.32194 -13.86373 -13.49692 -13.38284 -13.25234 -13.00347 -12.75768 -12.70740 -12.66208 -12.37495 -12.23321 -12.18504 -11.90445 -11.85147 -11.64010 -11.58513 -11.51160 -11.47013 -11.34392 -10.74547 -10.21132 -9.83478 -8.94060 -7.86603 -5.26278 -0.04377 0.53790 1.40440 1.45384 1.51849 1.56476 1.88438 1.98546 2.46110 2.71470 2.92255 3.21261 3.29776 3.43099 3.55149 3.69754 3.74457 3.87092 3.92220 3.98197 4.05066 4.22742 4.26031 4.28652 4.40110 4.45747 4.54863 4.63681 4.77380 4.79250 4.84275 4.90762 5.02441 5.03613 5.09642 5.11937 5.15591 5.28503 5.39842 5.44123 5.49690 5.72159 6.15136 6.29399 6.75522 6.97564 7.04317 7.74734 8.36032 9.21475 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.003485 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.815730 B = 8031.651226 C = 8884.879344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.073 4.073 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.273 1.273 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.623 5.623 10 C 0.137 3.863 11 C -0.090 4.090 12 H 0.140 0.860 13 C -0.111 4.111 14 C 0.102 3.898 15 N -0.595 5.595 16 C 0.595 3.405 17 O -0.562 6.562 18 C -0.037 4.037 19 C -0.194 4.194 20 C 0.018 3.982 21 C -0.104 4.104 22 C -0.159 4.159 23 C -0.150 4.150 24 O 0.129 5.871 25 N -0.334 5.334 26 C 0.116 3.884 27 H 0.084 0.916 28 C 0.201 3.799 29 H 0.242 0.758 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.007 0.993 43 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 -16.367 -12.901 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.266 4.266 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.349 5.349 10 C 0.012 3.988 11 C -0.109 4.109 12 H 0.157 0.843 13 C -0.149 4.149 14 C -0.019 4.019 15 N -0.327 5.327 16 C 0.382 3.618 17 O -0.439 6.439 18 C -0.194 4.194 19 C -0.217 4.217 20 C -0.045 4.045 21 C -0.123 4.123 22 C -0.196 4.196 23 C -0.187 4.187 24 O 0.052 5.948 25 N -0.034 5.034 26 C 0.012 3.988 27 H 0.102 0.898 28 C 0.075 3.925 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.204 0.796 37 H 0.176 0.824 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.148 0.852 42 H 0.025 0.975 43 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -10.716 -16.393 -12.716 23.351 hybrid contribution -0.284 2.102 1.004 2.347 sum -11.000 -14.291 -11.712 21.504 Atomic orbital electron populations 1.70308 1.06675 1.25081 1.58141 1.25822 0.96496 1.01664 1.02574 0.85083 0.76971 0.78331 0.78541 1.19767 1.22587 1.19833 1.19477 0.91190 0.83411 1.43101 0.89034 1.44428 1.01612 1.01813 1.87095 1.21363 0.95181 0.83681 0.98593 1.23052 0.91087 0.99665 0.97085 0.84255 1.22796 0.94658 1.03127 0.94329 1.22722 0.92315 0.96113 0.90735 1.48514 1.10076 1.53086 1.21034 1.16972 0.80767 0.79078 0.84965 1.90791 1.72931 1.41199 1.38999 1.23260 0.96340 1.04074 0.95763 1.22500 0.94233 1.06322 0.98639 1.23934 0.90678 0.95988 0.93859 1.20736 0.89095 1.03093 0.99367 1.23219 1.03863 1.02698 0.89788 1.23245 1.01340 0.93014 1.01092 1.84710 1.16113 1.56321 1.37636 1.74223 1.10954 1.17688 1.00506 1.22793 0.89761 0.96775 0.89471 0.89782 1.20769 0.84319 0.90388 0.97041 0.94857 0.92656 0.95324 0.93116 0.85429 0.88458 0.90254 0.79622 0.82370 0.85431 0.88273 0.88633 0.85201 0.97483 0.99300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.90 10.23 21.65 0.22 -62.68 16 2 C -0.07 -4.42 5.48 84.86 0.47 -3.95 16 3 Si 0.98 48.14 29.55 68.60 2.03 50.17 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.24 -14.15 10.25 84.03 0.86 -13.29 16 8 H 0.09 4.95 7.83 -2.91 -0.02 4.93 16 9 N -0.62 -33.52 3.37 -698.95 -2.36 -35.88 16 10 C 0.14 5.43 6.50 86.53 0.56 6.00 16 11 C -0.09 -2.87 3.97 -9.23 -0.04 -2.91 16 12 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 13 C -0.11 -3.22 6.34 31.95 0.20 -3.01 16 14 C 0.10 3.08 6.15 86.96 0.53 3.62 16 15 N -0.59 -23.55 2.83 -786.63 -2.23 -25.77 16 16 C 0.60 25.66 7.59 86.93 0.66 26.32 16 17 O -0.56 -28.72 17.04 -3.71 -0.06 -28.78 16 18 C -0.04 -1.29 7.01 42.96 0.30 -0.99 16 19 C -0.19 -5.49 10.92 22.60 0.25 -5.24 16 20 C 0.02 0.40 6.93 25.01 0.17 0.57 16 21 C -0.10 -1.30 6.27 -11.54 -0.07 -1.37 16 22 C -0.16 -1.41 10.18 30.59 0.31 -1.10 16 23 C -0.15 -1.27 10.23 30.60 0.31 -0.96 16 24 O 0.13 3.18 10.96 71.84 0.79 3.97 16 25 N -0.33 -10.07 9.30 -49.51 -0.46 -10.53 16 26 C 0.12 4.87 3.81 45.91 0.17 5.05 16 27 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 28 C 0.20 11.21 4.63 86.67 0.40 11.61 16 29 H 0.24 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.06 2.05 7.95 -2.39 -0.02 2.03 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.85 7.93 -2.39 -0.02 1.84 16 33 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.08 2.48 6.26 -2.39 -0.01 2.47 16 36 H 0.19 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 1.02 8.01 -2.39 -0.02 1.00 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.01 0.45 6.88 -2.39 -0.02 0.43 16 43 H -0.01 -0.74 7.51 -2.38 -0.02 -0.75 16 Total: -1.00 -83.56 352.90 4.05 -79.51 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.02 Total: 9.68 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 5.10 Total: 20.33 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -4.82 Total: -134.87 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.72 Total: -24.82 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -83.56 4.05 -79.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076099187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.109 kcal (2) G-P(sol) polarization free energy of solvation -83.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds