Wall clock time and date at job start Tue Mar 31 2020 11:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00177 * 2 1 4 4 H 1.48497 * 109.47477 * 274.98946 * 3 2 1 5 5 H 1.48503 * 109.46925 * 34.99009 * 3 2 1 6 6 H 1.48501 * 109.47086 * 154.98421 * 3 2 1 7 7 C 1.38813 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99734 * 187.32618 * 7 2 1 9 9 N 1.36931 * 120.00380 * 7.32533 * 7 2 1 10 10 C 1.46647 * 125.29212 * 175.33539 * 9 7 2 11 11 C 1.53524 * 107.05199 * 197.40353 * 10 9 7 12 12 H 1.09001 * 112.80393 * 211.53820 * 11 10 9 13 13 C 1.54784 * 109.68413 * 84.09343 * 11 10 9 14 14 C 1.54956 * 101.45311 * 212.92621 * 13 11 10 15 15 N 1.47343 * 104.89968 * 37.24932 * 14 13 11 16 16 C 1.34779 * 125.51674 * 156.74288 * 15 14 13 17 17 O 1.21591 * 119.99748 * 180.02562 * 16 15 14 18 18 C 1.47505 * 120.00454 * 359.97438 * 16 15 14 19 19 C 1.36824 * 126.94631 * 180.02562 * 18 16 15 20 20 C 1.41261 * 103.84707 * 179.97438 * 19 18 16 21 21 C 1.50700 * 126.70202 * 180.02562 * 20 19 18 22 22 C 1.53006 * 117.50108 * 343.74100 * 21 20 19 23 23 C 1.52999 * 117.49931 * 275.07973 * 21 20 19 24 24 N 1.30122 * 106.59314 * 359.97438 * 20 19 18 25 25 O 1.20889 * 111.97969 * 359.72514 * 24 20 19 26 26 C 1.47252 * 108.95730 * 336.74723 * 15 14 13 27 27 H 1.09011 * 112.72777 * 236.14454 * 26 15 14 28 28 C 1.46499 * 125.28860 * 355.36218 * 9 7 2 29 29 H 0.96996 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.91851 * 316.75684 * 10 9 7 31 31 H 1.08998 * 109.91855 * 77.85718 * 10 9 7 32 32 H 1.09000 * 111.03102 * 330.96407 * 13 11 10 33 33 H 1.08996 * 111.03337 * 94.84379 * 13 11 10 34 34 H 1.08995 * 110.35624 * 156.11186 * 14 13 11 35 35 H 1.09004 * 110.34964 * 278.29280 * 14 13 11 36 36 H 1.08000 * 128.07611 * 359.97438 * 19 18 16 37 37 H 1.08999 * 115.55316 * 129.41525 * 21 20 19 38 38 H 1.08998 * 117.49337 * 359.97438 * 22 21 20 39 39 H 1.08996 * 117.49505 * 145.02156 * 22 21 20 40 40 H 1.08997 * 117.50172 * 214.98513 * 23 21 20 41 41 H 1.09004 * 117.49601 * 359.97438 * 23 21 20 42 42 H 1.09003 * 109.71305 * 58.28712 * 28 9 7 43 43 H 1.08992 * 109.71436 * 297.74718 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0836 -1.2061 0.1187 9 7 1.3340 -2.3832 -0.1523 10 6 1.9553 -3.7066 -0.2669 11 6 0.8961 -4.6521 -0.8509 12 1 1.0031 -5.6771 -0.4960 13 6 0.8858 -4.5338 -2.3942 14 6 -0.6111 -4.7781 -2.7116 15 7 -1.3432 -4.1166 -1.6173 16 6 -2.6178 -3.6827 -1.6780 17 8 -3.1246 -3.1477 -0.7109 18 6 -3.3976 -3.8558 -2.9181 19 6 -4.6925 -3.4712 -3.1357 20 6 -4.9433 -3.8669 -4.4684 21 6 -6.2279 -3.6856 -5.2352 22 6 -7.4909 -3.3668 -4.4325 23 6 -7.3115 -4.7514 -5.0602 24 7 -3.8481 -4.4176 -4.9048 25 8 -2.9768 -4.4180 -4.0669 26 6 -0.4567 -4.0063 -0.4467 27 1 -0.8792 -4.4668 0.4465 28 6 -0.1227 -2.5209 -0.2259 29 1 -0.4850 0.8400 -0.0004 30 1 2.8162 -3.6561 -0.9335 31 1 2.2677 -4.0566 0.7170 32 1 1.1956 -3.5383 -2.7123 33 1 1.5129 -5.3003 -2.8495 34 1 -0.8738 -4.3290 -3.6693 35 1 -0.8268 -5.8465 -2.7226 36 1 -5.3658 -2.9799 -2.4489 37 1 -6.1275 -3.2267 -6.2188 38 1 -7.3926 -3.2887 -3.3498 39 1 -8.2214 -2.6985 -4.8882 40 1 -7.9243 -4.9934 -5.9286 41 1 -7.0951 -5.5840 -4.3908 42 1 -0.5063 -1.9301 -1.0577 43 1 -0.5720 -2.1775 0.7059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076304485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:06 Heat of formation + Delta-G solvation = 98.408006 kcal Electronic energy + Delta-G solvation = -26971.774844 eV Core-core repulsion = 23215.582071 eV Total energy + Delta-G solvation = -3756.192772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.03589 -40.12541 -37.96502 -37.83951 -35.01143 -33.41831 -32.50678 -31.71600 -30.70376 -28.71521 -26.92595 -24.86191 -24.70230 -23.99629 -22.87672 -22.26917 -21.61378 -20.47985 -19.63447 -18.97242 -17.79682 -17.70626 -16.85603 -16.37289 -15.87482 -15.62855 -15.20588 -14.65853 -14.54253 -14.18117 -13.86021 -13.72748 -13.42648 -12.91189 -12.69063 -12.41189 -12.19599 -11.97673 -11.84959 -11.77625 -11.50695 -11.38620 -11.20722 -10.99846 -10.78815 -10.74173 -10.52808 -10.21639 -10.10286 -9.97889 -9.95596 -9.88412 -9.71433 -9.66902 -8.57014 -8.33442 -6.80970 -5.68575 -3.03635 0.86276 1.91791 2.62524 3.21681 3.24279 3.37417 3.41679 3.46545 3.49341 3.79713 4.32610 4.48967 4.51246 4.60798 4.76834 4.82065 4.84501 5.02230 5.12493 5.24321 5.27137 5.31516 5.45426 5.52410 5.54457 5.61460 5.70976 5.74608 5.75281 5.82494 5.84190 5.90226 6.05599 6.13213 6.35357 6.47583 6.57713 6.61598 6.83444 7.46643 7.63434 7.74853 7.88338 7.97916 8.25395 8.30401 9.23544 9.84828 10.47585 11.41568 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.003621 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.410454 B = 7730.551011 C = 8685.815447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.091 0.909 13 C -0.119 4.119 14 C 0.097 3.903 15 N -0.591 5.591 16 C 0.611 3.389 17 O -0.500 6.500 18 C -0.062 4.062 19 C -0.156 4.156 20 C 0.042 3.958 21 C -0.086 4.086 22 C -0.163 4.163 23 C -0.163 4.163 24 N -0.347 5.347 25 O 0.117 5.883 26 C 0.114 3.886 27 H 0.087 0.913 28 C 0.177 3.823 29 H 0.253 0.747 30 H 0.040 0.960 31 H 0.018 0.982 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.182 0.818 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 -12.448 -9.484 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.130 4.130 12 H 0.109 0.891 13 C -0.157 4.157 14 C -0.026 4.026 15 N -0.324 5.324 16 C 0.396 3.604 17 O -0.375 6.375 18 C -0.128 4.128 19 C -0.179 4.179 20 C -0.116 4.116 21 C -0.105 4.105 22 C -0.200 4.200 23 C -0.201 4.201 24 N -0.048 5.048 25 O 0.045 5.955 26 C 0.011 3.989 27 H 0.105 0.895 28 C 0.051 3.949 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.199 0.801 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.944 -12.445 -10.089 18.856 hybrid contribution 0.036 1.318 0.506 1.412 sum -9.908 -11.127 -9.583 17.715 Atomic orbital electron populations 1.70006 1.04804 1.25122 1.55989 1.24858 0.95662 0.97726 1.01924 0.86144 0.78684 0.83752 0.77455 1.21667 1.21765 1.20604 1.19004 0.91123 0.82376 1.43764 0.90282 1.44123 1.01386 1.01105 1.86268 1.21080 0.94025 0.86075 0.97017 1.22987 0.95206 0.99175 0.95642 0.89094 1.22753 0.94040 1.03567 0.95364 1.22486 0.92586 0.97099 0.90422 1.48421 1.10717 1.57525 1.15751 1.16088 0.80451 0.79648 0.84237 1.90917 1.69418 1.42492 1.34649 1.24377 0.95834 1.02876 0.89747 1.22740 0.95523 1.03188 0.96400 1.22601 0.95314 1.00503 0.93167 1.20098 0.84487 1.06066 0.99858 1.23082 0.97777 0.98820 1.00320 1.23042 1.00488 0.92998 1.03572 1.73662 0.98827 1.18383 1.13959 1.85068 1.34091 1.59382 1.16930 1.22970 0.88072 1.00848 0.86971 0.89536 1.21299 0.84504 0.87301 1.01791 0.93657 0.94158 0.96466 0.89344 0.90156 0.90263 0.91196 0.80079 0.85732 0.87955 0.87625 0.87857 0.88456 0.92506 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.52 10.28 55.49 0.57 -26.95 16 2 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 3 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.50 10.23 -15.06 -0.15 -6.65 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 9 N -0.60 -15.15 3.37 -172.28 -0.58 -15.73 16 10 C 0.14 2.83 6.50 -3.69 -0.02 2.80 16 11 C -0.11 -1.76 3.97 -88.21 -0.35 -2.11 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 13 C -0.12 -1.70 6.32 -24.76 -0.16 -1.86 16 14 C 0.10 1.35 6.16 -2.55 -0.02 1.33 16 15 N -0.59 -10.36 2.83 -163.04 -0.46 -10.82 16 16 C 0.61 11.35 7.56 -12.48 -0.09 11.26 16 17 O -0.50 -10.93 17.00 5.29 0.09 -10.84 16 18 C -0.06 -0.98 7.06 -36.32 -0.26 -1.24 16 19 C -0.16 -2.17 10.26 -38.95 -0.40 -2.57 16 20 C 0.04 0.54 6.94 -82.17 -0.57 -0.03 16 21 C -0.09 -0.83 6.33 -91.77 -0.58 -1.41 16 22 C -0.16 -1.23 10.05 -26.69 -0.27 -1.50 16 23 C -0.16 -1.26 10.24 -26.69 -0.27 -1.53 16 24 N -0.35 -5.03 12.04 33.52 0.40 -4.62 16 25 O 0.12 1.73 8.57 15.55 0.13 1.87 16 26 C 0.11 2.18 3.81 -65.88 -0.25 1.92 16 27 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 28 C 0.18 4.38 4.63 -3.60 -0.02 4.37 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.04 0.76 7.95 -51.93 -0.41 0.34 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 1.53 7.93 -51.93 -0.41 1.11 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.09 6.31 -51.93 -0.33 0.76 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.18 2.23 7.62 -52.49 -0.40 1.83 16 37 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.10 0.79 7.33 -51.93 -0.38 0.41 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.61 6.83 -51.93 -0.35 1.25 16 43 H 0.05 1.33 7.58 -51.93 -0.39 0.94 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -33.03 351.51 -9.11 -42.14 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.03 Total: -0.17 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -3.51 Total: 2.56 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.07 Total: -58.12 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.22 Total: -8.97 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.03 -9.11 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076304485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.552 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds