Wall clock time and date at job start Tue Mar 31 2020 11:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00177 * 2 1 4 4 H 1.48497 * 109.47477 * 274.98946 * 3 2 1 5 5 H 1.48503 * 109.46925 * 34.99009 * 3 2 1 6 6 H 1.48501 * 109.47086 * 154.98421 * 3 2 1 7 7 C 1.38813 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99734 * 187.32618 * 7 2 1 9 9 N 1.36931 * 120.00380 * 7.32533 * 7 2 1 10 10 C 1.46647 * 125.29212 * 175.33539 * 9 7 2 11 11 C 1.53524 * 107.05199 * 197.40353 * 10 9 7 12 12 H 1.09001 * 112.80393 * 211.53820 * 11 10 9 13 13 C 1.54784 * 109.68413 * 84.09343 * 11 10 9 14 14 C 1.54956 * 101.45311 * 212.92621 * 13 11 10 15 15 N 1.47343 * 104.89968 * 37.24932 * 14 13 11 16 16 C 1.34779 * 125.51674 * 156.74288 * 15 14 13 17 17 O 1.21591 * 119.99748 * 180.02562 * 16 15 14 18 18 C 1.47505 * 120.00454 * 359.97438 * 16 15 14 19 19 C 1.36824 * 126.94631 * 180.02562 * 18 16 15 20 20 C 1.41261 * 103.84707 * 179.97438 * 19 18 16 21 21 C 1.50700 * 126.70202 * 180.02562 * 20 19 18 22 22 C 1.53006 * 117.50108 * 343.74100 * 21 20 19 23 23 C 1.52999 * 117.49931 * 275.07973 * 21 20 19 24 24 N 1.30122 * 106.59314 * 359.97438 * 20 19 18 25 25 O 1.20889 * 111.97969 * 359.72514 * 24 20 19 26 26 C 1.47252 * 108.95730 * 336.74723 * 15 14 13 27 27 H 1.09011 * 112.72777 * 236.14454 * 26 15 14 28 28 C 1.46499 * 125.28860 * 355.36218 * 9 7 2 29 29 H 0.96996 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.91851 * 316.75684 * 10 9 7 31 31 H 1.08998 * 109.91855 * 77.85718 * 10 9 7 32 32 H 1.09000 * 111.03102 * 330.96407 * 13 11 10 33 33 H 1.08996 * 111.03337 * 94.84379 * 13 11 10 34 34 H 1.08995 * 110.35624 * 156.11186 * 14 13 11 35 35 H 1.09004 * 110.34964 * 278.29280 * 14 13 11 36 36 H 1.08000 * 128.07611 * 359.97438 * 19 18 16 37 37 H 1.08999 * 115.55316 * 129.41525 * 21 20 19 38 38 H 1.08998 * 117.49337 * 359.97438 * 22 21 20 39 39 H 1.08996 * 117.49505 * 145.02156 * 22 21 20 40 40 H 1.08997 * 117.50172 * 214.98513 * 23 21 20 41 41 H 1.09004 * 117.49601 * 359.97438 * 23 21 20 42 42 H 1.09003 * 109.71305 * 58.28712 * 28 9 7 43 43 H 1.08992 * 109.71436 * 297.74718 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0836 -1.2061 0.1187 9 7 1.3340 -2.3832 -0.1523 10 6 1.9553 -3.7066 -0.2669 11 6 0.8961 -4.6521 -0.8509 12 1 1.0031 -5.6771 -0.4960 13 6 0.8858 -4.5338 -2.3942 14 6 -0.6111 -4.7781 -2.7116 15 7 -1.3432 -4.1166 -1.6173 16 6 -2.6178 -3.6827 -1.6780 17 8 -3.1246 -3.1477 -0.7109 18 6 -3.3976 -3.8558 -2.9181 19 6 -4.6925 -3.4712 -3.1357 20 6 -4.9433 -3.8669 -4.4684 21 6 -6.2279 -3.6856 -5.2352 22 6 -7.4909 -3.3668 -4.4325 23 6 -7.3115 -4.7514 -5.0602 24 7 -3.8481 -4.4176 -4.9048 25 8 -2.9768 -4.4180 -4.0669 26 6 -0.4567 -4.0063 -0.4467 27 1 -0.8792 -4.4668 0.4465 28 6 -0.1227 -2.5209 -0.2259 29 1 -0.4850 0.8400 -0.0004 30 1 2.8162 -3.6561 -0.9335 31 1 2.2677 -4.0566 0.7170 32 1 1.1956 -3.5383 -2.7123 33 1 1.5129 -5.3003 -2.8495 34 1 -0.8738 -4.3290 -3.6693 35 1 -0.8268 -5.8465 -2.7226 36 1 -5.3658 -2.9799 -2.4489 37 1 -6.1275 -3.2267 -6.2188 38 1 -7.3926 -3.2887 -3.3498 39 1 -8.2214 -2.6985 -4.8882 40 1 -7.9243 -4.9934 -5.9286 41 1 -7.0951 -5.5840 -4.3908 42 1 -0.5063 -1.9301 -1.0577 43 1 -0.5720 -2.1775 0.7059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076304485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:05 Heat of formation + Delta-G solvation = 77.665235 kcal Electronic energy + Delta-G solvation = -26972.674318 eV Core-core repulsion = 23215.582071 eV Total energy + Delta-G solvation = -3757.092246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.14842 -41.58867 -39.49722 -38.57641 -36.71446 -34.48591 -34.20338 -33.07568 -32.25559 -30.44643 -28.51558 -26.59136 -25.80602 -25.36711 -23.84949 -23.11469 -22.76930 -22.19585 -20.95333 -20.28459 -19.04572 -18.92876 -18.76093 -17.53339 -17.28125 -17.03005 -16.39640 -16.23858 -15.75295 -15.42088 -15.34099 -15.10531 -14.94937 -14.39482 -14.30121 -13.73424 -13.42639 -13.24987 -13.17773 -12.95938 -12.94539 -12.73212 -12.66996 -12.42626 -12.25226 -12.12576 -11.87486 -11.83774 -11.54136 -11.47585 -11.45828 -11.41392 -11.00800 -10.73847 -10.70561 -9.80402 -8.89131 -7.85488 -5.22389 -0.37390 0.86741 1.31968 1.43176 1.45392 1.54659 1.84149 1.97067 2.48281 2.61753 2.92842 3.21931 3.31816 3.50051 3.60399 3.74215 3.77470 3.79610 3.93270 3.99180 4.03408 4.15079 4.29233 4.33881 4.37327 4.47812 4.58411 4.67911 4.71234 4.78606 4.84676 4.95947 4.97828 5.06945 5.07428 5.15463 5.18513 5.20752 5.44139 5.50977 5.55059 5.77250 6.19133 6.27508 6.70821 6.95440 7.08019 7.78767 8.39691 9.23354 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.003621 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.410454 B = 7730.551011 C = 8685.815447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.261 1.261 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.623 5.623 10 C 0.136 3.864 11 C -0.090 4.090 12 H 0.141 0.859 13 C -0.112 4.112 14 C 0.095 3.905 15 N -0.593 5.593 16 C 0.606 3.394 17 O -0.548 6.548 18 C -0.079 4.079 19 C -0.151 4.151 20 C 0.052 3.948 21 C -0.110 4.110 22 C -0.154 4.154 23 C -0.152 4.152 24 N -0.358 5.358 25 O 0.117 5.883 26 C 0.117 3.883 27 H 0.090 0.910 28 C 0.197 3.803 29 H 0.242 0.758 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.192 0.808 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.091 0.909 42 H 0.011 0.989 43 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 -14.747 -11.228 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.185 1.185 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.109 4.109 12 H 0.159 0.841 13 C -0.150 4.150 14 C -0.026 4.026 15 N -0.324 5.324 16 C 0.393 3.607 17 O -0.427 6.427 18 C -0.145 4.145 19 C -0.173 4.173 20 C -0.106 4.106 21 C -0.129 4.129 22 C -0.191 4.191 23 C -0.190 4.190 24 N -0.060 5.060 25 O 0.046 5.954 26 C 0.014 3.986 27 H 0.108 0.892 28 C 0.070 3.930 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.209 0.791 37 H 0.153 0.847 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.109 0.891 42 H 0.029 0.971 43 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -9.447 -14.803 -11.857 21.189 hybrid contribution -0.103 2.012 1.039 2.267 sum -9.550 -12.791 -10.818 19.284 Atomic orbital electron populations 1.70295 1.06563 1.24972 1.58056 1.25748 0.96426 1.01392 1.02688 0.85071 0.78017 0.79190 0.77175 1.21535 1.22646 1.18545 1.19478 0.91803 0.83620 1.41971 0.89205 1.44430 1.01820 1.02773 1.85928 1.21371 0.95398 0.84119 0.98043 1.23068 0.90918 1.00293 0.96640 0.84094 1.22756 0.94859 1.03175 0.94163 1.22778 0.91845 0.98874 0.89098 1.48516 1.10401 1.57193 1.16312 1.16436 0.80846 0.78825 0.84639 1.90880 1.70633 1.44578 1.36586 1.23938 0.96207 1.04796 0.89511 1.23031 0.94980 1.02129 0.97167 1.23073 0.96019 0.98837 0.92689 1.20322 0.83640 1.08480 1.00449 1.23214 0.96590 0.99219 1.00099 1.23144 0.99065 0.92612 1.04138 1.73638 0.99400 1.19075 1.13904 1.85054 1.34286 1.59635 1.16435 1.22762 0.90543 0.96978 0.88341 0.89221 1.20830 0.84295 0.90799 0.97057 0.94846 0.92754 0.95510 0.93020 0.85331 0.90234 0.87291 0.79059 0.84695 0.88356 0.85517 0.85640 0.89090 0.97080 0.99289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 10.28 21.65 0.22 -60.74 16 2 C -0.07 -4.11 5.47 84.86 0.46 -3.65 16 3 Si 0.98 47.20 29.56 68.60 2.03 49.23 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.24 -13.57 10.23 84.03 0.86 -12.71 16 8 H 0.09 4.76 7.84 -2.91 -0.02 4.74 16 9 N -0.62 -32.12 3.37 -698.98 -2.36 -34.48 16 10 C 0.14 5.09 6.50 86.53 0.56 5.65 16 11 C -0.09 -2.61 3.97 -9.23 -0.04 -2.64 16 12 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 13 C -0.11 -2.85 6.32 31.87 0.20 -2.65 16 14 C 0.10 2.43 6.16 86.89 0.54 2.97 16 15 N -0.59 -20.87 2.83 -788.00 -2.23 -23.10 16 16 C 0.61 23.44 7.56 86.69 0.66 24.09 16 17 O -0.55 -25.63 17.00 -4.00 -0.07 -25.70 16 18 C -0.08 -2.52 7.06 24.38 0.17 -2.35 16 19 C -0.15 -4.20 10.26 22.68 0.23 -3.97 16 20 C 0.05 1.28 6.94 43.56 0.30 1.59 16 21 C -0.11 -1.92 6.33 -11.54 -0.07 -1.99 16 22 C -0.15 -1.98 10.05 30.62 0.31 -1.68 16 23 C -0.15 -1.96 10.24 30.62 0.31 -1.65 16 24 N -0.36 -10.01 12.04 -48.88 -0.59 -10.60 16 25 O 0.12 3.37 8.57 65.82 0.56 3.94 16 26 C 0.12 4.51 3.81 45.91 0.17 4.68 16 27 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 28 C 0.20 10.35 4.63 86.66 0.40 10.75 16 29 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.05 1.91 7.95 -2.39 -0.02 1.89 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.73 7.93 -2.39 -0.02 1.71 16 33 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.07 6.31 -2.39 -0.02 2.05 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.19 4.79 7.62 -2.91 -0.02 4.77 16 37 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.10 1.36 7.33 -2.39 -0.02 1.34 16 39 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.01 0.67 6.83 -2.39 -0.02 0.66 16 43 H -0.01 -0.70 7.58 -2.39 -0.02 -0.71 16 Total: -1.00 -78.96 351.51 3.67 -75.29 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.03 Total: 9.70 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 5.07 Total: 16.45 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -4.95 Total: -128.92 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.50 Total: -21.76 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -78.96 3.67 -75.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076304485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.960 kcal (2) G-P(sol) polarization free energy of solvation -78.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds