Wall clock time and date at job start Tue Mar 31 2020 11:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47333 * 239.99663 * 3 2 1 5 5 H 1.48496 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 119.99648 * 3 2 1 7 7 C 1.38819 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.46700 * 125.32021 * 179.71325 * 9 7 2 11 11 C 1.54042 * 106.83100 * 162.08285 * 10 9 7 12 12 H 1.08996 * 113.43747 * 263.59464 * 11 10 9 13 13 C 1.55122 * 108.25655 * 135.80858 * 11 10 9 14 14 C 1.54852 * 101.77640 * 286.10378 * 13 11 10 15 15 N 1.47394 * 104.81373 * 322.81202 * 14 13 11 16 16 C 1.34780 * 125.59106 * 204.60818 * 15 14 13 17 17 O 1.21617 * 119.99850 * 179.97438 * 16 15 14 18 18 C 1.47419 * 119.99937 * 0.02562 * 16 15 14 19 19 N 1.36073 * 126.44747 * 359.68447 * 18 16 15 20 20 C 1.29934 * 108.47360 * 179.86425 * 19 18 16 21 21 O 1.34044 * 109.24423 * 0.40604 * 20 19 18 22 22 C 1.34251 * 108.22926 * 359.74786 * 21 20 19 23 23 C 1.50698 * 126.52656 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.50064 * 8.70021 * 23 22 21 25 25 C 1.53000 * 117.49952 * 300.04129 * 23 22 21 26 26 C 1.46735 * 108.82145 * 24.60709 * 15 14 13 27 27 H 1.09001 * 111.83778 * 235.81420 * 26 15 14 28 28 C 1.46636 * 125.32409 * 0.02562 * 9 7 2 29 29 H 0.97001 * 120.00483 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.99328 * 281.43035 * 10 9 7 31 31 H 1.09007 * 109.98670 * 42.74451 * 10 9 7 32 32 H 1.08992 * 110.96584 * 44.22898 * 13 11 10 33 33 H 1.09002 * 110.96509 * 167.94444 * 13 11 10 34 34 H 1.08996 * 110.36881 * 81.64639 * 14 13 11 35 35 H 1.08999 * 110.36721 * 203.97694 * 14 13 11 36 36 H 1.08002 * 125.37766 * 180.12156 * 20 19 18 37 37 H 1.09006 * 115.54950 * 154.37475 * 23 22 21 38 38 H 1.09002 * 117.49504 * 0.02562 * 24 23 22 39 39 H 1.09006 * 117.49456 * 145.01835 * 24 23 22 40 40 H 1.08998 * 117.50045 * 214.97974 * 25 23 22 41 41 H 1.09001 * 117.50208 * 359.97438 * 25 23 22 42 42 H 1.09005 * 109.75361 * 300.65703 * 28 9 7 43 43 H 1.08998 * 109.75812 * 61.35757 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.9381 -3.7211 -0.0049 11 6 0.8513 -4.7132 0.4507 12 1 0.8995 -4.9511 1.5133 13 6 0.9037 -5.9528 -0.4804 14 6 0.2761 -5.3969 -1.7823 15 7 -0.7924 -4.4891 -1.3278 16 6 -1.8845 -4.1450 -2.0388 17 8 -2.7056 -3.3848 -1.5624 18 6 -2.0842 -4.6910 -3.3935 19 7 -1.2523 -5.5424 -4.0527 20 6 -1.7661 -5.8002 -5.2180 21 8 -2.9193 -5.1299 -5.3505 22 6 -3.1323 -4.4336 -4.2226 23 6 -4.3085 -3.5381 -3.9299 24 6 -5.4723 -3.5533 -4.9230 25 6 -4.5359 -2.3442 -4.8592 26 6 -0.4723 -4.0213 0.0256 27 1 -1.2770 -4.2346 0.7293 28 6 -0.1345 -2.5241 -0.0005 29 1 -0.4851 0.8400 0.0004 30 1 2.2742 -3.9727 -1.0108 31 1 2.7800 -3.7471 0.6870 32 1 1.9325 -6.2712 -0.6483 33 1 0.3058 -6.7697 -0.0763 34 1 1.0210 -4.8479 -2.3582 35 1 -0.1429 -6.2080 -2.3778 36 1 -1.3303 -6.4483 -5.9640 37 1 -4.5489 -3.4075 -2.8747 38 1 -5.3874 -4.2114 -5.7878 39 1 -6.4784 -3.4324 -4.5211 40 1 -4.9262 -1.4282 -4.4156 41 1 -3.8345 -2.2061 -5.6821 42 1 -0.5505 -2.0371 0.8814 43 1 -0.5463 -2.0691 -0.9013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076429393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:55 Heat of formation + Delta-G solvation = 38.092809 kcal Electronic energy + Delta-G solvation = -27477.005468 eV Core-core repulsion = 23718.197233 eV Total energy + Delta-G solvation = -3758.808235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.49580 -41.53947 -39.33787 -38.18972 -36.58288 -35.82622 -33.89387 -32.47023 -31.44640 -30.52163 -28.07697 -26.64957 -25.72569 -24.67146 -23.54957 -23.30726 -22.67265 -21.86476 -20.94227 -20.39869 -18.98326 -18.51796 -17.88458 -17.80663 -17.15349 -16.87678 -16.47165 -16.17326 -15.79284 -15.69433 -15.47923 -14.81830 -14.58267 -14.47565 -14.15488 -13.93331 -13.49073 -13.37012 -13.00799 -12.92627 -12.84260 -12.56816 -12.51807 -12.43725 -12.21915 -12.06803 -11.99606 -11.87123 -11.75501 -11.63422 -11.49050 -11.35423 -11.01579 -10.73034 -9.94183 -9.54482 -8.91965 -7.85050 -5.24068 -0.02692 1.07613 1.40562 1.44539 1.45624 1.52049 1.95740 2.21889 2.46951 2.78492 3.05023 3.31086 3.32048 3.43745 3.57722 3.70137 3.79328 3.86629 3.92956 3.99209 4.09544 4.27693 4.39160 4.43301 4.52170 4.59351 4.64337 4.64961 4.75089 4.84806 4.89209 4.93548 5.05335 5.11428 5.12246 5.16201 5.22934 5.31555 5.39769 5.42622 5.62075 5.76487 6.16990 6.38173 6.56489 7.05139 7.08763 7.76802 8.39445 9.23439 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.004647 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.569173 B = 6024.243093 C = 7358.429057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.088 0.912 9 N -0.624 5.624 10 C 0.136 3.864 11 C -0.096 4.096 12 H 0.123 0.877 13 C -0.107 4.107 14 C 0.106 3.894 15 N -0.590 5.590 16 C 0.597 3.403 17 O -0.569 6.569 18 C -0.090 4.090 19 N -0.485 5.485 20 C 0.198 3.802 21 O -0.194 6.194 22 C 0.074 3.926 23 C -0.116 4.116 24 C -0.133 4.133 25 C -0.161 4.161 26 C 0.116 3.884 27 H 0.081 0.919 28 C 0.197 3.803 29 H 0.244 0.756 30 H 0.024 0.976 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.312 0.688 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.005 0.995 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 -17.503 -11.599 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.011 3.989 11 C -0.115 4.115 12 H 0.141 0.859 13 C -0.145 4.145 14 C -0.015 4.015 15 N -0.321 5.321 16 C 0.386 3.614 17 O -0.449 6.449 18 C -0.208 4.208 19 N -0.213 5.213 20 C -0.030 4.030 21 O -0.080 6.080 22 C 0.017 3.983 23 C -0.134 4.134 24 C -0.170 4.170 25 C -0.198 4.198 26 C 0.011 3.989 27 H 0.099 0.901 28 C 0.071 3.929 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.327 0.673 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.023 0.977 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -5.404 -17.128 -11.159 21.145 hybrid contribution -0.172 1.860 -0.035 1.869 sum -5.576 -15.268 -11.194 19.736 Atomic orbital electron populations 1.70287 1.06635 1.25164 1.58079 1.25786 0.96503 1.01510 1.02517 0.85104 0.77035 0.78427 0.78488 1.20224 1.22352 1.19534 1.19478 0.91125 0.83642 1.43263 0.89382 1.44539 1.01841 1.01690 1.87001 1.21569 0.95292 0.84046 0.97997 1.23177 0.91482 0.95362 1.01499 0.85907 1.22823 1.03320 0.95793 0.92515 1.22619 0.88398 0.92765 0.97753 1.48195 1.21352 1.46431 1.16139 1.16848 0.80908 0.80191 0.83440 1.90764 1.45513 1.37405 1.71267 1.21104 0.96244 1.05910 0.97535 1.70765 1.29065 1.14707 1.06793 1.29353 0.81054 0.96133 0.96484 1.84332 1.39745 1.47849 1.36123 1.22638 0.97128 0.94687 0.83803 1.20709 0.93568 0.99673 0.99497 1.23219 0.94682 0.99646 0.99409 1.23162 1.03084 0.93212 1.00354 1.22452 0.98023 0.94964 0.83434 0.90118 1.20758 0.84186 0.90672 0.97296 0.94709 0.95818 0.93368 0.86974 0.88407 0.93401 0.87190 0.67306 0.85237 0.86650 0.85595 0.87086 0.88371 0.97661 0.98282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.88 10.24 21.65 0.22 -62.66 16 2 C -0.07 -4.29 5.48 84.86 0.47 -3.83 16 3 Si 0.98 48.38 29.55 68.60 2.03 50.41 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.25 -14.60 10.25 84.03 0.86 -13.74 16 8 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 9 N -0.62 -34.35 3.38 -698.12 -2.36 -36.70 16 10 C 0.14 5.60 6.45 86.69 0.56 6.15 16 11 C -0.10 -3.19 4.33 -8.93 -0.04 -3.22 16 12 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 13 C -0.11 -2.59 6.34 31.95 0.20 -2.39 16 14 C 0.11 3.30 5.68 86.84 0.49 3.80 16 15 N -0.59 -23.72 2.98 -789.97 -2.36 -26.08 16 16 C 0.60 25.76 7.40 86.66 0.64 26.41 16 17 O -0.57 -28.35 14.76 -4.08 -0.06 -28.41 16 18 C -0.09 -3.13 6.81 40.41 0.28 -2.85 16 19 N -0.48 -13.27 8.43 -305.15 -2.57 -15.84 16 20 C 0.20 3.48 13.19 130.52 1.72 5.20 16 21 O -0.19 -4.24 10.50 0.49 0.01 -4.23 16 22 C 0.07 2.21 6.90 25.18 0.17 2.38 16 23 C -0.12 -3.24 5.61 -11.54 -0.06 -3.31 16 24 C -0.13 -2.43 10.18 30.62 0.31 -2.12 16 25 C -0.16 -3.76 10.24 30.62 0.31 -3.45 16 26 C 0.12 4.94 3.60 45.90 0.17 5.11 16 27 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 28 C 0.20 11.08 4.91 86.52 0.43 11.50 16 29 H 0.24 15.75 8.31 -92.71 -0.77 14.97 16 30 H 0.02 0.97 6.52 -2.39 -0.02 0.96 16 31 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.11 2.14 8.08 -2.39 -0.02 2.12 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 35 H 0.11 3.03 6.12 -2.39 -0.01 3.02 16 36 H 0.31 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.13 4.31 6.66 -2.38 -0.02 4.30 16 38 H 0.12 1.76 8.01 -2.39 -0.02 1.74 16 39 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.01 0.33 7.34 -2.38 -0.02 0.32 16 43 H 0.00 -0.07 6.64 -2.39 -0.02 -0.08 16 Total: -1.00 -86.61 346.27 2.45 -84.17 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.03 Total: 13.71 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 6.51 Total: 25.64 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -7.06 Total: -141.27 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.06 Total: -32.65 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -86.61 2.45 -84.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076429393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.259 kcal (2) G-P(sol) polarization free energy of solvation -86.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds