Wall clock time and date at job start Tue Mar 31 2020 11:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38353 * 119.46042 * 2 1 4 4 C 1.38357 * 119.30193 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.29104 * 359.75780 * 4 3 2 6 6 C 1.47834 * 120.56023 * 180.24189 * 5 4 3 7 7 O 1.21558 * 120.00074 * 314.93737 * 6 5 4 8 8 N 1.34782 * 120.00166 * 134.93220 * 6 5 4 9 9 C 1.44958 * 117.31842 * 4.86915 * 8 6 5 10 10 C 1.51778 * 111.99427 * 203.53744 * 9 8 6 11 11 O 1.41322 * 111.63627 * 319.67514 * 10 9 8 12 12 C 1.40783 * 118.40000 * 56.76716 * 11 10 9 13 13 H 1.09009 * 109.34596 * 188.31116 * 12 11 10 14 14 C 1.54197 * 110.22892 * 67.70582 * 12 11 10 15 15 N 1.46878 * 106.39169 * 210.33560 * 14 12 11 16 16 C 1.36932 * 125.36529 * 197.82030 * 15 14 12 17 17 H 1.08007 * 120.00045 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00008 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99855 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47357 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46868 * 120.00200 * 20 18 16 23 23 H 1.48508 * 109.46820 * 240.00137 * 20 18 16 24 24 C 1.46793 * 109.26951 * 17.83890 * 15 14 12 25 25 C 1.44537 * 117.32496 * 185.12755 * 8 6 5 26 26 H 1.09004 * 109.48924 * 285.85678 * 25 8 6 27 27 C 1.39515 * 118.87891 * 0.50970 * 5 4 3 28 28 N 1.31697 * 120.56920 * 359.47453 * 27 5 4 29 29 H 1.09001 * 109.46529 * 269.96931 * 1 2 3 30 30 H 1.08996 * 109.47386 * 29.97333 * 1 2 3 31 31 H 1.09004 * 109.46653 * 149.97394 * 1 2 3 32 32 H 1.08004 * 120.34591 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.85206 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.00179 * 324.33055 * 9 8 6 35 35 H 1.09000 * 109.00052 * 83.09259 * 9 8 6 36 36 H 1.09000 * 109.15799 * 199.02003 * 10 9 8 37 37 H 1.08995 * 108.87834 * 80.13896 * 10 9 8 38 38 H 1.08995 * 110.07200 * 91.10242 * 14 12 11 39 39 H 1.08995 * 110.11834 * 329.59082 * 14 12 11 40 40 H 0.96996 * 120.00335 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.82680 * 239.35576 * 24 15 14 42 42 H 1.08997 * 109.82751 * 118.39135 * 24 15 14 43 43 H 1.08004 * 119.71632 * 179.75390 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0340 0.0041 6 6 5.7083 -0.0966 0.0092 7 8 6.3495 0.6191 -0.7353 8 7 6.3439 -0.9471 0.8393 9 6 5.5236 -1.8492 1.6234 10 6 6.2375 -2.3227 2.8763 11 8 7.6003 -2.6008 2.6260 12 6 8.4048 -1.5778 2.0892 13 1 9.3779 -1.9880 1.8190 14 6 8.5874 -0.4464 3.1207 15 7 8.7432 0.7949 2.3512 16 6 9.2636 1.9662 2.8331 17 1 9.3378 2.8298 2.1887 18 6 9.6959 2.0437 4.1500 19 7 9.6060 0.9912 4.9352 20 14 10.4053 3.6418 4.8076 21 1 10.3962 4.6667 3.7331 22 1 9.5828 4.1154 5.9497 23 1 11.8003 3.4137 5.2631 24 6 8.2526 0.5822 0.9841 25 6 7.7872 -0.8810 0.8791 26 1 8.1969 -1.3282 -0.0267 27 6 3.4717 -1.2042 -0.0017 28 7 2.1559 -1.1487 -0.0011 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6443 2.1381 -0.0004 33 1 4.1274 2.1265 -0.0001 34 1 4.6053 -1.3363 1.9088 35 1 5.2692 -2.7170 1.0148 36 1 5.7515 -3.2261 3.2450 37 1 6.1666 -1.5458 3.6375 38 1 9.4784 -0.6282 3.7216 39 1 7.7099 -0.3801 3.7638 40 1 9.9084 1.0452 5.8552 41 1 9.0553 0.7671 0.2703 42 1 7.4161 1.2515 0.7831 43 1 3.9670 -2.1640 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083002447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:29 Heat of formation + Delta-G solvation = 15.097697 kcal Electronic energy + Delta-G solvation = -27555.809932 eV Core-core repulsion = 23796.004553 eV Total energy + Delta-G solvation = -3759.805378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28977 -40.02425 -38.30313 -36.00333 -35.03657 -33.33232 -32.59073 -32.25141 -30.09596 -28.71462 -27.96348 -27.01376 -24.80137 -24.10453 -23.25023 -22.89112 -21.14099 -20.04745 -18.81096 -17.85694 -17.23986 -16.82261 -16.50696 -16.10151 -15.82120 -15.46561 -14.90457 -14.69724 -14.56954 -14.44601 -13.96200 -13.85104 -13.57093 -13.30081 -12.90383 -12.71320 -12.54026 -12.51848 -12.22116 -12.17161 -12.02977 -11.43336 -11.13465 -10.91685 -10.76394 -10.51962 -10.45947 -10.11951 -10.07232 -9.87944 -9.79546 -9.50376 -9.17195 -8.99031 -8.64687 -8.33820 -6.85196 -5.70784 -3.09630 0.57489 1.02869 2.66544 2.95534 3.38272 3.44222 3.46787 3.55393 3.96125 4.04330 4.35366 4.45417 4.48832 4.63925 4.76667 4.80679 5.01566 5.07180 5.11528 5.26756 5.27019 5.30088 5.36906 5.43512 5.52851 5.61919 5.66056 5.69828 5.77819 5.85804 5.88779 5.91987 6.08028 6.18682 6.36900 6.46819 6.74700 7.02284 7.31545 7.33055 7.57868 7.66186 7.70061 7.84484 8.18309 8.28568 9.18879 9.79083 10.41337 11.36015 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.004083 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.024942 B = 6856.856683 C = 7609.802382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.139 3.861 3 C -0.176 4.176 4 C -0.019 4.019 5 C -0.181 4.181 6 C 0.557 3.443 7 O -0.517 6.517 8 N -0.580 5.580 9 C 0.073 3.927 10 C 0.057 3.943 11 O -0.368 6.368 12 C 0.068 3.932 13 H 0.115 0.885 14 C 0.140 3.860 15 N -0.603 5.603 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.130 3.870 25 C 0.111 3.889 26 H 0.075 0.925 27 C 0.131 3.869 28 N -0.487 5.487 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.961 -6.211 -7.979 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.196 4.196 4 C -0.045 4.045 5 C -0.187 4.187 6 C 0.344 3.656 7 O -0.393 6.393 8 N -0.313 5.313 9 C -0.051 4.051 10 C -0.020 4.020 11 O -0.285 6.285 12 C 0.009 3.991 13 H 0.133 0.867 14 C 0.014 3.986 15 N -0.331 5.331 16 C -0.350 4.350 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.004 3.996 25 C 0.008 3.992 26 H 0.093 0.907 27 C -0.027 4.027 28 N -0.196 5.196 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.898 -6.728 -8.122 19.078 hybrid contribution 0.693 1.898 0.407 2.061 sum -15.205 -4.831 -7.715 17.721 Atomic orbital electron populations 1.20762 0.88527 1.03648 1.03356 1.21504 0.97268 0.88369 0.92662 1.21936 0.94400 0.99586 1.03654 1.21678 0.94178 0.97661 0.91018 1.20978 0.94796 0.95758 1.07139 1.18161 0.86572 0.80147 0.80737 1.90799 1.67055 1.41761 1.39668 1.46645 1.06521 1.36859 1.41261 1.21935 0.94912 0.93533 0.94704 1.22213 0.82736 1.02049 0.94992 1.86861 1.19627 1.38921 1.83119 1.23091 0.92925 0.90159 0.92926 0.86699 1.22068 1.02506 0.82616 0.91392 1.44270 1.72891 1.09597 1.06330 1.19122 1.32835 0.88326 0.94747 0.90264 1.24797 1.01624 0.97887 0.96245 1.69871 1.52974 1.27706 1.06583 0.85997 0.78472 0.82408 0.78639 1.20475 1.21796 1.21646 1.21644 0.97534 0.91897 0.88496 1.21619 0.78511 0.99319 0.99798 0.90737 1.23219 0.89212 0.97811 0.92473 1.67569 1.09371 1.29077 1.13623 0.90062 0.90509 0.90270 0.84094 0.83804 0.89861 0.91322 0.87655 0.92241 0.88242 0.96038 0.93742 0.94571 0.93356 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 36.01 0.37 -0.35 16 2 C 0.14 1.43 6.78 -82.51 -0.56 0.87 16 3 C -0.18 -1.78 9.72 -39.50 -0.38 -2.17 16 4 C -0.02 -0.24 9.85 -38.87 -0.38 -0.62 16 5 C -0.18 -2.52 4.91 -104.83 -0.51 -3.03 16 6 C 0.56 9.44 6.48 -12.33 -0.08 9.36 16 7 O -0.52 -10.33 14.47 5.31 0.08 -10.25 16 8 N -0.58 -9.60 3.09 -170.24 -0.53 -10.12 16 9 C 0.07 0.96 4.90 -5.49 -0.03 0.93 16 10 C 0.06 0.83 6.73 36.54 0.25 1.07 16 11 O -0.37 -6.42 10.25 -34.35 -0.35 -6.77 16 12 C 0.07 1.31 3.91 -26.27 -0.10 1.21 16 13 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 14 C 0.14 3.38 5.26 -3.21 -0.02 3.37 16 15 N -0.60 -15.70 3.39 -171.41 -0.58 -16.28 16 16 C -0.22 -6.28 10.25 -15.06 -0.15 -6.44 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 19 N -0.92 -26.87 10.18 55.49 0.56 -26.30 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.13 2.94 6.06 -3.41 -0.02 2.92 16 25 C 0.11 2.09 3.27 -68.67 -0.22 1.87 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 C 0.13 1.58 8.77 -17.13 -0.15 1.42 16 28 N -0.49 -5.78 10.25 -9.14 -0.09 -5.88 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.08 1.03 5.82 -51.93 -0.30 0.73 16 35 H 0.07 0.73 6.63 -51.93 -0.34 0.38 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 38 H 0.10 2.71 6.25 -51.93 -0.32 2.39 16 39 H 0.02 0.57 6.48 -51.93 -0.34 0.23 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 1.16 5.47 -51.93 -0.28 0.88 16 43 H 0.17 1.67 5.69 -52.48 -0.30 1.38 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -33.39 337.31 -8.54 -41.93 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.59 Total: 1.38 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.10 Total: 10.02 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.64 Total: -58.58 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.28 Total: -17.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.39 -8.54 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083002447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.030 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds