Wall clock time and date at job start Tue Mar 31 2020 11:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38353 * 119.46042 * 2 1 4 4 C 1.38357 * 119.30193 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.29104 * 359.75780 * 4 3 2 6 6 C 1.47834 * 120.56023 * 180.24189 * 5 4 3 7 7 O 1.21558 * 120.00074 * 314.93737 * 6 5 4 8 8 N 1.34782 * 120.00166 * 134.93220 * 6 5 4 9 9 C 1.44958 * 117.31842 * 4.86915 * 8 6 5 10 10 C 1.51778 * 111.99427 * 203.53744 * 9 8 6 11 11 O 1.41322 * 111.63627 * 319.67514 * 10 9 8 12 12 C 1.40783 * 118.40000 * 56.76716 * 11 10 9 13 13 H 1.09009 * 109.34596 * 188.31116 * 12 11 10 14 14 C 1.54197 * 110.22892 * 67.70582 * 12 11 10 15 15 N 1.46878 * 106.39169 * 210.33560 * 14 12 11 16 16 C 1.36932 * 125.36529 * 197.82030 * 15 14 12 17 17 H 1.08007 * 120.00045 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00008 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99855 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47357 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46868 * 120.00200 * 20 18 16 23 23 H 1.48508 * 109.46820 * 240.00137 * 20 18 16 24 24 C 1.46793 * 109.26951 * 17.83890 * 15 14 12 25 25 C 1.44537 * 117.32496 * 185.12755 * 8 6 5 26 26 H 1.09004 * 109.48924 * 285.85678 * 25 8 6 27 27 C 1.39515 * 118.87891 * 0.50970 * 5 4 3 28 28 N 1.31697 * 120.56920 * 359.47453 * 27 5 4 29 29 H 1.09001 * 109.46529 * 269.96931 * 1 2 3 30 30 H 1.08996 * 109.47386 * 29.97333 * 1 2 3 31 31 H 1.09004 * 109.46653 * 149.97394 * 1 2 3 32 32 H 1.08004 * 120.34591 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.85206 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.00179 * 324.33055 * 9 8 6 35 35 H 1.09000 * 109.00052 * 83.09259 * 9 8 6 36 36 H 1.09000 * 109.15799 * 199.02003 * 10 9 8 37 37 H 1.08995 * 108.87834 * 80.13896 * 10 9 8 38 38 H 1.08995 * 110.07200 * 91.10242 * 14 12 11 39 39 H 1.08995 * 110.11834 * 329.59082 * 14 12 11 40 40 H 0.96996 * 120.00335 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.82680 * 239.35576 * 24 15 14 42 42 H 1.08997 * 109.82751 * 118.39135 * 24 15 14 43 43 H 1.08004 * 119.71632 * 179.75390 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0340 0.0041 6 6 5.7083 -0.0966 0.0092 7 8 6.3495 0.6191 -0.7353 8 7 6.3439 -0.9471 0.8393 9 6 5.5236 -1.8492 1.6234 10 6 6.2375 -2.3227 2.8763 11 8 7.6003 -2.6008 2.6260 12 6 8.4048 -1.5778 2.0892 13 1 9.3779 -1.9880 1.8190 14 6 8.5874 -0.4464 3.1207 15 7 8.7432 0.7949 2.3512 16 6 9.2636 1.9662 2.8331 17 1 9.3378 2.8298 2.1887 18 6 9.6959 2.0437 4.1500 19 7 9.6060 0.9912 4.9352 20 14 10.4053 3.6418 4.8076 21 1 10.3962 4.6667 3.7331 22 1 9.5828 4.1154 5.9497 23 1 11.8003 3.4137 5.2631 24 6 8.2526 0.5822 0.9841 25 6 7.7872 -0.8810 0.8791 26 1 8.1969 -1.3282 -0.0267 27 6 3.4717 -1.2042 -0.0017 28 7 2.1559 -1.1487 -0.0011 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6443 2.1381 -0.0004 33 1 4.1274 2.1265 -0.0001 34 1 4.6053 -1.3363 1.9088 35 1 5.2692 -2.7170 1.0148 36 1 5.7515 -3.2261 3.2450 37 1 6.1666 -1.5458 3.6375 38 1 9.4784 -0.6282 3.7216 39 1 7.7099 -0.3801 3.7638 40 1 9.9084 1.0452 5.8552 41 1 9.0553 0.7671 0.2703 42 1 7.4161 1.2515 0.7831 43 1 3.9670 -2.1640 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083002447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:28 Heat of formation + Delta-G solvation = -8.401028 kcal Electronic energy + Delta-G solvation = -27556.828913 eV Core-core repulsion = 23796.004553 eV Total energy + Delta-G solvation = -3760.824359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.53231 -41.11639 -39.65569 -37.73474 -36.36956 -34.65768 -33.82372 -33.40180 -31.76840 -29.81590 -29.60360 -28.38881 -26.61072 -25.21491 -24.46209 -23.98181 -22.63485 -21.58415 -20.22198 -19.27542 -18.74480 -18.37854 -17.64310 -17.21670 -17.02963 -16.92965 -16.42421 -16.20189 -15.78354 -15.56058 -15.41046 -15.08253 -14.90639 -14.54377 -14.26047 -14.07541 -14.01352 -13.61285 -13.33166 -13.14671 -13.10448 -12.99066 -12.89667 -12.80495 -12.35244 -12.20675 -12.09651 -11.89539 -11.79857 -11.20996 -10.98485 -10.80897 -10.68846 -10.46926 -9.96187 -9.70129 -8.96106 -7.87069 -5.29737 -0.35111 0.13709 1.40207 1.43100 1.43700 1.54705 1.73037 2.43262 2.62972 2.71714 3.06572 3.25639 3.30452 3.48845 3.63374 3.69401 3.71733 3.74279 3.85370 3.95977 4.01957 4.12637 4.28243 4.32157 4.34136 4.43646 4.58930 4.65255 4.70155 4.78727 4.82719 4.90618 4.94310 5.00327 5.06985 5.16634 5.34393 5.44761 5.47014 5.57915 5.64673 6.04927 6.16919 6.35396 6.79126 6.90477 7.04056 7.68469 8.29724 9.17403 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.004083 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.024942 B = 6856.856683 C = 7609.802382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.140 3.860 3 C -0.169 4.169 4 C -0.035 4.035 5 C -0.203 4.203 6 C 0.555 3.445 7 O -0.558 6.558 8 N -0.584 5.584 9 C 0.071 3.929 10 C 0.051 3.949 11 O -0.369 6.369 12 C 0.086 3.914 13 H 0.128 0.872 14 C 0.150 3.850 15 N -0.621 5.621 16 C -0.246 4.246 17 H 0.075 0.925 18 C -0.059 4.059 19 N -0.946 5.946 20 Si 0.982 3.018 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.132 3.868 25 C 0.122 3.878 26 H 0.093 0.907 27 C 0.138 3.862 28 N -0.498 5.498 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.030 0.970 38 H 0.065 0.935 39 H -0.006 1.006 40 H 0.249 0.751 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.320 -7.091 -8.471 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.003 3.997 3 C -0.189 4.189 4 C -0.062 4.062 5 C -0.208 4.208 6 C 0.344 3.656 7 O -0.438 6.438 8 N -0.317 5.317 9 C -0.051 4.051 10 C -0.026 4.026 11 O -0.285 6.285 12 C 0.027 3.973 13 H 0.146 0.854 14 C 0.024 3.976 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.093 0.907 18 C -0.252 4.252 19 N -0.594 5.594 20 Si 0.809 3.191 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.006 3.994 25 C 0.017 3.983 26 H 0.111 0.889 27 C -0.020 4.020 28 N -0.208 5.208 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.190 0.810 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.168 0.832 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.012 0.988 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.290 -7.636 -8.618 21.613 hybrid contribution 1.298 2.198 0.578 2.617 sum -16.993 -5.438 -8.039 19.569 Atomic orbital electron populations 1.20891 0.85768 1.04942 1.04503 1.22165 0.99058 0.87892 0.90596 1.22243 0.93216 1.01106 1.02316 1.21793 0.95546 0.97048 0.91781 1.20798 0.92817 0.97171 1.10058 1.18656 0.87900 0.79173 0.79881 1.90763 1.68265 1.43280 1.41442 1.46750 1.05764 1.37564 1.41584 1.22200 0.94337 0.94237 0.94341 1.22541 0.81571 1.03425 0.95014 1.86870 1.21120 1.37643 1.82910 1.22770 0.94322 0.88902 0.91324 0.85416 1.21811 0.99560 0.84017 0.92202 1.44519 1.72834 1.09674 1.07820 1.19414 1.33435 0.89323 0.95291 0.90675 1.25628 1.02015 1.01199 0.96362 1.70106 1.53427 1.29406 1.06509 0.84972 0.77499 0.78719 0.77877 1.19469 1.21648 1.21245 1.21661 0.96612 0.94491 0.86639 1.21362 0.80315 0.96415 1.00163 0.88920 1.23401 0.89320 0.97691 0.91543 1.67689 1.09049 1.29860 1.14196 0.88763 0.88228 0.90037 0.81022 0.84836 0.88865 0.87439 0.83153 0.95135 0.91645 0.98834 0.94100 0.95214 0.95033 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.16 71.24 0.72 -0.30 16 2 C 0.14 2.47 6.78 42.57 0.29 2.76 16 3 C -0.17 -3.05 9.72 22.33 0.22 -2.84 16 4 C -0.04 -0.88 9.85 22.73 0.22 -0.66 16 5 C -0.20 -5.50 4.91 -20.00 -0.10 -5.60 16 6 C 0.56 18.91 6.48 86.78 0.56 19.47 16 7 O -0.56 -23.06 14.47 -3.90 -0.06 -23.12 16 8 N -0.58 -18.99 3.09 -810.79 -2.51 -21.50 16 9 C 0.07 1.71 4.90 86.27 0.42 2.14 16 10 C 0.05 1.38 6.73 71.58 0.48 1.86 16 11 O -0.37 -12.39 10.25 -145.84 -1.50 -13.88 16 12 C 0.09 3.34 3.91 30.89 0.12 3.46 16 13 H 0.13 4.59 8.14 -2.38 -0.02 4.57 16 14 C 0.15 7.55 5.26 86.71 0.46 8.01 16 15 N -0.62 -33.68 3.39 -696.22 -2.36 -36.03 16 16 C -0.25 -14.43 10.25 84.03 0.86 -13.56 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.06 -3.41 5.48 84.86 0.47 -2.94 16 19 N -0.95 -56.86 10.18 21.65 0.22 -56.63 16 20 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 C 0.13 6.15 6.06 86.63 0.53 6.68 16 25 C 0.12 4.59 3.27 45.56 0.15 4.74 16 26 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 27 C 0.14 3.03 8.77 85.02 0.75 3.78 16 28 N -0.50 -10.50 10.25 -182.82 -1.87 -12.38 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.56 8.07 -2.39 -0.02 0.54 16 31 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.09 2.11 5.82 -2.39 -0.01 2.10 16 35 H 0.11 1.83 6.63 -2.39 -0.02 1.82 16 36 H 0.15 2.71 8.14 -2.39 -0.02 2.70 16 37 H 0.03 1.01 6.73 -2.39 -0.02 0.99 16 38 H 0.07 3.74 6.25 -2.39 -0.01 3.73 16 39 H -0.01 -0.34 6.48 -2.39 -0.02 -0.36 16 40 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.03 1.60 5.47 -2.39 -0.01 1.59 16 43 H 0.18 3.13 5.69 -2.91 -0.02 3.12 16 Total: -1.00 -75.99 337.31 1.14 -74.84 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.04 Total: 13.15 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 6.15 Total: 26.98 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -6.52 Total: -126.55 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.55 Total: -37.00 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.99 1.14 -74.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083002447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.443 kcal (2) G-P(sol) polarization free energy of solvation -75.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds